2026-05-18 20:36:03 NPdock start
2026-05-18 20:36:03 ver: server
2026-05-18 20:36:03 mode: 11111
2026-05-18 20:36:03 is RNA? 1
2026-05-18 20:36:03 Interface: prot: '' na: ''
2026-05-18 20:36:03 Curr dir:/home/rpdock/web/media/jobs/ade8f6f8-6d12-4652-ab2b-b32502c45b4e/
2026-05-18 20:36:03 GRAMM in progress...
2026-05-18 20:36:03 python /home/rpdock/run_gramm//run_gramm1.py -d 20000 -p prot.pdb -r na.pdb  -pi '' -ri '' -n 1 -pf '*' -rf '*'
2026-05-18 21:11:43 /usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=3) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=4) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=5) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=6) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=7) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=8) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=9) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '10' for Atom (name=10) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '11' for Atom (name=11) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '12' for Atom (name=12) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '13' for Atom (name=13) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '14' for Atom (name=14) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '15' for Atom (name=15) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '16' for Atom (name=16) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '17' for Atom (name=17) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '18' for Atom (name=18) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '19' for Atom (name=19) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '20' for Atom (name=20) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '21' for Atom (name=21) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '22' for Atom (name=22) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '23' for Atom (name=23) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '24' for Atom (name=24) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '25' for Atom (name=25) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '26' for Atom (name=26) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '27' for Atom (name=27) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '28' for Atom (name=28) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '29' for Atom (name=29) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '30' for Atom (name=30) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '31' for Atom (name=31) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '32' for Atom (name=32) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '33' for Atom (name=33) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '34' for Atom (name=34) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '35' for Atom (name=35) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '36' for Atom (name=36) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '37' for Atom (name=37) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '38' for Atom (name=38) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '39' for Atom (name=39) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '40' for Atom (name=40) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '41' for Atom (name=41) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '42' for Atom (name=42) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '43' for Atom (name=43) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '44' for Atom (name=44) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '45' for Atom (name=45) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '46' for Atom (name=46) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '47' for Atom (name=47) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '48' for Atom (name=48) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '49' for Atom (name=49) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '50' for Atom (name=50) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '51' for Atom (name=51) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '52' for Atom (name=52) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '53' for Atom (name=53) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '54' for Atom (name=54) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '55' for Atom (name=55) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '56' for Atom (name=56) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '57' for Atom (name=57) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '58' for Atom (name=58) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '59' for Atom (name=59) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '60' for Atom (name=60) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '61' for Atom (name=61) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '62' for Atom (name=62) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '63' for Atom (name=63) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '64' for Atom (name=64) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '65' for Atom (name=65) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '66' for Atom (name=66) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '67' for Atom (name=67) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '68' for Atom (name=68) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '69' for Atom (name=69) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '70' for Atom (name=70) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '71' for Atom (name=71) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '72' for Atom (name=72) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '73' for Atom (name=73) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '74' for Atom (name=74) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '75' for Atom (name=75) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '76' for Atom (name=76) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '77' for Atom (name=77) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '78' for Atom (name=78) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '79' for Atom (name=79) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '80' for Atom (name=80) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '81' for Atom (name=81) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '82' for Atom (name=82) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '83' for Atom (name=83) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '84' for Atom (name=84) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '85' for Atom (name=85) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '86' for Atom (name=86) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '87' for Atom (name=87) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '88' for Atom (name=88) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '89' for Atom (name=89) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '90' for Atom (name=90) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '91' for Atom (name=91) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '92' for Atom (name=92) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '93' for Atom (name=93) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '94' for Atom (name=94) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '95' for Atom (name=95) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '96' for Atom (name=96) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '97' for Atom (name=97) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '98' for Atom (name=98) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '99' for Atom (name=99) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=100) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=101) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=102) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=103) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=104) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=105) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=106) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=107) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=108) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=109) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=110) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=111) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=112) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=113) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=114) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=115) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=116) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=117) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=118) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=119) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=120) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=121) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=122) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=123) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=124) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=125) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=126) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=127) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=128) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=129) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=130) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=131) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=132) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=133) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=134) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=135) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=136) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=137) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=138) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=139) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=140) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=141) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=142) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=143) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=144) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=145) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=146) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=147) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=148) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=149) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=150) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=151) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=152) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=153) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=154) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=155) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=156) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=157) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=158) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=159) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=160) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=161) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=162) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=163) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=164) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=165) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=166) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=167) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=168) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=169) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=170) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=171) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=172) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=173) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=174) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=175) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=176) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=177) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=178) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=179) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=180) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=181) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=182) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=183) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=184) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=185) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=186) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=187) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=188) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=189) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=190) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=191) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=192) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=193) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=194) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=195) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=196) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=197) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=198) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=199) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=200) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=201) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=202) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=203) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=204) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=205) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=206) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=207) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=208) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=209) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=210) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=211) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=212) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=213) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=214) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=215) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=216) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=217) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=218) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=219) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=220) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=221) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=222) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=223) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=224) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=225) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=226) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=227) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=228) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=229) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=230) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=231) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=232) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=233) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=234) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=235) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=236) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=237) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=238) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=239) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=240) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=241) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=242) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=243) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=244) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=245) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=246) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=247) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=248) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=249) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=250) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=251) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=252) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=253) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=254) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=255) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=256) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=257) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=258) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=259) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=260) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=261) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=262) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=263) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=264) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=265) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=266) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=267) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=268) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=269) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=270) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=271) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=272) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=273) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=274) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=275) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=276) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=277) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=278) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=279) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=280) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=281) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=282) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=283) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=284) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=285) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=286) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=287) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=288) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=289) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=290) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=291) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=292) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=293) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=294) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=295) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=296) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=297) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=298) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=299) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=300) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=301) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=302) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=303) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=304) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=305) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=306) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=307) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=308) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=309) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=310) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=311) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=312) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=313) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=314) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=315) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=316) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=317) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=318) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=319) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=320) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=321) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=322) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=323) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=324) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=325) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=326) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=327) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=328) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=329) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=330) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=331) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=332) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=333) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=334) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=335) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=336) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=337) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=338) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=339) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=340) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=341) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