CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MXScarna(20)		UNAFold
MCC	0.608	>	0.459
Average MCC ± 95% Confidence Intervals	0.623 ± 0.015	>	0.503 ± 0.019
Sensitivity	0.550	>	0.454
Positive Predictive Value	0.674	>	0.465
Total TP	32159	>	26557
Total TN	116771486	>	116762035
Total FP	20474	<	33958
Total FP CONTRA	2710	<	4801
Total FP INCONS	12850	<	25812
Total FP COMP	4914	>	3345
Total FN	26353	<	31955
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MXScarna(20) and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(20) and UNAFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MXScarna(20) and UNAFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(20) and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(20) and UNAFold).

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Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

Total Base Pair Counts
Total TP	32159
Total TN	116771486
Total FP	20474
Total FP CONTRA	2710
Total FP INCONS	12850
Total FP COMP	4914
Total FN	26353

Total Scores
MCC	0.608
Average MCC ± 95% Confidence Intervals	0.623 ± 0.015
Sensitivity	0.550
Positive Predictive Value	0.674
Nr of predictions	286

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2. Individual counts for MXScarna(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	59	47821	19	2	13	4	38
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	75	57889	11	1	5	5	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	44	47510	34	6	26	2	49
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	73	59590	26	2	20	4	37
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.84	81	73824	18	2	13	3	42
ASE_00018	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	86	80491	29	1	23	5	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	58	73842	24	3	17	4	68
ASE_00021	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	101	104081	17	2	12	3	59
ASE_00022	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	82	82925	28	5	16	7	42
ASE_00028	RNaseP_bact_b links to Rfam database...	0.78	0.70	0.87	88	84565	21	4	9	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	67	70403	38	1	29	8	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	77	59250	18	0	13	5	33
ASE_00038	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.62	45	53555	32	3	25	4	56
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	73	78899	38	3	28	7	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	68	57551	17	1	10	6	40
ASE_00042	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.86	102	89982	21	3	13	5	43
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	79	54527	13	4	5	4	26
ASE_00064	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	53	45387	22	1	10	11	36
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	37611	11	2	4	5	27
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	75	67805	21	1	15	5	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	76	108712	26	4	19	3	86
ASE_00077	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	60	45073	22	3	14	5	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	57	43005	17	2	7	8	26
ASE_00080	RNaseP_bact_a links to Rfam database...	0.40	0.33	0.48	40	71548	48	5	38	5	83
ASE_00081	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	65	49691	24	1	13	10	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.41	0.34	0.51	39	70424	44	4	33	7	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	74	62390	24	2	15	7	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	53560	28	2	17	9	50
ASE_00087	RNaseP_bact_a links to Rfam database...	0.42	0.31	0.59	44	88335	37	2	29	6	100
ASE_00090	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	50	55538	27	1	22	4	51
ASE_00092	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.74	59	63466	28	6	15	7	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	82	64517	24	2	19	3	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	79	64164	25	1	17	7	40
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	53	64178	35	0	30	5	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.72	76	73047	36	1	29	6	51
ASE_00115	RNaseP_bact_a links to Rfam database...	0.36	0.28	0.46	28	54554	38	2	31	5	73
ASE_00118	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	41	60662	33	1	22	10	61
ASE_00119	RNaseP_bact_a links to Rfam database...	0.32	0.23	0.44	25	62778	34	0	32	2	83
ASE_00123	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.68	30	38459	16	3	11	2	55
ASE_00125	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.86	38	39296	11	0	6	5	50
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	67	40395	15	2	6	7	15
ASE_00128	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	56	53236	14	2	7	5	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	70	62740	28	3	22	3	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.78	39	39290	20	1	10	9	46
ASE_00134	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	49	50333	29	1	20	8	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.56	38	63122	41	1	29	11	71
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	57	48132	24	1	15	8	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	48441	23	3	16	4	42
ASE_00138	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.74	49	40404	27	1	16	10	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.41	0.68	51	70801	28	4	20	4	74
ASE_00142	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	90	67059	16	3	9	4	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.74	63	70791	29	1	21	7	61
ASE_00153	RNaseP_nuc links to Rfam database...	0.52	0.45	0.60	33	57575	51	2	20	29	40
ASE_00163	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	57	53232	17	3	9	5	36
ASE_00165	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.64	45	52905	29	3	22	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	47	48749	35	5	27	3	46
