CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MXScarna(20)		RNAalifold(seed)
MCC	0.650	>	0.446
Average MCC ± 95% Confidence Intervals	0.649 ± 0.018	>	0.440 ± 0.013
Sensitivity	0.563	>	0.249
Positive Predictive Value	0.752	<	0.799
Total TP	9733	>	4315
Total TN	9706125	<	9713672
Total FP	4196	>	1142
Total FP CONTRA	410	>	178
Total FP INCONS	2803	>	906
Total FP COMP	983	>	58
Total FN	7570	<	12988
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MXScarna(20) and RNAalifold(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(20) and RNAalifold(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MXScarna(20) and RNAalifold(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(20) and RNAalifold(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(20) and RNAalifold(seed)).

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Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

Total Base Pair Counts
Total TP	9733
Total TN	9706125
Total FP	4196
Total FP CONTRA	410
Total FP INCONS	2803
Total FP COMP	983
Total FN	7570

Total Scores
MCC	0.650
Average MCC ± 95% Confidence Intervals	0.649 ± 0.018
Sensitivity	0.563
Positive Predictive Value	0.752
Nr of predictions	162

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2. Individual counts for MXScarna(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	59	47821	19	2	13	4	38
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	75	57889	11	1	5	5	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	44	47510	34	6	26	2	49
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	73	59590	26	2	20	4	37
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.84	81	73824	18	2	13	3	42
ASE_00018	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	86	80491	29	1	23	5	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	58	73842	24	3	17	4	68
ASE_00021	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	101	104081	17	2	12	3	59
ASE_00022	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	82	82925	28	5	16	7	42
ASE_00028	RNaseP_bact_b links to Rfam database...	0.78	0.70	0.87	88	84565	21	4	9	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	67	70403	38	1	29	8	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	77	59250	18	0	13	5	33
ASE_00038	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.62	45	53555	32	3	25	4	56
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	73	78899	38	3	28	7	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	68	57551	17	1	10	6	40
ASE_00042	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.86	102	89982	21	3	13	5	43
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	79	54527	13	4	5	4	26
ASE_00064	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	53	45387	22	1	10	11	36
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	37611	11	2	4	5	27
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	75	67805	21	1	15	5	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	76	108712	26	4	19	3	86
ASE_00077	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	60	45073	22	3	14	5	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	57	43005	17	2	7	8	26
ASE_00080	RNaseP_bact_a links to Rfam database...	0.40	0.33	0.48	40	71548	48	5	38	5	83
ASE_00081	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	65	49691	24	1	13	10	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.41	0.34	0.51	39	70424	44	4	33	7	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	74	62390	24	2	15	7	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	53560	28	2	17	9	50
ASE_00087	RNaseP_bact_a links to Rfam database...	0.42	0.31	0.59	44	88335	37	2	29	6	100
ASE_00090	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	50	55538	27	1	22	4	51
ASE_00092	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.74	59	63466	28	6	15	7	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	82	64517	24	2	19	3	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	79	64164	25	1	17	7	40
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	53	64178	35	0	30	5	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.72	76	73047	36	1	29	6	51
ASE_00115	RNaseP_bact_a links to Rfam database...	0.36	0.28	0.46	28	54554	38	2	31	5	73
ASE_00118	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	41	60662	33	1	22	10	61
ASE_00119	RNaseP_bact_a links to Rfam database...	0.32	0.23	0.44	25	62778	34	0	32	2	83
ASE_00123	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.68	30	38459	16	3	11	2	55
ASE_00125	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.86	38	39296	11	0	6	5	50
ASE_00128	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	56	53236	14	2	7	5	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	70	62740	28	3	22	3	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.78	39	39290	20	1	10	9	46
ASE_00134	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	49	50333	29	1	20	8	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.56	38	63122	41	1	29	11	71
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	57	48132	24	1	15	8	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	48441	23	3	16	4	42
ASE_00138	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.74	49	40404	27	1	16	10	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.41	0.68	51	70801	28	4	20	4	74
ASE_00142	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	90	67059	16	3	9	4	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.74	63	70791	29	1	21	7	61
ASE_00153	RNaseP_nuc links to Rfam database...	0.52	0.45	0.60	33	57575	51	2	20	29	40
ASE_00163	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	57	53232	17	3	9	5	36
ASE_00165	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.64	45	52905	29	3	22	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	47	48749	35	5	27	3	46
ASE_00171	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.51	39	48439	42	1	37	4	55
ASE_00172	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.87	61	58926	15	2	7	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.42	0.34	0.53	37	61005	39	3	30	6	72
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	64	59949	26	3	15	8	43
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	58	44183	18	4	8	6	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	64	51282	20	3	11	6	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	61	57553	24	6	10	8	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.57	43	84179	38	2	31	5	93
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	57	54543	17	4	11	2	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	47	73468	24	3	18	3	81
ASE_00186	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	90	78896	20	1	16	3	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.42	0.64	38	45392	24	5	16	3	52
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	84	89146	27	2	21	4	61
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	58	46594	17	3	10	4	38
ASE_00212	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	100	93844	23	3	14	6	48
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	73	56195	16	4	8	4	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.24	0.19	0.30	19	48453	48	6	38	4	80