=342) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=343) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=344) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=345) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=346) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=347) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=348) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=349) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=350) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=351) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=352) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=353) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=354) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=355) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=356) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=357) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=358) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=359) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=360) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=361) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=362) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=363) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=364) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=365) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=366) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=367) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=368) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=369) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=370) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=371) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=372) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=373) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=374) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=375) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=376) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=377) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=378) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=379) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=380) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=381) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=382) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=383) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=384) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=385) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=386) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=387) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=388) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=389) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=390) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=391) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=392) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=393) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=394) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=395) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=396) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=397) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=398) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=399) with given element '3'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=400) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=401) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=402) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=403) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=404) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=405) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=406) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=407) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=408) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=409) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=410) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=411) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=412) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=413) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=414) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=415) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=416) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=417) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=418) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=419) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=420) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=421) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=422) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=423) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=424) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=425) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=426) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=427) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=428) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=429) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=430) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=431) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=432) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=433) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=434) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=435) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=436) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=437) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=438) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=439) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=440) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=441) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=442) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=443) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=444) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=445) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=446) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=447) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=448) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=449) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=450) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=451) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=452) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=453) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=454) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=455) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=456) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=457) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=458) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=459) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=460) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=461) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=462) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=463) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=464) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=465) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=466) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=467) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=468) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=469) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=470) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=471) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=472) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=473) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=474) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=475) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=476) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=477) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=478) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=479) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=480) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=481) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=482) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=483) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=484) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=485) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=486) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=487) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=488) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=489) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=490) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=491) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=492) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=493) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=494) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=495) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=496) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=497) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=498) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=499) with given element '4'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=500) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=501) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=502) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=503) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=504) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=505) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=506) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=507) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=508) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=509) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=510) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=511) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=512) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=513) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=514) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=515) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=516) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=517) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=518) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=519) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=520) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=521) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=522) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=523) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=524) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=525) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=526) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=527) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=528) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=529) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=530) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=531) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=532) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=533) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=534) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=535) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=536) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=537) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=538) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=539) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=540) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=541) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=542) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=543) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=544) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=545) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=546) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=547) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=548) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=549) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=550) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=551) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=552) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=553) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=554) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=555) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=556) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=557) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=558) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=559) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=560) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=561) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=562) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=563) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=564) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=565) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=566) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=567) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=568) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=569) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=570) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=571) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=572) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=573) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=574) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=575) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=576) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=577) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=578) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=579) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=580) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=581) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=582) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=583) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=584) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=585) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=586) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=587) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=588) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=589) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=590) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=591) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=592) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=593) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=594) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=595) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=596) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=597) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=598) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=599) with given element '5'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=600) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=601) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=602) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=603) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=604) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=605) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=606) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=607) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=608) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=609) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=610) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=611) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=612) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=613) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=614) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=615) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=616) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=617) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=618) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=619) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=620) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=621) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=622) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=623) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=624) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=625) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=626) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=627) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=628) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=629) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=630) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=631) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=632) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=633) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=634) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=635) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=636) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=637) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=638) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=639) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=640) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=641) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=642) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=643) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=644) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=645) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=646) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=647) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=648) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=649) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=650) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=651) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=652) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=653) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=654) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=655) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=656) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=657) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=658) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=659) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=660) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=661) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=662) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=663) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=664) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=665) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=666) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=667) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=668) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=669) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=670) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=671) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=672) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=673) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=674) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=675) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=676) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=677) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=678) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=679) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=680) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=681) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=682) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=683) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=684) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=685) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=686) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=687) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=688) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=689) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=690) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=691) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=692) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=693) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=694) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=695) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=696) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=697) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=698) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=699) with given element '6'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=700) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=701) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=702) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=703) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=704) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=705) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=706) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=707) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=708) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=709) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=710) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=711) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=712) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=713) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=714) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=715) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=716) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=717) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=718) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=719) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=720) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=721) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=722) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=723) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=724) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=725) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=726) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=727) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=728) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=729) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=730) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=731) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=732) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=733) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=734) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=735) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=736) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=737) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=738) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=739) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=740) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=741) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=742) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=743) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=744) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=745) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=746) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=747) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=748) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=749) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=750) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=751) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=752) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=753) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=754) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=755) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=756) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=757) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=758) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=759) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=760) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=761) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=762) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=763) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=764) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=765) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=766) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=767) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=768) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=769) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=770) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=771) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=772) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=773) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=774) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=775) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=776) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=777) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=778) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=779) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=780) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=781) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=782) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=783) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=784) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=785) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=786) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=787) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=788) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=789) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=790) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=791) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=792) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=793) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=794) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=795) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=796) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=797) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=798) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=799) with given element '7'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=800) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=801) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=802) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=803) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=804) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=805) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=806) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=807) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=808) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=809) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=810) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=811) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=812) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=813) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=814) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=815) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=816) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=817) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=818) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=819) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=820) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=821) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=822) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=823) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=824) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=825) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=826) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=827) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=828) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=829) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=830) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=831) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=832) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=833) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=834) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=835) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=836) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=837) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=838) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=839) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=840) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=841) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=842) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=843) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=844) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=845) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=846) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=847) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=848) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=849) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=850) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=851) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=852) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=853) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=854) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=855) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=856) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=857) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=858) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=859) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=860) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=861) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=862) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=863) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=864) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=865) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=866) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=867) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=868) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=869) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=870) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=871) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=872) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=873) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=874) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=875) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=876) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=877) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=878) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=879) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=880) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=881) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=882) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=883) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=884) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=885) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=886) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=887) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=888) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=889) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=890) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=891) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=892) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=893) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=894) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=895) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=896) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=897) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=898) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=899) with given element '8'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=900) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=901) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=902) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=903) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=904) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=905) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=906) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=907) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=908) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=909) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=910) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=911) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=912) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=913) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=914) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=915) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=916) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=917) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=918) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=919) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=920) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=921) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=922) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=923) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=924) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=925) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=926) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=927) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=928) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=929) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=930) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=931) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=932) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=933) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=934) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=935) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=936) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=937) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=938) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=939) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=940) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=941) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=942) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=943) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=944) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=945) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=946) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=947) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=948) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=949) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=950) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=951) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=952) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=953) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=954) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=955) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=956) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=957) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=958) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=959) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=960) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=961) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=962) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=963) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=964) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=965) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=966) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=967) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=968) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=969) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=970) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=971) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=972) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=973) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=974) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=975) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=976) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=977) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=978) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=979) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=980) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=981) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=982) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=983) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=984) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=985) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=986) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=987) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=988) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=989) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=990) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=991) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=992) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=993) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=994) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=995) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=996) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=997) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=998) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=999) with given element '9'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1000) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1001) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1002) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1003) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1004) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1005) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1006) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1007) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1008) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1009) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1010) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1011) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1012) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1013) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1014) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1015) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1016) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1017) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1018) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1019) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1020) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1021) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1022) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1023) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1024) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1025) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1026) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1027) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1028) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1029) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1030) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1031) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1032) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1033) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1034) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1035) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1036) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1037) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1038) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1039) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1040) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1041) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1042) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1043) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1044) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1045) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1046) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1047) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1048) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1049) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1050) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1051) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1052) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1053) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1054) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1055) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1056) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1057) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1058) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1059) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1060) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1061) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1062) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1063) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1064) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1065) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1066) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1067) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1068) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1069) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1070) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1071) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1072) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1073) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1074) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1075) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1076) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1077) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1078) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1079) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1080) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1081) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1082) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1083) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1084) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1085) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1086) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1087) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1088) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1089) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1090) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1091) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1092) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1093) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1094) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1095) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1096) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1097) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1098) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=1099) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1100) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1101) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1102) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1103) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1104) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1105) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1106) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1107) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1108) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1109) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1110) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1111) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1112) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1113) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1114) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1115) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1116) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1117) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1118) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1119) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1120) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1121) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1122) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1123) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1124) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1125) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1126) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1127) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1128) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1129) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1130) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1131) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1132) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1133) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1134) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1135) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1136) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1137) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1138) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1139) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1140) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1141) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1142) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1143) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1144) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1145) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1146) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1147) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1148) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1149) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1150) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1151) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1152) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1153) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1154) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1155) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1156) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1157) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1158) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1159) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1160) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1161) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1162) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1163) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1164) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1165) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1166) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1167) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1168) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1169) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1170) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1171) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1172) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1173) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1174) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1175) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1176) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1177) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1178) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1179) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1180) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1181) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1182) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1183) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1184) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1185) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1186) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1187) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1188) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1189) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1190) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1191) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1192) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1193) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1194) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1195) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1196) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1197) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1198) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=1199) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1200) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1201) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1202) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1203) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1204) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1205) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1206) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1207) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1208) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1209) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1210) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1211) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1212) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1213) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1214) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1215) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1216) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1217) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1218) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1219) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1220) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1221) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1222) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1223) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1224) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1225) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1226) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1227) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1228) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1229) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1230) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1231) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1232) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1233) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1234) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1235) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1236) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1237) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1238) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1239) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1240) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1241) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1242) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1243) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1244) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1245) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1246) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1247) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1248) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1249) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1250) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1251) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1252) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1253) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1254) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1255) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1256) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1257) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1258) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1259) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1260) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1261) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1262) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1263) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1264) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1265) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1266) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1267) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1268) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1269) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1270) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1271) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1272) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1273) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1274) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1275) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1276) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1277) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1278) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1279) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1280) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1281) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1282) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1283) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1284) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1285) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1286) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1287) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1288) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1289) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1290) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1291) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1292) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1293) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1294) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1295) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1296) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1297) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1298) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=1299) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1300) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1301) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1302) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1303) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1304) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1305) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1306) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1307) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1308) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1309) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1310) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1311) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1312) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1313) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1314) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1315) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1316) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1317) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1318) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1319) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1320) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1321) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1322) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1323) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1324) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1325) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1326) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1327) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1328) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1329) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1330) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1331) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1332) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1333) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1334) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1335) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1336) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1337) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1338) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1339) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1340) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1341) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1342) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1343) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1344) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1345) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1346) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1347) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1348) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1349) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1350) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1351) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1352) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1353) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1354) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1355) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1356) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1357) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1358) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1359) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1360) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1361) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1362) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1363) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1364) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1365) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1366) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1367) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1368) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1369) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1370) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1371) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1372) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1373) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1374) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1375) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1376) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1377) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1378) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1379) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1380) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1381) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1382) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1383) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1384) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1385) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1386) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1387) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1388) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1389) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1390) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1391) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1392) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1393) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1394) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1395) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1396) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1397) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1398) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=1399) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1400) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1401) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1402) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1403) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1404) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1405) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1406) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1407) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1408) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1409) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1410) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1411) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1412) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1413) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1414) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1415) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1416) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1417) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1418) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1419) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1420) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1421) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1422) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1423) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1424) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1425) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1426) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1427) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1428) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1429) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1430) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1431) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1432) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1433) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1434) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1435) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1436) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1437) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1438) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1439) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1440) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1441) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1442) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1443) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1444) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1445) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1446) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1447) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1448) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1449) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1450) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1451) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1452) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1453) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1454) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1455) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1456) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1457) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1458) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1459) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1460) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1461) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1462) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1463) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1464) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1465) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1466) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1467) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1468) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1469) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1470) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1471) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1472) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1473) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1474) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1475) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1476) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1477) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1478) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1479) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1480) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1481) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1482) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1483) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1484) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1485) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1486) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1487) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1488) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1489) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1490) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1491) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1492) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1493) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1494) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1495) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1496) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1497) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1498) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=1499) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1500) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1501) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1502) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1503) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1504) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1505) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1506) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1507) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1508) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1509) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1510) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1511) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1512) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1513) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1514) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1515) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1516) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1517) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1518) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1519) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1520) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1521) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1522) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1523) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1524) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1525) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1526) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1527) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1528) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1529) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1530) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1531) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1532) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1533) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1534) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1535) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1536) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1537) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1538) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1539) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1540) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1541) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1542) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1543) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1544) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1545) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1546) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1547) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1548) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1549) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1550) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1551) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1552) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1553) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1554) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1555) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1556) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1557) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1558) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1559) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1560) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1561) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1562) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1563) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1564) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1565) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1566) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1567) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1568) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1569) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1570) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1571) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1572) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1573) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1574) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1575) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1576) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1577) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1578) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1579) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1580) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1581) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1582) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1583) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1584) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1585) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1586) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1587) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1588) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1589) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1590) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1591) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1592) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1593) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1594) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1595) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1596) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1597) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1598) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=1599) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1600) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1601) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1602) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1603) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1604) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1605) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1606) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1607) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1608) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1609) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1610) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1611) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1612) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1613) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1614) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1615) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1616) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1617) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1618) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1619) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1620) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1621) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1622) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1623) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1624) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1625) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1626) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1627) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1628) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1629) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1630) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1631) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1632) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1633) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1634) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1635) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1636) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1637) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1638) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1639) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1640) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1641) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1642) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1643) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1644) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1645) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1646) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1647) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1648) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1649) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1650) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1651) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1652) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1653) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1654) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1655) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1656) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1657) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1658) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1659) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1660) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1661) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1662) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1663) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1664) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1665) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1666) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1667) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1668) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1669) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1670) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1671) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1672) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1673) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1674) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1675) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1676) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1677) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1678) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1679) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1680) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1681) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1682) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1683) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1684) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1685) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1686) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1687) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1688) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1689) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1690) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1691) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1692) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1693) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1694) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1695) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1696) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1697) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1698) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '6' for Atom (name=1699) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1700) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1701) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1702) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1703) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1704) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1705) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1706) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1707) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1708) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1709) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1710) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1711) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1712) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1713) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1714) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1715) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1716) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1717) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1718) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1719) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1720) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1721) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1722) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1723) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1724) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1725) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1726) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1727) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1728) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1729) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1730) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1731) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1732) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1733) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1734) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1735) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1736) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1737) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1738) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1739) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1740) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1741) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1742) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1743) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1744) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1745) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1746) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1747) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1748) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1749) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1750) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1751) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1752) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1753) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1754) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1755) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1756) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1757) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1758) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1759) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1760) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1761) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1762) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1763) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1764) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1765) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1766) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1767) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1768) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1769) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1770) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1771) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1772) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1773) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1774) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1775) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1776) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1777) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1778) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1779) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1780) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1781) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1782) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1783) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1784) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1785) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1786) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1787) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1788) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1789) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1790) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1791) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1792) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1793) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1794) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1795) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1796) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1797) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1798) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '7' for Atom (name=1799) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1800) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1801) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1802) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1803) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1804) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1805) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1806) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1807) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1808) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1809) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1810) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1811) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1812) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1813) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1814) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1815) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1816) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1817) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1818) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1819) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1820) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1821) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1822) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1823) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1824) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1825) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1826) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1827) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1828) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1829) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1830) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1831) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1832) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1833) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1834) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1835) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1836) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1837) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1838) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1839) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1840) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1841) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1842) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1843) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1844) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1845) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1846) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1847) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1848) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1849) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1850) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1851) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1852) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1853) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1854) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1855) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1856) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1857) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1858) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1859) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1860) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1861) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1862) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1863) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1864) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1865) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1866) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1867) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1868) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1869) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1870) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1871) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1872) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1873) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1874) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1875) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1876) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1877) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1878) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1879) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1880) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1881) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1882) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1883) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1884) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1885) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1886) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1887) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1888) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1889) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1890) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1891) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1892) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1893) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1894) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1895) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1896) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1897) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1898) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '8' for Atom (name=1899) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1900) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1901) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1902) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1903) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1904) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1905) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1906) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1907) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1908) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1909) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1910) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1911) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1912) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1913) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1914) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1915) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1916) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1917) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1918) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1919) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1920) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1921) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1922) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1923) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1924) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1925) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1926) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1927) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1928) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1929) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1930) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1931) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1932) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1933) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1934) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1935) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1936) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1937) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1938) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1939) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1940) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1941) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1942) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1943) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1944) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1945) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1946) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1947) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1948) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1949) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1950) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1951) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1952) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1953) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1954) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1955) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1956) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1957) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1958) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1959) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1960) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1961) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1962) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1963) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1964) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1965) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1966) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1967) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1968) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1969) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1970) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1971) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1972) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1973) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1974) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1975) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1976) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1977) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1978) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1979) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1980) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1981) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1982) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1983) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1984) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1985) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1986) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1987) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1988) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1989) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1990) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1991) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1992) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1993) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1994) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1995) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1996) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1997) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1998) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '9' for Atom (name=1999) with given element '1'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2000) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2001) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2002) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2003) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2004) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2005) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2006) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2007) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2008) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2009) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2010) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2011) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2012) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2013) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2014) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2015) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2016) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2017) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2018) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2019) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2020) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2021) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2022) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2023) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2024) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2025) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2026) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2027) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2028) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2029) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2030) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2031) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2032) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2033) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2034) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2035) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2036) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2037) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2038) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2039) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2040) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2041) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2042) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2043) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2044) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2045) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2046) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2047) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2048) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2049) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2050) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2051) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2052) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2053) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2054) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2055) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2056) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2057) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2058) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2059) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2060) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2061) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2062) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2063) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2064) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2065) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2066) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2067) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2068) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2069) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2070) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2071) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2072) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2073) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2074) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2075) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2076) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2077) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2078) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2079) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2080) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2081) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2082) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2083) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2084) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2085) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2086) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2087) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2088) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2089) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2090) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2091) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2092) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2093) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2094) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2095) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2096) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2097) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2098) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '0' for Atom (name=2099) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2100) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2101) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2102) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2103) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2104) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2105) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2106) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2107) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2108) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2109) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2110) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2111) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2112) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2113) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2114) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2115) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2116) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2117) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2118) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2119) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2120) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2121) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2122) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2123) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2124) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2125) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2126) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2127) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2128) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2129) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2130) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2131) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2132) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2133) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2134) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2135) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2136) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2137) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2138) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2139) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2140) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2141) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2142) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2143) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2144) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2145) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2146) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2147) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2148) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2149) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2150) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2151) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2152) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2153) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2154) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2155) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2156) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2157) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2158) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2159) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2160) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2161) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2162) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2163) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2164) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2165) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2166) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2167) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2168) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2169) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2170) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2171) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2172) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2173) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2174) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2175) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2176) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2177) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2178) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2179) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2180) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2181) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2182) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2183) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2184) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2185) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2186) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2187) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2188) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2189) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2190) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2191) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2192) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2193) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2194) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2195) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2196) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2197) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2198) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '1' for Atom (name=2199) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2200) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2201) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2202) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2203) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2204) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2205) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2206) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2207) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2208) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2209) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2210) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2211) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2212) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2213) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2214) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2215) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2216) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2217) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2218) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2219) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2220) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2221) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2222) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2223) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2224) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2225) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2226) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2227) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2228) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2229) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2230) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2231) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2232) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2233) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2234) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2235) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2236) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2237) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2238) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2239) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2240) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2241) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2242) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2243) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2244) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2245) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2246) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2247) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2248) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2249) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2250) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2251) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2252) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2253) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2254) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2255) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2256) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2257) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2258) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2259) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2260) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2261) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2262) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2263) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2264) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2265) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2266) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2267) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2268) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2269) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2270) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2271) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2272) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2273) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2274) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2275) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2276) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2277) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2278) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2279) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2280) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2281) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2282) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2283) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2284) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2285) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2286) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2287) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2288) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2289) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2290) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2291) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2292) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2293) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2294) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2295) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2296) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2297) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2298) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '2' for Atom (name=2299) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2300) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2301) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2302) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2303) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2304) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2305) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2306) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2307) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2308) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2309) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2310) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2311) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2312) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2313) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2314) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2315) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2316) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2317) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2318) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2319) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2320) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2321) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2322) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2323) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2324) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2325) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2326) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2327) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2328) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2329) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2330) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2331) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2332) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2333) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2334) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2335) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2336) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2337) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2338) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2339) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2340) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2341) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2342) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2343) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2344) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2345) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2346) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2347) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2348) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2349) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2350) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2351) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2352) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2353) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2354) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2355) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2356) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2357) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2358) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2359) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2360) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2361) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2362) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2363) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2364) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2365) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2366) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2367) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2368) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2369) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2370) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2371) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2372) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2373) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2374) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2375) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2376) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2377) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2378) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2379) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2380) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2381) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2382) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2383) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2384) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2385) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2386) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2387) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2388) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2389) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2390) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2391) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2392) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2393) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2394) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2395) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2396) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2397) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2398) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '3' for Atom (name=2399) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2400) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2401) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2402) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2403) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2404) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2405) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2406) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2407) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2408) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2409) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2410) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2411) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2412) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2413) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2414) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2415) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2416) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2417) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2418) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2419) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2420) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2421) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2422) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2423) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2424) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2425) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2426) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2427) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2428) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2429) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2430) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2431) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2432) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2433) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2434) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2435) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2436) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2437) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2438) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2439) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2440) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2441) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2442) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2443) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2444) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2445) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2446) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2447) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2448) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2449) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2450) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2451) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2452) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2453) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2454) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2455) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2456) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2457) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2458) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2459) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2460) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2461) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2462) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2463) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2464) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2465) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2466) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2467) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2468) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2469) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2470) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2471) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2472) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2473) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2474) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2475) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2476) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2477) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2478) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2479) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2480) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2481) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2482) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2483) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2484) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2485) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2486) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2487) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2488) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2489) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2490) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2491) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2492) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2493) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2494) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2495) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2496) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2497) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2498) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '4' for Atom (name=2499) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2500) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2501) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2502) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2503) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2504) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2505) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2506) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2507) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2508) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2509) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2510) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2511) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2512) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2513) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2514) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2515) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2516) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2517) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2518) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2519) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2520) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2521) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2522) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2523) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2524) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2525) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2526) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2527) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2528) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2529) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2530) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2531) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2532) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2533) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2534) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2535) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2536) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2537) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2538) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2539) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2540) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2541) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2542) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2543) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2544) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2545) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2546) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2547) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2548) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2549) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2550) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2551) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2552) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2553) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2554) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2555) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2556) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2557) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2558) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2559) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2560) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2561) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2562) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2563) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2564) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2565) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2566) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2567) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2568) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2569) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2570) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2571) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2572) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2573) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2574) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2575) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2576) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2577) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2578) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2579) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2580) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2581) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2582) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)
/usr/local/lib/python2.7/dist-packages/Bio/PDB/Atom.py:99: PDBConstructionWarning: Could not assign element '5' for Atom (name=2583) with given element '2'
  warnings.warn(msg, PDBConstructionWarning)