Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of RNAshapes
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & RNAshapes [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
RNAshapes |
|---|
| MCC |
0.747 |
>
|
0.590 |
| Average MCC ± 95% Confidence Intervals |
0.683
±
0.357
|
>
|
0.576
±
0.365
|
| Sensitivity |
0.707 |
>
|
0.595 |
| Positive Predictive Value |
0.796 |
>
|
0.595 |
| Total TP |
82 |
>
|
69 |
| Total TN |
9581 |
>
|
9568 |
| Total FP |
34 |
<
|
68 |
| Total FP CONTRA |
2 |
<
|
15 |
| Total FP INCONS |
19 |
<
|
32 |
| Total FP COMP |
13 |
<
|
21 |
| Total FN |
34 |
<
|
47 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and RNAshapes. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and RNAshapes).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and RNAshapes. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and RNAshapes).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
82 |
| Total TN |
9581 |
| Total FP |
34 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
19 |
| Total FP COMP |
13 |
| Total FN |
34 |
| Total Scores |
|---|
| MCC |
0.747 |
| Average MCC ± 95% Confidence Intervals |
0.683
±
0.357
|
| Sensitivity |
0.707 |
| Positive Predictive Value |
0.796 |
| Nr of predictions |
5 |
Performance of RNAshapes
- scored lower in this pairwise comparison
1. Total counts & total scores for RNAshapes
| Total Base Pair Counts |
|---|
| Total TP |
69 |
| Total TN |
9568 |
| Total FP |
68 |
| Total FP CONTRA |
15 |
| Total FP INCONS |
32 |
| Total FP COMP |
21 |
| Total FN |
47 |
| Total Scores |
|---|
| MCC |
0.590 |
| Average MCC ± 95% Confidence Intervals |
0.576
±
0.365
|
| Sensitivity |
0.595 |
| Positive Predictive Value |
0.595 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