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	62	39272	13	1	5	7	20
ASE_00217	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	53	40393	31	1	23	7	37
ASE_00221	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	69	64520	34	1	30	3	48
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	55	46898	26	4	14	8	31
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	61	42417	14	3	5	6	26
ASE_00231	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	44	47832	24	1	18	5	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	61	38437	10	3	2	5	23
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.47	0.73	61	75383	27	3	19	5	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.77	56	64188	22	4	13	5	58
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	60	43890	12	1	5	6	27
ASE_00242	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	75	60976	31	1	23	7	37
ASE_00248	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	78	62383	26	1	19	6	36
ASE_00254	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.87	53	36795	12	4	4	4	29
ASE_00255	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	77	74583	34	3	28	3	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	50	50969	30	3	18	9	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	52	70424	27	4	20	3	68
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	59	45080	20	1	10	9	29
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.30	0.61	38	72328	27	1	23	3	90
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.85	52	55550	14	2	7	5	51
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.96	51	48152	6	0	2	4	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	72	53217	19	3	9	7	29
ASE_00280	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	56	51925	32	1	21	10	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	65	44478	16	3	5	8	23
ASE_00282	RNaseP_bact_a links to Rfam database...	0.51	0.44	0.59	56	77720	43	3	36	4	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.73	55	61701	25	3	17	5	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	58241	15	2	11	2	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	58	68923	28	4	21	3	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	52	46591	31	1	21	9	40
ASE_00287	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	66	54862	25	3	15	7	37
ASE_00292	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	82	81697	39	2	29	8	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	101	114353	34	1	26	7	70
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	79	91700	32	5	22	5	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	48	52902	30	3	22	5	50
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.54	45	67445	43	7	31	5	68
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	31	6	10	15	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.66	0.77	74	72675	33	5	17	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	102	81695	17	4	9	4	36
ASE_00335	RNaseP_bact_b links to Rfam database...	0.69	0.63	0.76	73	75370	33	5	18	10	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.54	0.47	0.62	40	45991	32	4	21	7	45
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.88	86	62383	19	1	11	7	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	58	57893	25	2	17	6	49
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	52	75399	19	1	14	4	75
ASE_00362	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	56	48137	18	3	9	6	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.82	54	51294	22	2	10	10	40
ASE_00364	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.76	61	54205	25	3	16	6	44
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.65	48	58579	29	4	22	3	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	60	42997	20	3	11	6	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.66	54	55863	33	1	27	5	53
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	69	41830	14	0	6	8	15
ASE_00372	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.55	41	51929	36	4	29	3	59
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44783	15	2	10	3	33
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	38	3	33	2	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	57546	13	4	6	3	33
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	22	3	16	3	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	52	41834	29	1	18	10	32
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	75	54530	17	2	8	7	30
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.71	49	48447	24	2	18	4	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	60	50328	22	1	14	7	36
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	57	55865	27	6	17	4	47
ASE_00388	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	50	45689	20	1	13	6	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	58	42128	15	2	7	6	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.77	55	47824	21	1	15	5	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	19	4	8	7	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	54	41553	20	1	8	11	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	52	41551	19	4	9	6	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	74	54534	12	0	7	5	31
ASE_00398	RNaseP_bact_a links to Rfam database...	0.51	0.43	0.61	45	55871	38	1	28	9	59
ASE_00400	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.61	45	57896	33	3	26	4	61
ASE_00401	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.62	51	76946	36	4	27	5	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	50	42418	21	1	17	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	65	55867	19	3	10	6	42
ASE_00404	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	43004	10	0	7	3	25
ASE_00406	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.76	53	48758	26	1	16	9	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.54	0.46	0.63	41	49390	27	2	22	3	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	52	58237	28	2	20	6	53
ASE_00413	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.69	49	44480	29	5	17	7	32
ASE_00415	RNaseP_bact_a links to Rfam database...	0.42	0.35	0.51	36	54876	37	1	33	3	67
ASE_00416	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.68	65	77325	36	6	25	5	62
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	50	54876	23	1	19	3	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	59	46903	14	2	7	5	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	84	56859	16	3	7	6	25
ASE_00428	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.70	73	76532	38	6	25	7	52
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	57	46901	18	2	11	5	40
ASE_00437	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.69	68	79302	35	0	31	4	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	38	64196	33	1	26	6	74
ASE_00448	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	65	64169	33	1	26	6	47
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	87	70778	16	3	8	5	38
RFA_00599	Telomerase-vert links to Rfam database...	0.55	0.52	0.58	58	101375	62	5	37	20	53
RFA_00601	Telomerase-vert links to Rfam database...	0.81	0.80	0.81	91	99123	42	5	16	21	23
RFA_00602	Telomerase-vert links to Rfam database...	0.72	0.72	0.73	83	101361	51	6	25	20	33

