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The results of your job 'run1' are ready.


Structure after analysis:
[run1.pdb]

Secondary structure of a given structure:

((.(..(((...(((.((.).).))).))).)))((......)).

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Download: [.vienna file with the secondary structure]

Geometry of the structure:

        Unusual bond lengths:
- Residue 44 (X[G]:C1',X[G]:N9): 2.07
- Residue 12 (X[A]:C1',X[A]:N9): 1.57
- Residue 14 (X[A]:C1',X[A]:N9): 1.72
- Residue 16 (X[A]:C1',X[A]:N9): 1.59
- Residue 18 (X[A]:C1',X[A]:N9): 1.39
- Residue 45 (X[A]:C1',X[A]:N9): 2.60
- Residues 8 --- 7 (X:O3',X+1:P): 1.18
- Residues 10 --- 11 (X:O3',X+1:P): 1.50
- Residues 13 --- 14 (X:O3',X+1:P): 1.50
- Residues 15 --- 16 (X:O3',X+1:P): 1.82
- Residues 17 --- 16 (X:O3',X+1:P): 1.49
- Residues 20 --- 21 (X:O3',X+1:P): 1.35
- Residues 22 --- 21 (X:O3',X+1:P): 1.95
- Residues 25 --- 24 (X:O3',X+1:P): 1.41
- Residues 26 --- 25 (X:O3',X+1:P): 1.39
- Residues 31 --- 32 (X:O3',X+1:P): 1.85
- Residues 32 --- 33 (X:O3',X+1:P): 1.87
- Residues 35 --- 34 (X:O3',X+1:P): 1.36
- Residues 35 --- 36 (X:O3',X+1:P): 1.34
- Residues 39 --- 38 (X:O3',X+1:P): 1.47
- Residues 39 --- 40 (X:O3',X+1:P): 1.82
- Residues 42 --- 41 (X:O3',X+1:P): 1.49
- Residues 44 --- 45 (X:O3',X+1:P): 1.49

Unusual bond angles:
- Residue 16 (X[A]:C1',X[A]:N9,X[A]:C8): 136.96
- Residue 45 (X[A]:C1',X[A]:N9,X[A]:C8): 76.66
- Residues 1 --- 2 (X:O3',X+1:P,X+1:O5'): 59.03
- Residues 3 --- 2 (X:O3',X+1:P,X+1:O5'): 89.72
- Residues 4 --- 5 (X:O3',X+1:P,X+1:O5'): 79.31
- Residues 6 --- 5 (X:O3',X+1:P,X+1:O5'): 81.46
- Residues 8 --- 7 (X:O3',X+1:P,X+1:O5'): 141.37
- Residues 10 --- 9 (X:O3',X+1:P,X+1:O5'): 60.76
- Residues 10 --- 11 (X:O3',X+1:P,X+1:O5'): 126.01
- Residues 12 --- 11 (X:O3',X+1:P,X+1:O5'): 88.38
- Residues 13 --- 14 (X:O3',X+1:P,X+1:O5'): 65.54
- Residues 15 --- 16 (X:O3',X+1:P,X+1:O5'): 127.71
- Residues 17 --- 16 (X:O3',X+1:P,X+1:O5'): 125.14
- Residues 18 --- 19 (X:O3',X+1:P,X+1:O5'): 72.50
- Residues 20 --- 21 (X:O3',X+1:P,X+1:O5'): 83.17
- Residues 22 --- 21 (X:O3',X+1:P,X+1:O5'): 134.74
- Residues 22 --- 23 (X:O3',X+1:P,X+1:O5'): 77.46
- Residues 24 --- 23 (X:O3',X+1:P,X+1:O5'): 85.55
- Residues 25 --- 24 (X:O3',X+1:P,X+1:O5'): 128.09
- Residues 26 --- 25 (X:O3',X+1:P,X+1:O5'): 71.50
- Residues 26 --- 27 (X:O3',X+1:P,X+1:O5'): 76.50
- Residues 28 --- 27 (X:O3',X+1:P,X+1:O5'): 134.84
- Residues 30 --- 29 (X:O3',X+1:P,X+1:O5'): 70.65
- Residues 31 --- 30 (X:O3',X+1:P,X+1:O5'): 81.35
- Residues 35 --- 34 (X:O3',X+1:P,X+1:O5'): 81.20
- Residues 35 --- 36 (X:O3',X+1:P,X+1:O5'): 78.73
- Residues 40 --- 41 (X:O3',X+1:P,X+1:O5'): 134.70
- Residues 42 --- 41 (X:O3',X+1:P,X+1:O5'): 84.68
- Residues 44 --- 45 (X:O3',X+1:P,X+1:O5'): 79.23

Unusual dihedral angles:
- Residues 39 --- 40 (X:O3',X+1:P,X+1:O5',X+1:C5'): 336.52
- Residue 22 (X:O5',X:C5',X:C4',X:C3'): 257.78
- Residue 39 (X:O5',X:C5',X:C4',X:C3'): 96.57
- Residue 16 (X:C5',X:C4',X:C3',X:O3'): 113.97


Clashing residues:
- Residues 25 (U) --- 26 (U) 
- Residues 44 (G) --- 45 (A) 
- Residues 7 (U) --- 8 (G) 
- Residues 20 (U) --- 21 (U) 
- Residues 35 (C) --- 36 (A) 
- Residues 34 (C) --- 35 (C) 
- Residues 6 (G) --- 31 (G) 

    
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