ASE_00171	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.51	39	48439	42	1	37	4	55
ASE_00172	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.87	61	58926	15	2	7	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.42	0.34	0.53	37	61005	39	3	30	6	72
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	64	59949	26	3	15	8	43
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	58	44183	18	4	8	6	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	64	51282	20	3	11	6	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	61	57553	24	6	10	8	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.57	43	84179	38	2	31	5	93
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	65	61343	24	0	17	7	48
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	57	54543	17	4	11	2	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	47	73468	24	3	18	3	81
ASE_00186	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	90	78896	20	1	16	3	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.42	0.64	38	45392	24	5	16	3	52
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	84	89146	27	2	21	4	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	70	52564	20	4	12	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	58	46594	17	3	10	4	38
ASE_00212	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	100	93844	23	3	14	6	48
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	73	56195	16	4	8	4	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.24	0.19	0.30	19	48453	48	6	38	4	80
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	62	39272	13	1	5	7	20
ASE_00217	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	53	40393	31	1	23	7	37
ASE_00221	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	69	64520	34	1	30	3	48
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	55	46898	26	4	14	8	31
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	61	42417	14	3	5	6	26
ASE_00231	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	44	47832	24	1	18	5	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	61	38437	10	3	2	5	23
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.47	0.73	61	75383	27	3	19	5	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.77	56	64188	22	4	13	5	58
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	60	43890	12	1	5	6	27
ASE_00242	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	75	60976	31	1	23	7	37
ASE_00248	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	78	62383	26	1	19	6	36
ASE_00254	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.87	53	36795	12	4	4	4	29
ASE_00255	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	77	74583	34	3	28	3	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	50	50969	30	3	18	9	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	52	70424	27	4	20	3	68
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	59	45080	20	1	10	9	29
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.30	0.61	38	72328	27	1	23	3	90
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.85	52	55550	14	2	7	5	51
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.96	51	48152	6	0	2	4	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	72	53217	19	3	9	7	29
ASE_00280	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	56	51925	32	1	21	10	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	65	44478	16	3	5	8	23
ASE_00282	RNaseP_bact_a links to Rfam database...	0.51	0.44	0.59	56	77720	43	3	36	4	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.73	55	61701	25	3	17	5	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	58241	15	2	11	2	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	58	68923	28	4	21	3	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	52	46591	31	1	21	9	40
ASE_00287	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	66	54862	25	3	15	7	37
ASE_00292	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	82	81697	39	2	29	8	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	101	114353	34	1	26	7	70
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	79	91700	32	5	22	5	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	48	52902	30	3	22	5	50
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.54	45	67445	43	7	31	5	68
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	31	6	10	15	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.66	0.77	74	72675	33	5	17	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	102	81695	17	4	9	4	36
ASE_00335	RNaseP_bact_b links to Rfam database...	0.69	0.63	0.76	73	75370	33	5	18	10	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.54	0.47	0.62	40	45991	32	4	21	7	45
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.88	86	62383	19	1	11	7	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	58	57893	25	2	17	6	49
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	52	75399	19	1	14	4	75
ASE_00362	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	56	48137	18	3	9	6	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.82	54	51294	22	2	10	10	40
ASE_00364	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.76	61	54205	25	3	16	6	44
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.65	48	58579	29	4	22	3	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	60	42997	20	3	11	6	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.66	54	55863	33	1	27	5	53
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	69	41830	14	0	6	8	15
ASE_00372	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.55	41	51929	36	4	29	3	59
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44783	15	2	10	3	33
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	38	3	33	2	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	57546	13	4	6	3	33
