ClaRNA

Doublet Group distance statistics: 11831

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Distances from reference structure (by RMSD)

38, 19, 2, 3, 9, 0, 1, 1, 1, 6, 4, 3, 4, 2, 24, 19, 96, 35, 3, 65,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.342, 0.718, 1.094, 1.376 max_d=1.376 avg_d=0.718 std_dev=0.376
C5 A 0, 0.446, 0.924, 1.402, 1.919 max_d=1.919 avg_d=0.924 std_dev=0.478
C4 A 0, 0.318, 0.800, 1.282, 1.644 max_d=1.644 avg_d=0.800 std_dev=0.482
C6 A 0, 0.410, 0.936, 1.462, 2.121 max_d=2.121 avg_d=0.936 std_dev=0.526
N9 A 0, 0.503, 1.063, 1.623, 2.425 max_d=2.425 avg_d=1.063 std_dev=0.560
N3 A 0, 0.367, 0.980, 1.592, 2.171 max_d=2.171 avg_d=0.980 std_dev=0.613
C1' B 0, 0.457, 1.113, 1.769, 3.611 max_d=3.611 avg_d=1.113 std_dev=0.656
N6 A 0, 0.529, 1.190, 1.850, 3.049 max_d=3.049 avg_d=1.190 std_dev=0.661
N1 A 0, 0.394, 1.066, 1.737, 2.683 max_d=2.683 avg_d=1.066 std_dev=0.672
N7 A 0, 0.675, 1.362, 2.048, 2.894 max_d=2.894 avg_d=1.362 std_dev=0.686
C8 A 0, 0.669, 1.407, 2.145, 3.191 max_d=3.191 avg_d=1.407 std_dev=0.738
C1' A 0, 0.423, 1.186, 1.948, 3.198 max_d=3.198 avg_d=1.186 std_dev=0.763
C2 A 0, 0.349, 1.117, 1.886, 2.485 max_d=2.485 avg_d=1.117 std_dev=0.768
O4' A 0, 0.545, 1.371, 2.198, 4.067 max_d=4.067 avg_d=1.371 std_dev=0.826
C2 B 0, 0.806, 1.773, 2.739, 3.029 max_d=3.029 avg_d=1.773 std_dev=0.967
C6 B 0, 0.724, 1.743, 2.762, 3.225 max_d=3.225 avg_d=1.743 std_dev=1.019
C4' A 0, 0.605, 1.748, 2.890, 5.717 max_d=5.717 avg_d=1.748 std_dev=1.142
C4 B 0, 0.455, 1.668, 2.880, 4.709 max_d=4.709 avg_d=1.668 std_dev=1.212
C2' A 0, 0.881, 2.104, 3.326, 4.730 max_d=4.730 avg_d=2.104 std_dev=1.223
N3 B 0, 1.014, 2.271, 3.527, 3.772 max_d=3.772 avg_d=2.271 std_dev=1.256
C5 B 0, 0.588, 1.851, 3.114, 4.317 max_d=4.317 avg_d=1.851 std_dev=1.263
C3' A 0, 0.488, 1.763, 3.039, 5.458 max_d=5.458 avg_d=1.763 std_dev=1.276
C2' B 0, 0.600, 1.897, 3.193, 5.527 max_d=5.527 avg_d=1.897 std_dev=1.296
O4' B 0, 1.180, 2.612, 4.044, 5.124 max_d=5.124 avg_d=2.612 std_dev=1.432
O3' A 0, 0.513, 2.022, 3.531, 6.540 max_d=6.540 avg_d=2.022 std_dev=1.509
O2' B 0, 0.395, 1.999, 3.602, 6.786 max_d=6.786 avg_d=1.999 std_dev=1.604
