Family IRES_KSHV

Download the aligments for this family. (.stk)

RNA Shape

Level1

(((((())))))()((((((()))))()))

Level2

()()(()())

Consensus Secondary Structure representation

>predicted reference IRES_KSHV 
UUGCUAUGCCGCGGCAGACUCCUCUUCCCGCCAAGAACUUAUAGACCAGGAGAAAGAACUCCUUGAGAAGUUGGCGUGGCGAACAGAGGCAGUCUUAGCGACGGACGUAACUUCCUUCUUGUUACUUAAAUUGCUGGGGGGCUCCCAACACCUGGACUUUUGGCACCACGAGGUCAACACCCCGAUUACAAAAGCCUUAGUUGACCCAAAGACUGGCUCAUUGCCCGCCCCCAUUAUCAGCGCUGCAG
.........(((...((((((((((...(((((..(((((.......(((((......)))))....)))))....)))))...))))).)))))..)))..(((.......))).................((((((((((...((((....((.((((((......((.(((....))).))....))))))))...))))...........(((.....))).)))))).....)))).......