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	22	3	16	3	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	52	41834	29	1	18	10	32
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	75	54530	17	2	8	7	30
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.71	49	48447	24	2	18	4	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	60	50328	22	1	14	7	36
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	57	55865	27	6	17	4	47
ASE_00388	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	50	45689	20	1	13	6	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	58	42128	15	2	7	6	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.77	55	47824	21	1	15	5	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	19	4	8	7	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	54	41553	20	1	8	11	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	52	41551	19	4	9	6	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	74	54534	12	0	7	5	31
ASE_00398	RNaseP_bact_a links to Rfam database...	0.51	0.43	0.61	45	55871	38	1	28	9	59
ASE_00400	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.61	45	57896	33	3	26	4	61
ASE_00401	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.62	51	76946	36	4	27	5	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	50	42418	21	1	17	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	65	55867	19	3	10	6	42
ASE_00404	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	43004	10	0	7	3	25
ASE_00406	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.76	53	48758	26	1	16	9	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.54	0.46	0.63	41	49390	27	2	22	3	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	52	58237	28	2	20	6	53
ASE_00413	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.69	49	44480	29	5	17	7	32
ASE_00415	RNaseP_bact_a links to Rfam database...	0.42	0.35	0.51	36	54876	37	1	33	3	67
ASE_00416	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.68	65	77325	36	6	25	5	62
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	50	54876	23	1	19	3	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	59	46903	14	2	7	5	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	84	56859	16	3	7	6	25
ASE_00428	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.70	73	76532	38	6	25	7	52
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	57	46901	18	2	11	5	40
ASE_00437	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.69	68	79302	35	0	31	4	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	38	64196	33	1	26	6	74
ASE_00448	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	65	64169	33	1	26	6	47
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	87	70778	16	3	8	5	38
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.84	0.81	0.87	369	1085176	107	10	46	51	89
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	283	1141947	122	12	74	36	191
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.78	317	1170807	127	11	80	36	153
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.68	0.63	0.74	288	1107425	137	16	87	34	168
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.72	0.66	0.78	312	1172344	127	16	74	37	161
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.73	0.66	0.81	316	1181563	109	13	61	35	160
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.69	0.64	0.74	293	1108909	137	18	85	34	164
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.81	318	1178489	108	6	67	35	147
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.76	0.71	0.81	328	1135874	114	12	64	38	135
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.69	0.64	0.75	305	1201619	132	14	87	31	171
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.80	303	1152540	113	14	64	35	163
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.76	0.70	0.82	332	1180009	110	11	64	35	139
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.65	0.60	0.71	281	1190800	160	10	105	45	187
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.57	0.52	0.63	232	1082285	168	19	120	29	213
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.62	0.56	0.68	264	1178492	152	16	108	28	209
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.73	0.67	0.80	319	1207837	117	10	69	38	156
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.73	0.67	0.80	319	1198526	122	12	69	41	159
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.73	0.67	0.81	302	1105955	106	13	58	35	151
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.71	0.65	0.77	317	1218729	129	13	82	34	167
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.73	0.67	0.79	321	1198521	119	12	72	35	157
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.70	0.64	0.77	299	1192353	124	11	77	36	169
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.77	306	1111891	121	14	75	32	149
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.70	0.65	0.77	298	1122364	122	17	72	33	164
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.68	0.62	0.74	277	1085225	135	13	86	36	169
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.71	0.63	0.80	289	1114908	114	13	61	40	168
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.68	0.63	0.73	286	1110405	132	17	87	28	167
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.71	0.62	0.80	280	1129906	107	12	58	37	170
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.70	0.64	0.77	299	1180027	133	10	80	43	165
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.72	0.66	0.78	301	1117875	125	10	74	41	152
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.71	0.65	0.78	303	1144954	117	13	71	33	161
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.69	0.62	0.77	281	1131397	117	9	73	35	175
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.70	0.64	0.77	292	1117883	123	15	70	38	166
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.62	0.58	0.66	274	1189239	172	18	122	32	202