O2 B 0, 1.325, 2.934, 4.543, 4.781 max_d=4.781 avg_d=2.934 std_dev=1.609
N4 B 0, 0.582, 2.378, 4.175, 7.308 max_d=7.308 avg_d=2.378 std_dev=1.797
C3' B 0, 1.248, 3.163, 5.079, 7.281 max_d=7.281 avg_d=3.163 std_dev=1.916
O2' A 0, 1.268, 3.217, 5.165, 6.935 max_d=6.935 avg_d=3.217 std_dev=1.948
C4' B 0, 1.528, 3.534, 5.539, 7.295 max_d=7.295 avg_d=3.534 std_dev=2.005
C5' A 0, 0.627, 2.718, 4.809, 7.610 max_d=7.610 avg_d=2.718 std_dev=2.091
O5' A 0, 0.693, 3.059, 5.424, 8.398 max_d=8.398 avg_d=3.059 std_dev=2.366
O3' B 0, 1.318, 4.144, 6.969, 9.345 max_d=9.345 avg_d=4.144 std_dev=2.825
C5' B 0, 2.276, 5.218, 8.159, 9.557 max_d=9.557 avg_d=5.218 std_dev=2.941
O5' B 0, 2.248, 5.205, 8.162, 9.070 max_d=9.070 avg_d=5.205 std_dev=2.957
P A 0, 0.821, 4.262, 7.703, 11.479 max_d=11.479 avg_d=4.262 std_dev=3.441
OP2 A 0, 1.770, 5.275, 8.780, 12.131 max_d=12.131 avg_d=5.275 std_dev=3.505
OP1 A 0, 1.958, 5.589, 9.221, 12.823 max_d=12.823 avg_d=5.589 std_dev=3.632
OP2 B 0, 2.760, 6.579, 10.397, 11.046 max_d=11.046 avg_d=6.579 std_dev=3.818
P B 0, 2.868, 6.790, 10.712, 10.719 max_d=10.719 avg_d=6.790 std_dev=3.922
OP1 B 0, 3.325, 7.942, 12.558, 12.763 max_d=12.763 avg_d=7.942 std_dev=4.616

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.01 0.02 0.01 0.01 0.08 0.02 0.02 0.03 0.03 0.02 0.01 0.01 0.02 0.33 0.01 0.47 0.61 0.49 0.37
C2 0.03 0.00 0.43 0.52 0.01 0.52 0.01 0.83 0.01 0.02 0.00 0.01 0.01 0.01 0.01 0.56 0.53 0.49 1.01 1.31 1.13 1.05
C2' 0.00 0.43 0.00 0.01 0.23 0.02 0.12 0.21 0.21 0.21 0.34 0.42 0.16 0.11 0.03 0.01 0.04 0.03 0.52 0.73 0.91 0.57
C3' 0.01 0.52 0.01 0.00 0.35 0.01 0.38 0.03 0.43 0.41 0.49 0.47 0.44 0.41 0.24 0.02 0.01 0.02 0.22 0.55 0.62 0.30
C4 0.02 0.01 0.23 0.35 0.00 0.24 0.00 0.37 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.31 0.26 0.25 0.80 1.10 0.76 0.73
C4' 0.01 0.52 0.02 0.01 0.24 0.00 0.16 0.01 0.24 0.34 0.40 0.51 0.20 0.27 0.10 0.31 0.05 0.00 0.02 0.34 0.38 0.11
C5 0.01 0.01 0.12 0.38 0.00 0.16 0.00 0.30 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.33 0.17 0.10 0.93 1.43 1.05 0.94
C5' 0.08 0.83 0.21 0.03 0.37 0.01 0.30 0.00 0.41 0.56 0.65 0.76 0.38 0.48 0.20 0.11 0.20 0.02 0.01 0.41 0.34 0.02
C6 0.02 0.01 0.21 0.43 0.01 0.24 0.01 0.41 0.00 0.02 0.00 0.01 0.00 0.02 0.01 0.37 0.26 0.21 0.96 1.51 1.12 0.99