^top

Performance of RNAalifold(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RNAalifold(seed)

Total Base Pair Counts
Total TP	4315
Total TN	9713672
Total FP	1142
Total FP CONTRA	178
Total FP INCONS	906
Total FP COMP	58
Total FN	12988

Total Scores
MCC	0.446
Average MCC ± 95% Confidence Intervals	0.440 ± 0.013
Sensitivity	0.249
Positive Predictive Value	0.799
Nr of predictions	162

^top

2. Individual counts for RNAalifold(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.88	22	47870	3	0	3	0	75
ASE_00005	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	30	57932	8	1	7	0	87
ASE_00006	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.83	20	47562	4	0	4	0	73
ASE_00007	RNaseP_bact_a links to Rfam database...	0.52	0.33	0.82	36	59641	8	1	7	0	74
ASE_00012	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.80	32	73880	11	1	7	3	91
ASE_00018	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.82	36	80557	8	1	7	0	98
ASE_00020	RNaseP_bact_a links to Rfam database...	0.36	0.17	0.73	22	73890	8	3	5	0	104
ASE_00021	RNaseP_bact_a links to Rfam database...	0.39	0.18	0.83	29	104161	6	1	5	0	131
ASE_00022	RNaseP_bact_b links to Rfam database...	0.65	0.48	0.89	59	82962	13	1	6	6	65
ASE_00028	RNaseP_bact_b links to Rfam database...	0.65	0.48	0.90	60	84599	12	1	6	5	66
ASE_00035	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.80	33	70459	11	1	7	3	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.81	35	59297	8	1	7	0	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	53599	6	1	5	0	78
ASE_00040	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.82	36	78959	8	1	7	0	97
ASE_00041	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.88	30	57596	4	0	4	0	78
ASE_00042	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.75	33	90056	11	1	10	0	112
ASE_00044	RNaseP_bact_a links to Rfam database...	0.52	0.33	0.81	35	54572	8	1	7	0	70
ASE_00064	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	22	45423	6	1	5	0	67
ASE_00068	RNaseP_bact_a links to Rfam database...	0.37	0.20	0.68	17	37650	8	1	7	0	68
ASE_00074	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	36	67852	8	1	7	0	83
ASE_00075	RNaseP_bact_a links to Rfam database...	0.38	0.19	0.79	30	108773	13	1	7	5	132
ASE_00077	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.75	18	45126	6	1	5	0	68
ASE_00078	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.85	23	43044	6	0	4	2	60
ASE_00080	RNaseP_bact_a links to Rfam database...	0.23	0.11	0.48	14	71602	15	1	14	0	109
ASE_00081	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.79	23	49741	6	1	5	0	74
ASE_00082	RNaseP_bact_a links to Rfam database...	0.34	0.16	0.75	18	70476	6	1	5	0	98
ASE_00083	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	62452	6	1	5	0	87
ASE_00084	RNaseP_bact_a links to Rfam database...	0.43	0.23	0.79	23	53599	6	1	5	0	76
ASE_00087	RNaseP_bact_a links to Rfam database...	0.36	0.16	0.79	23	88381	6	1	5	0	121
ASE_00090	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	55582	6	1	5	0	78
ASE_00092	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.79	23	63517	6	1	5	0	90
ASE_00099	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.82	36	64576	8	1	7	0	84
ASE_00104	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	36	64217	8	1	7	0	83
ASE_00105	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.73	22	64231	8	3	5	0	89
ASE_00107	RNaseP_bact_a links to Rfam database...	0.48	0.28	0.82	36	73109	8	1	7	0	91
ASE_00115	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	22	54587	6	1	5	0	79
ASE_00118	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	22	60698	7	1	5	1	80