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.48	0.46	0.51	226	1620454	284	45	175	64	268
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.42	0.39	0.45	204	1762046	308	49	204	55	315
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.43	0.40	0.46	183	1445453	276	47	167	62	279
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.45	0.41	0.49	212	1805516	285	39	183	63	309
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.49	0.45	0.53	227	1627679	267	35	169	63	275
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	190	1988597	294	32	196	66	327
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.37	0.34	0.40	163	1769615	307	47	196	64	314
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.31	0.26	0.35	136	1892099	328	47	203	78	378
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.46	0.44	0.49	219	1586422	293	53	177	63	279
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.52	229	1584649	269	43	169	57	272
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.49	0.47	0.52	235	1615052	277	51	165	61	268
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.48	0.44	0.53	224	1674941	262	38	162	62	283
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.42	0.40	0.43	195	1579299	332	47	212	73	287
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.50	0.48	0.52	242	1640302	281	47	175	59	264
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	229	1611474	266	39	168	59	267
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.51	0.47	0.54	236	1625872	273	37	161	75	262
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.37	0.33	0.42	175	2126532	323	40	206	77	359
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.47	0.43	0.50	223	1750812	281	44	177	60	292
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.45	0.41	0.48	192	1606131	304	37	168	99	272
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.52	227	1615066	271	42	168	61	269
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.39	0.37	0.41	181	1665782	316	50	212	54	314
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.63	0.58	0.69	266	1116382	147	16	101	30	192
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.69	0.62	0.76	277	1094097	130	6	80	44	168
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.78	303	1119366	134	11	76	47	149
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.74	0.68	0.81	303	1098531	115	7	62	46	143
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.52	226	1665793	276	41	165	70	265
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.46	0.43	0.48	207	1640338	292	44	177	71	276
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.42	0.40	0.44	191	1636712	314	43	199	72	290
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.46	0.43	0.49	208	1638533	291	37	177	77	278
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.60	0.54	0.67	217	945677	148	10	96	42	187
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.75	268	1137427	134	8	83	43	179
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.63	0.57	0.71	224	1152605	176	10	82	84	170
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.61	0.55	0.68	260	1117878	154	17	105	32	210
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.74	0.69	0.79	322	1135872	121	12	72	37	142
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.44	0.42	0.46	211	1606072	295	46	199	50	292
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.48	0.45	0.51	229	1593556	274	47	173	54	277
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.47	0.45	0.50	230	1693258	286	45	187	54	285
PDB_00571	tRNA links to Rfam database...	0.76	0.68	0.85	17	3301	3	1	2	0	8
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.69	0.60	0.79	295	1073472	114	10	68	36	200
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.89	0.79	1.00	19	2259	0	0	0	0	5
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.62	0.51	0.75	274	1500415	142	2	87	53	261
PDB_01020	Purine links to Rfam database...	0.88	0.78	1.00	18	2260	0	0	0	0	5
PDB_01073	SAM links to Rfam database...	0.81	0.76	0.87	26	4341	6	1	3	2	8
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.66	0.56	0.78	308	1471077	135	7	78	50	239
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.61	0.52	0.71	293	1606118	156	16	101	39	269
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.64	0.54	0.75	291	1433583	134	3	94	37	249
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.66	0.57	0.76	302	1204732	134	11	83	40	225
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.69	0.60	0.79	294	1117886	120	10	70	40	197
RFA_00599	Telomerase-vert links to Rfam database...	0.55	0.52	0.58	58	101375	62	5	37	20	53
RFA_00601	Telomerase-vert links to Rfam database...	0.81	0.80	0.81	91	99123	42	5	16	21	23
RFA_00602	Telomerase-vert links to Rfam database...	0.72	0.72	0.73	83	101361	51	6	25	20	33
TMR_00017	tmRNA links to Rfam database...	0.55	0.52	0.59	53	67071	42	16	21	5	49
TMR_00018	tmRNA links to Rfam database...	0.48	0.48	0.49	44	64530	48	21	25	2	48
TMR_00038	tmRNA links to Rfam database...	0.70	0.62	0.80	68	71168	24	8	9	7	42
TMR_00042	tmRNA links to Rfam database...	0.56	0.55	0.56	54	62739	48	11	31	6	44
TMR_00046	tmRNA links to Rfam database...	0.56	0.55	0.57	53	62742	46	5	35	6	43
TMR_00048	tmRNA links to Rfam database...	0.53	0.52	0.55	49	64891	48	7	33	8	46
TMR_00080	tmRNA links to Rfam database...	0.49	0.50	0.48	48	70399	54	25	28	1	48
TMR_00082	tmRNA links to Rfam database...	0.44	0.44	0.45	42	67803	53	17	34	2	54
TMR_00123	tmRNA links to Rfam database...	0.66	0.53	0.81	54	66363	23	2	11	10	47
TMR_00137	tmRNA links to Rfam database...	0.37	0.36	0.39	32	60992	53	18	33	2	57
TMR_00142	tmRNA links to Rfam database...	0.51	0.50	0.52	51	70778	53	14	33	6	51
