General Data

RNA Type	tRNA
SOTerm	SO:0000264
Original Source	tdbR00000269
Secondary Structure	(((((((..(((...........)))((((((.......))))))((((....)))).(((((.......))))))))))))....
Sequence (UNICHARACTER ENCODING)	GUCAGLAUGLCMGAGUGGDCPAAGGCRCCAGACU..AKKPPUGGJJPPCGGAUGGAG??UGGGTTPGѢѢUCCCACUUCUGACACCA
Sequence (SHORT NAMES ENCODING)	GUCAGpm2GAUGpm2GCpac4CGAGUGGpDCpYAAGGCpm2,2GCCAGACUNNApm1Gpm1GpYpYUGGpUmpUmpYpYCGGAUGGAGpm5Cpm5CUGGGpm5Upm5UpYGpm1Apm1AUCCCACUUCUGACACCA
Sequence (MODOMICS CODE ENCODING)	GUCAG2000002551GAUG2000002551GC2000042551CGAGUGG2000008551UC2000009551UAAGGC2000022551GCCAGACU2000000000N2000000000NA2000001551G2000001551G2000009551U2000009551UUGG2000090551U2000090551U2000009551U2000009551UCGGAUGGAG2000005551C2000005551CUGGG2000005551U2000005551U2000009551UG2000001551A2000001551AUCCCACUUCUGACACCA
Consensus Secondary Structure	.(((((((..((((......[....)))).(((((.......)))))........................(((((..]....))))))))))))....
Alignment with Modification	-GUCAGLAUGLCMGAGU--GGDCPAAGGCRCCAGACU..AKKPPUGGJJPPCGGAUGGAG?----------?UGGGTTPGѢѢUCCCACUUCUGACACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

RNA-2D Representation

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the alignment	6	10	12	20	20B	26	34	35	37	38	39	40	44	45	45A	45B	45L	49	54	55	56	58	59
Position in the sequence	6	10	12	19	21	27	35	36	38	39	40	41	45	46	47	48	58	59	64	65	66	68	69
Modification positions	m2G	m2G	ac4C	D	Y	m2,2G	N	N	m1G	m1G	Y	Y	Um	Um	Y	Y	m5C	m5C	m5U	m5U	Y	m1A	m1A
Level of Experimental Evidence	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Level of Experimental Reliability	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5	5
Source	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS	MODOMICS