ASE_00119	RNaseP_bact_a links to Rfam database...	0.31	0.12	0.81	13	62819	3	1	2	0	95
ASE_00123	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.74	17	38480	6	1	5	0	68
ASE_00125	RNaseP_bact_a links to Rfam database...	0.37	0.16	0.88	14	39324	2	0	2	0	74
ASE_00128	RNaseP_bact_a links to Rfam database...	0.44	0.22	0.88	22	53276	3	1	2	0	78
ASE_00129	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.79	23	62806	6	1	5	0	88
ASE_00131	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.71	17	39316	7	2	5	0	68
ASE_00134	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	50374	6	1	5	0	72
ASE_00135	RNaseP_bact_a links to Rfam database...	0.37	0.19	0.72	21	63161	8	1	7	0	88
ASE_00136	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	48176	6	1	5	0	69
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.22	0.85	22	48490	4	0	4	0	76
ASE_00138	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.79	23	40441	6	1	5	0	58
ASE_00140	RNaseP_bact_a links to Rfam database...	0.36	0.18	0.73	22	70846	8	3	5	0	103
ASE_00142	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.84	36	67118	7	1	6	0	86
ASE_00146	RNaseP_bact_a links to Rfam database...	0.49	0.29	0.82	36	70832	8	1	7	0	88
ASE_00153	RNaseP_nuc links to Rfam database...	0.37	0.21	0.68	15	57608	7	0	7	0	58
ASE_00163	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	53272	6	1	5	0	70
ASE_00165	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.80	20	52950	5	1	4	0	81
ASE_00170	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	48799	6	1	5	0	70
ASE_00171	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	48487	6	1	5	0	71
ASE_00172	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	23	58967	6	1	5	0	83
ASE_00174	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.76	22	61046	7	2	5	0	87
ASE_00175	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.77	23	60001	7	2	5	0	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.77	17	44231	5	1	4	0	67
ASE_00180	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.77	23	51330	7	2	5	0	77
ASE_00181	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.77	23	57600	7	2	5	0	83
ASE_00182	RNaseP_bact_a links to Rfam database...	0.37	0.17	0.79	23	84226	6	1	5	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	54586	6	1	5	0	79
ASE_00185	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.79	23	73507	6	1	5	0	105
ASE_00186	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.75	33	78959	11	1	10	0	99
ASE_00190	RNaseP_bact_b links to Rfam database...	0.66	0.50	0.87	45	45399	12	1	6	5	45
ASE_00197	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.75	33	89209	11	1	10	0	112
ASE_00203	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.77	20	46639	6	2	4	0	76
ASE_00212	RNaseP_bact_a links to Rfam database...	0.40	0.22	0.74	32	93918	11	1	10	0	116
ASE_00214	RNaseP_bact_a links to Rfam database...	0.35	0.17	0.72	18	56255	7	2	5	0	85
ASE_00215	RNaseP_bact_a links to Rfam database...	0.36	0.17	0.74	17	48493	6	1	5	0	82
ASE_00216	RNaseP_bact_a links to Rfam database...	0.46	0.24	0.87	20	39317	3	0	3	0	62
ASE_00217	RNaseP_bact_a links to Rfam database...	0.51	0.33	0.79	30	40432	8	1	7	0	60
ASE_00221	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.82	36	64576	8	1	7	0	81
ASE_00228	RNaseP_bact_a links to Rfam database...	0.47	0.26	0.88	22	46946	3	0	3	0	64
ASE_00229	RNaseP_bact_a links to Rfam database...	0.47	0.25	0.88	22	42461	3	0	3	0	65
ASE_00231	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.88	22	47870	3	0	3	0	74
ASE_00232	RNaseP_bact_a links to Rfam database...	0.48	0.26	0.88	22	38478	3	0	3	0	62
ASE_00234	RNaseP_bact_a links to Rfam database...	0.35	0.17	0.73	22	75436	8	3	5	0	107