TMR_00207	tmRNA links to Rfam database...	0.49	0.49	0.49	50	72288	54	16	36	2	53
TMR_00257	tmRNA links to Rfam database...	0.54	0.49	0.59	48	67080	38	10	23	5	50
TMR_00271	tmRNA links to Rfam database...	0.43	0.37	0.49	34	64192	38	11	24	3	57
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	43	15	26	2	49
TMR_00366	tmRNA links to Rfam database...	0.60	0.56	0.65	56	67810	43	8	22	13	44
TMR_00378	tmRNA links to Rfam database...	0.65	0.60	0.70	58	67813	36	10	15	11	39
TMR_00399	tmRNA links to Rfam database...	0.38	0.35	0.40	33	64898	53	16	33	4	61
TMR_00404	tmRNA links to Rfam database...	0.48	0.47	0.49	43	67441	54	14	30	10	49
TMR_00427	tmRNA links to Rfam database...	0.56	0.52	0.60	50	67445	36	15	18	3	47
TMR_00443	tmRNA links to Rfam database...	0.59	0.55	0.63	57	67070	36	15	19	2	47
TMR_00451	tmRNA links to Rfam database...	0.34	0.34	0.34	30	63459	58	21	36	1	59
TMR_00458	tmRNA links to Rfam database...	0.39	0.38	0.41	35	63460	51	20	31	0	58
TMR_00469	tmRNA links to Rfam database...	0.62	0.60	0.65	60	64527	38	14	19	5	40
TMR_00472	tmRNA links to Rfam database...	0.56	0.47	0.67	46	64551	34	12	11	11	51
TMR_00519	tmRNA links to Rfam database...	0.38	0.40	0.37	38	63086	68	19	47	2	57
TMR_00520	tmRNA links to Rfam database...	0.43	0.41	0.46	41	63100	51	12	37	2	58
TMR_00522	tmRNA links to Rfam database...	0.46	0.44	0.49	43	63102	45	17	28	0	54
TMR_00528	tmRNA links to Rfam database...	0.39	0.40	0.38	39	63088	65	19	44	2	58
TMR_00540	tmRNA links to Rfam database...	0.48	0.48	0.48	50	73431	56	17	38	1	54
TMR_00568	tmRNA links to Rfam database...	0.57	0.53	0.61	52	60641	45	4	29	12	47
TMR_00571	tmRNA links to Rfam database...	0.60	0.56	0.65	55	60641	42	5	25	12	44
TMR_00580	tmRNA links to Rfam database...	0.60	0.52	0.69	52	60651	33	3	20	10	48
TMR_00584	tmRNA links to Rfam database...	0.61	0.57	0.66	55	60992	39	5	23	11	42
TMR_00586	tmRNA links to Rfam database...	0.58	0.55	0.62	53	60989	42	6	27	9	44
TMR_00616	tmRNA links to Rfam database...	0.58	0.47	0.71	47	67095	24	9	10	5	52
TMR_00699	tmRNA links to Rfam database...	0.55	0.50	0.60	51	67076	37	10	24	3	51
TMR_00702	tmRNA links to Rfam database...	0.52	0.50	0.55	50	67070	43	14	27	2	50
TMR_00703	tmRNA links to Rfam database...	0.54	0.49	0.58	49	67444	39	13	22	4	50

^top

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	26557
Total TN	116762035
Total FP	33958
Total FP CONTRA	4801
Total FP INCONS	25812
Total FP COMP	3345
Total FN	31955

Total Scores
MCC	0.459
Average MCC ± 95% Confidence Intervals	0.503 ± 0.019
Sensitivity	0.454
Positive Predictive Value	0.465
Nr of predictions	286

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	47800	29	9	18	2	29
ASE_00005	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	63	57876	35	1	30	4	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	61	47496	32	7	22	3	32
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	59587	43	1	38	4	51
ASE_00012	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	59	73814	52	4	43	5	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	98	80484	21	4	15	2	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73806	46	7	39	0	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	86	104057	60	7	46	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.48	56	82911	67	6	55	6	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.55	0.57	69	84545	60	8	44	8	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.66	65	59242	37	0	33	4	45
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	54	53528	47	4	42	1	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78882	66	5	55	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	44	57537	53	2	47	4	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	83	89971	49	2	44	3	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54514	34	3	27	4	34
ASE_00064	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.32	28	45363	69	4	56	9	61
ASE_00068	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	42	37598	35	4	31	0	43
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.60	68	67782	46	5	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.68	90	108678	47	3	40	4	72
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	38	7	31	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	52	42994	31	0	25	6	31
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	55	71519	60	5	52	3	68
ASE_00081	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	52	49680	39	2	36	1	45
ASE_00082	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	59	70400	55	1	40	14	57
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	24	2	15	7	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	68	53531	32	6	23	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.64	78	88288	49	5	39	5	66
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	74	63444	33	5	23	5	39
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	80	64151	31	5	25	1	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	38	64161	64	6	56	2	73
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	82	73031	40	5	35	0	45
ASE_00115	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	54521	53	1	45	7	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	57	60630	42	3	36	3	45
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00123	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	23	38425	59	3	52	4	62
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.77	0.74	63	40385	26	3	19	4	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	53211	36	3	25	8	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	47	39271	32	0	22	10	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	40	50302	64	10	51	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	59	8	48	3	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.60	48	48125	41	1	31	9	44
