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Table of contents:
- Overview
- Performance Plots
- Performance of MXScarna(20) - scored higher in this pairwise comparison
- Performance of RNAalifold(seed) - scored lower in this pairwise comparison
- Compile and download dataset for MXScarna(20) & RNAalifold(seed) [.zip] - may take several seconds...
Overview
| Metric | MXScarna(20) | RNAalifold(seed) | |
|---|---|---|---|
| MCC | 0.603 | > | 0.572 |
| Average MCC ± 95% Confidence Intervals | 0.608 ± 0.100 | > | 0.573 ± 0.049 |
| Sensitivity | 0.488 | > | 0.356 |
| Positive Predictive Value | 0.749 | < | 0.923 |
| Total TP | 344 | > | 251 |
| Total TN | 160156 | < | 160343 |
| Total FP | 171 | > | 31 |
| Total FP CONTRA | 17 | > | 7 |
| Total FP INCONS | 98 | > | 14 |
| Total FP COMP | 56 | > | 10 |
| Total FN | 361 | < | 454 |
| P-value | 3.16042554876e-08 | ||
Performance plots
Performance of MXScarna(20) - scored higher in this pairwise comparison
1. Total counts & total scores for MXScarna(20)
| Total Base Pair Counts | |
|---|---|
| Total TP | 344 |
| Total TN | 160156 |
| Total FP | 171 |
| Total FP CONTRA | 17 |
| Total FP INCONS | 98 |
| Total FP COMP | 56 |
| Total FN | 361 |
| Total Scores | |
|---|---|
| MCC | 0.603 |
| Average MCC ± 95% Confidence Intervals | 0.608 ± 0.100 |
| Sensitivity | 0.488 |
| Positive Predictive Value | 0.749 |
| Nr of predictions | 18 |
2. Individual counts for MXScarna(20) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.73 | 0.70 | 0.78 | 14 | 972 | 4 | 0 | 4 | 0 | 6 | |
| 2XKV_B | 0.45 | 0.20 | 1.00 | 4 | 4556 | 3 | 0 | 0 | 3 | 16 | |
| 2XXA_G | 0.80 | 0.71 | 0.91 | 30 | 5118 | 4 | 0 | 3 | 1 | 12 | |
| 3GX2_A | 0.70 | 0.58 | 0.85 | 23 | 4344 | 5 | 0 | 4 | 1 | 17 | |
| 3IVN_B | 0.74 | 0.58 | 0.95 | 18 | 2327 | 1 | 1 | 0 | 0 | 13 | |
| 3IZ4_A | 0.51 | 0.41 | 0.64 | 54 | 70791 | 32 | 7 | 24 | 1 | 78 | |
| 3JYX_4 | 0.33 | 0.30 | 0.37 | 10 | 12219 | 32 | 2 | 15 | 15 | 23 | |
| 3LA5_A | 0.78 | 0.62 | 1.00 | 21 | 2464 | 0 | 0 | 0 | 0 | 13 | |
| 3NPB_A | 0.69 | 0.59 | 0.82 | 27 | 6988 | 9 | 1 | 5 | 3 | 19 | |
| 3O58_3 | 0.52 | 0.40 | 0.67 | 14 | 12382 | 17 | 2 | 5 | 10 | 21 | |
| 3PDR_A | 0.71 | 0.57 | 0.89 | 41 | 12834 | 9 | 0 | 5 | 4 | 31 | |
| 3RKF_A | 0.72 | 0.53 | 1.00 | 18 | 2193 | 0 | 0 | 0 | 0 | 16 | |
| 3SD1_A | 0.63 | 0.55 | 0.74 | 23 | 3885 | 8 | 2 | 6 | 0 | 19 | |
| 4A1C_2 | 0.18 | 0.15 | 0.21 | 5 | 11757 | 36 | 2 | 17 | 17 | 28 | |
| 4AOB_A | 0.62 | 0.55 | 0.72 | 23 | 4339 | 10 | 0 | 9 | 1 | 19 | |
| 4ENB_A | 0.26 | 0.11 | 0.67 | 2 | 1272 | 1 | 0 | 1 | 0 | 17 | |
| 4ENC_A | 0.60 | 0.37 | 1.00 | 7 | 1319 | 0 | 0 | 0 | 0 | 12 |
Performance of RNAalifold(seed) - scored lower in this pairwise comparison
1. Total counts & total scores for RNAalifold(seed)
| Total Base Pair Counts | |
|---|---|
| Total TP | 251 |
| Total TN | 160343 |
| Total FP | 31 |
| Total FP CONTRA | 7 |
| Total FP INCONS | 14 |
| Total FP COMP | 10 |
| Total FN | 454 |
| Total Scores | |
|---|---|
| MCC | 0.572 |
| Average MCC ± 95% Confidence Intervals | 0.573 ± 0.049 |
| Sensitivity | 0.356 |
| Positive Predictive Value | 0.923 |
| Nr of predictions | 18 |
2. Individual counts for RNAalifold(seed) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.52 | 0.27 | 1.00 | 3 | 403 | 0 | 0 | 0 | 0 | 8 | |
| 2L94_A | 0.59 | 0.40 | 0.89 | 8 | 981 | 1 | 0 | 1 | 0 | 12 | |
| 2XKV_B | 0.59 | 0.35 | 1.00 | 7 | 4553 | 2 | 0 | 0 | 2 | 13 | |
| 2XXA_G | 0.46 | 0.21 | 1.00 | 9 | 5142 | 0 | 0 | 0 | 0 | 33 | |
| 3GX2_A | 0.74 | 0.55 | 1.00 | 22 | 4349 | 1 | 0 | 0 | 1 | 18 | |
| 3IVN_B | 0.61 | 0.48 | 0.79 | 15 | 2327 | 4 | 2 | 2 | 0 | 16 | |
| 3IZ4_A | 0.42 | 0.21 | 0.85 | 28 | 70843 | 5 | 1 | 4 | 0 | 104 | |
| 3JYX_4 | 0.46 | 0.21 | 1.00 | 7 | 12239 | 2 | 0 | 0 | 2 | 26 | |
| 3LA5_A | 0.63 | 0.47 | 0.84 | 16 | 2466 | 3 | 1 | 2 | 0 | 18 | |
| 3NPB_A | 0.66 | 0.48 | 0.92 | 22 | 6997 | 3 | 1 | 1 | 1 | 24 | |
| 3O58_3 | 0.51 | 0.26 | 1.00 | 9 | 12394 | 0 | 0 | 0 | 0 | 26 | |
| 3PDR_A | 0.68 | 0.46 | 1.00 | 33 | 12847 | 1 | 0 | 0 | 1 | 39 | |
| 3RKF_A | 0.63 | 0.47 | 0.84 | 16 | 2192 | 3 | 1 | 2 | 0 | 18 | |
| 3SD1_A | 0.58 | 0.40 | 0.85 | 17 | 3896 | 3 | 1 | 2 | 0 | 25 | |
| 4A1C_2 | 0.39 | 0.15 | 1.00 | 5 | 11776 | 2 | 0 | 0 | 2 | 28 | |
| 4AOB_A | 0.72 | 0.52 | 1.00 | 22 | 4349 | 1 | 0 | 0 | 1 | 20 | |
| 4ENB_A | 0.56 | 0.32 | 1.00 | 6 | 1269 | 0 | 0 | 0 | 0 | 13 | |
| 4ENC_A | 0.56 | 0.32 | 1.00 | 6 | 1320 | 0 | 0 | 0 | 0 | 13 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.