ASE_00238	RNaseP_bact_a links to Rfam database...	0.38	0.19	0.73	22	64231	8	3	5	0	92
ASE_00241	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.79	23	43927	6	1	5	0	64
ASE_00242	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	36	61031	8	1	7	0	76
ASE_00248	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	36	62437	8	1	7	0	78
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.27	0.88	22	36831	3	0	3	0	60
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.81	35	74648	8	1	7	0	95
ASE_00257	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.79	23	51011	6	1	5	0	74
ASE_00263	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.79	23	70471	6	1	5	0	97
ASE_00267	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	45121	6	1	5	0	65
ASE_00270	RNaseP_bact_a links to Rfam database...	0.22	0.09	0.52	12	72367	12	1	10	1	116
ASE_00274	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.73	22	55581	8	3	5	0	81
ASE_00277	RNaseP_bact_a links to Rfam database...	0.42	0.24	0.73	22	48175	8	3	5	0	69
ASE_00279	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.79	23	53272	6	1	5	0	78
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.86	18	51982	3	1	2	0	80
ASE_00281	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	44522	6	1	5	0	65
ASE_00282	RNaseP_bact_a links to Rfam database...	0.37	0.18	0.77	23	77785	7	2	5	0	104
ASE_00283	RNaseP_bact_a links to Rfam database...	0.35	0.17	0.75	18	61752	6	1	5	0	89
ASE_00284	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.77	23	58281	7	2	5	0	85
ASE_00285	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.79	23	68977	6	1	5	0	99
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.24	0.79	22	46637	6	1	5	0	70
ASE_00287	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	54917	6	1	5	0	80
ASE_00292	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	36	81766	8	1	7	0	102
ASE_00294	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.82	36	114437	8	1	7	0	135
ASE_00296	RNaseP_bact_a links to Rfam database...	0.45	0.25	0.82	36	91762	8	1	7	0	109
ASE_00297	RNaseP_bact_a links to Rfam database...	0.43	0.23	0.79	23	52946	6	1	5	0	75
ASE_00298	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.79	23	67499	6	1	5	0	90
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.48	0.89	57	80136	13	1	6	6	61
ASE_00328	RNaseP_bact_b links to Rfam database...	0.69	0.54	0.90	60	72704	12	1	6	5	52
ASE_00332	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	36	81766	8	1	7	0	102
ASE_00335	RNaseP_bact_b links to Rfam database...	0.68	0.52	0.90	60	75399	12	1	6	5	56
ASE_00340	RNaseP_bact_a links to Rfam database...	0.43	0.21	0.86	18	46035	3	0	3	0	67
ASE_00342	RNaseP_bact_a links to Rfam database...	0.51	0.31	0.82	36	62437	8	1	7	0	79
ASE_00353	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.77	23	57940	7	2	5	0	84
ASE_00361	RNaseP_bact_a links to Rfam database...	0.36	0.17	0.76	22	75437	7	2	5	0	105
ASE_00362	RNaseP_bact_a links to Rfam database...	0.45	0.25	0.79	23	48176	6	1	5	0	68
ASE_00363	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	51331	6	1	5	0	71
ASE_00364	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.77	23	54255	7	2	5	0	82
ASE_00366	RNaseP_bact_a links to Rfam database...	0.36	0.18	0.72	18	58628	7	2	5	0	80
ASE_00367	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	43042	6	1	5	0	63
ASE_00369	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	55916	6	1	5	0	84
ASE_00370	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.76	22	41876	7	1	6	0	62
ASE_00372	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.76	22	51974	7	1	6	0	78
ASE_00374	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	44821	6	1	5	0	65