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	64	48422	32	4	26	2	34
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	84	70767	27	4	21	2	41
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.60	64	70769	49	2	41	6	60
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	68	2	24	42	23
ASE_00163	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	55	53212	45	2	32	11	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	53	52881	42	5	36	1	48
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	26	5	21	0	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	72	58893	36	6	25	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	60970	50	6	43	1	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	59932	31	2	22	7	32
ASE_00179	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	55	44167	31	6	25	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	51270	33	2	26	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	69	84130	59	6	50	3	67
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.66	67	54513	35	9	26	0	35
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	91	73418	33	5	22	6	37
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.60	49	45369	35	6	27	2	41
ASE_00197	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	73	89127	58	2	51	5	72
ASE_00198	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	54	52549	47	7	40	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	46572	34	6	28	0	37
ASE_00212	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	72	93827	66	5	57	4	76
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	79	56182	27	3	16	8	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	54	48429	35	7	26	2	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.67	54	39259	28	9	18	1	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.33	26	40390	58	6	48	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	61	64524	38	3	32	3	56
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.55	0.52	47	46880	44	14	30	0	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	30	47798	67	8	59	0	66
ASE_00232	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	49	38422	34	3	29	2	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.54	61	75354	55	4	47	4	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	57	64154	55	1	49	5	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	46	43876	41	5	29	7	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00248	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	43	62383	55	3	52	0	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	59	36778	24	6	13	5	23
ASE_00255	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	59	74573	59	7	52	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50946	40	9	31	0	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.53	40	45074	45	4	32	9	48
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	7	31	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	50	55513	48	9	39	0	53
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.39	35	48115	57	9	46	2	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	59	51911	38	4	29	5	39
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	69	77692	54	6	48	0	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.86	84	61678	22	2	12	8	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	66	58209	41	5	31	5	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	79	68898	36	2	27	7	43
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.75	68	54855	30	2	21	7	35
ASE_00292	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	82	81693	38	3	32	3	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	40	91676	90	9	81	0	105
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	66	52879	30	4	26	0	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	50	67423	59	6	49	4	63
ASE_00318	RNaseP_bact_b links to Rfam database...	0.65	0.64	0.67	75	80088	41	13	24	4	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	45	72660	73	3	63	7	67
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	71	81683	57	2	54	1	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75358	61	5	49	7	62
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.60	59	62383	39	2	37	0	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	53	57859	58	11	47	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.54	52	51264	47	4	40	3	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	32	54184	72	7	62	3	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.54	57	58547	50	10	39	1	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.55	48	42983	43	6	34	3	38
ASE_00369	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	67	55845	37	3	30	4	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	55	41825	25	7	18	0	29
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	69	51906	31	5	23	3	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	53	56856	47	4	40	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	36	4	26	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	61	45970	34	3	22	9	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	41824	40	6	31	3	40
ASE_00383	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.55	53	54519	47	4	39	4	52
ASE_00384	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	54	48428	39	2	32	5	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	50309	42	2	33	7	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	46	55841	58	6	52	0	58
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	65	45665	28	3	20	5	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42117	45	6	32	7	45
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.75	0.75	0.75	70	46878	26	5	18	3	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	49	41521	46	8	38	0	35
ASE_00396	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	48	41530	43	8	30	5	35
ASE_00397	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	60	54511	46	3	41	2	45
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	67	55846	35	3	29	3	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	58	57869	44	4	39	1	48
ASE_00401	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	70	76904	54	11	43	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	52	42403	34	6	25	3	33
ASE_00403	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	47	55846	53	3	49	1	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	63	48742	27	8	15	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49362	61	11	50	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	46	58213	54	8	44	2	59
ASE_00413	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	45	44462	44	14	30	0	36
ASE_00415	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	45	54840	63	9	52	2	58
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	38	2	29	7	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	76	54852	22	4	14	4	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	64	46883	31	5	19	7	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	53	56852	51	7	41	3	56
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	64	76521	55	5	46	4	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	60	46880	38	5	26	7	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79278	69	5	64	0	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	81	64162	30	2	16	12	31
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	74	70767	38	2	33	3	51
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.78	347	1085158	132	19	77	36	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.64	303	1141840	196	31	142	23	171
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	241	1170762	229	24	188	17	229
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	195	1107376	258	28	217	13	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	227	1172295	238	32	192	14	246
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	241	1181493	233	41	178	14	235
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	209	1108862	250	23	211	16	248
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	250	1178428	227	29	173	25	215
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.67	303	1135826	172	19	130	23	160
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	275	1201557	219	25	168	26	201
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152471	280	32	228	20	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.66	299	1179965	174	29	123	22	172
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	207	1190736	269	34	219	16	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	126	1082215	327	39	276	12	319
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	234	1178440	221	29	177	15	239
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	211	1207765	281	32	227	22	264
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	256	1198474	218	27	169	22	222
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1105885	293	45	235	13	290
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.58	276	1218667	230	24	174	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	186	1198451	301	43	246	12	292
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	228	1192304	228	35	173	20	240
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.47	0.45	0.48	207	1111853	250	29	197	24	248
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	217	1122314	236	33	187	16	245
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	222	1085175	222	28	176	18	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.69	310	1114822	160	19	120	21	147
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	154	1110361	293	42	238	13	299
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.44	186	1129832	259	29	209	21	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1179977	258	31	211	16	267
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.68	302	1117819	159	19	120	20	151
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.67	291	1144909	165	18	123	24	173
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.28	0.29	129	1131319	325	39	273	13	327
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.75	0.74	0.76	338	1117818	130	22	82	26	120
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1189200	274	30	220	24	273
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.23	0.22	114	1620379	443	82	325	36	380
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	163	1761959	431	87	294	50	356
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.16	0.16	0.16	76	1445368	444	67	339	38	386
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.26	141	1805406	466	81	322	63	380
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	176	1627600	377	65	269	43	326
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	158	1988457	459	73	327	59	359
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	104	1769488	470	103	326	41	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	169	1891961	426	77	278	71	345
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1586355	422	75	303	44	360
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	155	1584555	401	76	304	21	346
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	131	1615002	412	57	313	42	372
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.39	200	1674848	370	67	250	53	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	167	1579237	391	83	266	42	315
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.25	130	1640246	437	74	316	47	376
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	159	1611384	399	75	292	32	337
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.36	180	1625800	366	59	267	40	318
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	215	2126404	429	56	278	95	319