ASE_00376	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	56924	6	1	5	0	82
ASE_00377	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.77	23	57600	7	2	5	0	84
ASE_00379	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	46027	6	1	5	0	66
ASE_00382	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.79	23	41876	6	1	5	0	61
ASE_00383	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	54586	6	1	5	0	82
ASE_00384	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	48487	6	1	5	0	69
ASE_00386	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	50374	6	1	5	0	73
ASE_00387	RNaseP_bact_a links to Rfam database...	0.38	0.20	0.72	21	55916	8	1	7	0	83
ASE_00388	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.79	23	45724	6	1	5	0	66
ASE_00390	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	42166	6	1	5	0	62
ASE_00393	RNaseP_bact_a links to Rfam database...	0.40	0.23	0.72	21	47866	8	1	7	0	72
ASE_00394	RNaseP_bact_a links to Rfam database...	0.44	0.25	0.79	23	46942	6	1	5	0	70
ASE_00395	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.79	23	41587	6	1	5	0	61
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.79	23	41587	6	1	5	0	60
ASE_00397	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	54586	6	1	5	0	82
ASE_00398	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.79	23	55916	6	1	5	0	81
ASE_00400	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.79	23	57941	6	1	5	0	83
ASE_00401	RNaseP_bact_a links to Rfam database...	0.33	0.14	0.75	18	77004	6	1	5	0	108
ASE_00402	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	42457	6	1	5	0	62
ASE_00403	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	23	55916	6	1	5	0	84
ASE_00404	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	23	43042	6	1	5	0	62
ASE_00406	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	48799	6	1	5	0	71
ASE_00411	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.69	22	49423	10	5	5	0	67
ASE_00412	RNaseP_bact_a links to Rfam database...	0.39	0.21	0.73	22	58281	8	3	5	0	83
ASE_00413	RNaseP_bact_a links to Rfam database...	0.46	0.27	0.79	22	44523	6	1	5	0	59
ASE_00415	RNaseP_bact_a links to Rfam database...	0.33	0.17	0.68	17	54921	8	1	7	0	86
ASE_00416	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.80	35	77377	9	1	8	0	92
ASE_00419	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.73	22	54916	8	2	6	0	81
ASE_00422	RNaseP_bact_a links to Rfam database...	0.40	0.19	0.86	18	46950	3	0	3	0	76
ASE_00423	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.81	35	56910	8	1	7	0	74
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.28	0.80	35	76592	9	1	8	0	90
ASE_00430	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.83	20	46947	4	0	4	0	77
ASE_00437	RNaseP_bact_a links to Rfam database...	0.30	0.17	0.55	23	79359	19	1	18	0	112
ASE_00441	RNaseP_bact_a links to Rfam database...	0.38	0.19	0.78	21	64234	7	1	5	1	91
ASE_00448	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.77	34	64217	10	1	9	0	78
ASE_00451	RNaseP_bact_a links to Rfam database...	0.48	0.29	0.82	36	70832	8	1	7	0	89
RFA_00599	Telomerase-vert links to Rfam database...	0.79	0.66	0.95	73	101398	7	0	4	3	38
RFA_00601	Telomerase-vert links to Rfam database...	0.79	0.67	0.93	76	99153	10	0	6	4	38
RFA_00602	Telomerase-vert links to Rfam database...	0.76	0.65	0.90	75	101392	11	0	8	3	41

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

2. Individual counts for MXScarna(20) [ download as .csv ]

Performance of RNAalifold(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RNAalifold(seed)

2. Individual counts for RNAalifold(seed) [ download as .csv ]