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750675	476	78	366	32	378
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606048	418	64	270	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1614990	413	60	315	38	358
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	154	1665688	426	77	306	43	341
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	265	1116332	195	23	145	27	193
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	121	1094037	315	38	264	13	324
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.37	153	1119337	287	30	236	21	299
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	243	1098483	208	22	155	31	203
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	183	1665703	391	62	277	52	308
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	138	1640264	418	60	304	54	345
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	117	1636617	466	66	345	55	364
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.32	151	1638482	393	57	265	71	335
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.26	101	945612	317	39	248	30	303
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	147	1137356	300	35	248	17	300
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.20	0.19	78	1152508	377	53	282	42	316
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117800	258	25	210	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	268	1135838	197	24	148	25	196
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	128	1606016	421	65	319	37	375
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1593484	433	84	314	35	383
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.36	193	1693178	383	91	258	34	322
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	258	1073389	221	20	178	23	237
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.54	285	1500255	284	22	216	46	250
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.39	0.37	0.41	202	1470973	322	44	251	27	345
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	324	1605991	243	32	181	30	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	315	1433457	227	14	185	28	225
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	232	1204667	242	27	202	13	295
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	235	1117815	238	14	196	28	256
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.63	78	101352	64	17	28	19	33
RFA_00601	Telomerase-vert links to Rfam database...	0.47	0.49	0.44	56	99109	89	21	49	19	58
RFA_00602	Telomerase-vert links to Rfam database...	0.51	0.53	0.48	62	101347	86	18	48	20	54
TMR_00017	tmRNA links to Rfam database...	0.38	0.38	0.39	39	67060	68	15	47	6	63
TMR_00018	tmRNA links to Rfam database...	0.25	0.26	0.24	24	64521	81	11	64	6	68
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71142	87	12	71	4	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	73	8	62	3	69
TMR_00046	tmRNA links to Rfam database...	0.56	0.56	0.57	54	62740	47	7	34	6	42
TMR_00048	tmRNA links to Rfam database...	0.33	0.35	0.31	33	64874	78	9	64	5	62
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.60	56	67802	43	12	26	5	40
TMR_00123	tmRNA links to Rfam database...	0.17	0.17	0.17	17	66327	92	11	75	6	84
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.16	15	60979	89	14	67	8	74
TMR_00142	tmRNA links to Rfam database...	0.57	0.61	0.54	62	70761	53	21	32	0	40
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.26	25	72292	80	6	67	7	78
TMR_00257	tmRNA links to Rfam database...	0.20	0.19	0.20	19	67068	78	8	66	4	79
TMR_00271	tmRNA links to Rfam database...	0.47	0.46	0.48	42	64173	54	7	39	8	49
TMR_00332	tmRNA links to Rfam database...	0.28	0.27	0.29	27	67067	71	14	53	4	72
TMR_00366	tmRNA links to Rfam database...	0.31	0.30	0.31	30	67800	79	10	56	13	70
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	7	68	11	68
TMR_00399	tmRNA links to Rfam database...	0.29	0.31	0.28	29	64875	80	23	53	4	65
TMR_00404	tmRNA links to Rfam database...	0.21	0.23	0.20	21	67425	94	23	59	12	71
TMR_00427	tmRNA links to Rfam database...	0.33	0.33	0.33	32	67430	69	11	55	3	65
TMR_00443	tmRNA links to Rfam database...	0.37	0.38	0.36	39	67053	71	13	56	2	65
TMR_00451	tmRNA links to Rfam database...	0.22	0.24	0.21	21	63448	83	14	63	6	68
TMR_00458	tmRNA links to Rfam database...	0.15	0.15	0.15	14	63450	89	19	63	7	79
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.39	41	64514	65	11	54	0	59
TMR_00472	tmRNA links to Rfam database...	0.33	0.33	0.33	32	64523	77	10	55	12	65
TMR_00519	tmRNA links to Rfam database...	0.19	0.20	0.18	19	63084	97	18	69	10	76
TMR_00520	tmRNA links to Rfam database...	0.46	0.46	0.46	46	63090	64	12	42	10	53
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63094	70	11	50	9	62
TMR_00528	tmRNA links to Rfam database...	0.30	0.31	0.29	30	63086	84	20	54	10	67
TMR_00540	tmRNA links to Rfam database...	0.42	0.41	0.43	43	73435	66	10	48	8	61
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.37	34	60633	65	9	50	6	65
TMR_00571	tmRNA links to Rfam database...	0.32	0.32	0.32	32	60626	75	12	56	7	67
TMR_00580	tmRNA links to Rfam database...	0.26	0.26	0.25	26	60624	77	19	57	1	74
TMR_00584	tmRNA links to Rfam database...	0.52	0.51	0.53	49	60982	55	7	37	11	48
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60965	87	18	68	1	73
TMR_00616	tmRNA links to Rfam database...	0.35	0.34	0.35	34	67064	68	14	49	5	65
TMR_00699	tmRNA links to Rfam database...	0.39	0.37	0.40	38	67066	61	7	50	4	64
TMR_00702	tmRNA links to Rfam database...	0.19	0.19	0.20	19	67065	80	17	60	3	81
TMR_00703	tmRNA links to Rfam database...	0.36	0.36	0.37	36	67430	67	12	50	5	63

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

2. Individual counts for MXScarna(20) [ download as .csv ]

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]