C8 0.02 0.02 0.21 0.41 0.01 0.34 0.01 0.56 0.02 0.00 0.02 0.01 0.03 0.00 0.01 0.50 0.28 0.27 1.05 1.51 1.23 1.10
N1 0.03 0.00 0.34 0.49 0.01 0.40 0.01 0.65 0.00 0.02 0.00 0.01 0.01 0.02 0.01 0.46 0.42 0.37 0.99 1.42 1.14 1.02
N3 0.03 0.01 0.42 0.47 0.00 0.51 0.01 0.76 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.54 0.51 0.50 0.90 1.10 0.90 0.87
N6 0.02 0.01 0.16 0.44 0.01 0.20 0.02 0.38 0.00 0.03 0.01 0.01 0.00 0.03 0.02 0.38 0.25 0.14 1.02 1.71 1.30 1.12
N7 0.01 0.01 0.11 0.41 0.01 0.27 0.00 0.48 0.02 0.00 0.02 0.01 0.03 0.00 0.01 0.46 0.25 0.15 1.09 1.71 1.34 1.19
N9 0.01 0.01 0.03 0.24 0.00 0.10 0.01 0.20 0.01 0.01 0.01 0.01 0.02 0.01 0.00 0.23 0.11 0.02 0.75 1.01 0.73 0.67
O2' 0.02 0.56 0.01 0.02 0.31 0.31 0.33 0.11 0.37 0.50 0.46 0.54 0.38 0.46 0.23 0.00 0.07 0.22 0.36 0.72 0.96 0.47
O3' 0.33 0.53 0.04 0.01 0.26 0.05 0.17 0.20 0.26 0.28 0.42 0.51 0.25 0.25 0.11 0.07 0.00 0.24 0.27 0.54 0.61 0.32
O4' 0.01 0.49 0.03 0.02 0.25 0.00 0.10 0.02 0.21 0.27 0.37 0.50 0.14 0.15 0.02 0.22 0.24 0.00 0.38 0.51 0.33 0.32
O5' 0.47 1.01 0.52 0.22 0.80 0.02 0.93 0.01 0.96 1.05 0.99 0.90 1.02 1.09 0.75 0.36 0.27 0.38 0.00 0.02 0.02 0.01
OP1 0.61 1.31 0.73 0.55 1.10 0.34 1.43 0.41 1.51 1.51 1.42 1.10 1.71 1.71 1.01 0.72 0.54 0.51 0.02 0.00 0.02 0.01
OP2 0.49 1.13 0.91 0.62 0.76 0.38 1.05 0.34 1.12 1.23 1.14 0.90 1.30 1.34 0.73 0.96 0.61 0.33 0.02 0.02 0.00 0.01
P 0.37 1.05 0.57 0.30 0.73 0.11 0.94 0.02 0.99 1.10 1.02 0.87 1.12 1.19 0.67 0.47 0.32 0.32 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.94 1.77 0.74 0.77 2.61 1.11 2.60 1.72 2.02 1.51 2.24 3.05 1.77 0.71 1.18 1.00 1.82 2.72 2.61 2.33
C2 0.92 1.92 0.47 0.43 2.75 0.99 2.41 1.37 1.82 1.51 2.51 3.26 1.82 0.53 0.96 1.06 1.15 1.66 1.39 1.40
C2' 1.07 1.92 0.97 0.91 2.64 1.10 2.68 1.85 2.14 1.63 2.34 3.04 2.01 0.91 1.27 1.02 2.13 3.19 3.15 2.77
C3' 0.76 1.67 0.85 0.94 2.42 1.07 2.39 1.78 1.81 1.31 2.13 2.88 1.84 0.95 1.50 0.77 1.95 3.09 2.99 2.63
C4 0.93 1.74 0.60 0.56 2.56 0.96 2.43 1.39 1.88 1.49 2.22 2.93 1.64 0.65 1.05 0.98 1.32 1.93 1.77 1.62
C4' 0.71 1.49 0.67 0.94 2.32 1.29 2.32 1.95 1.78 1.23 1.97 2.79 1.55 0.68 1.36 1.05 2.03 3.09 2.87 2.65
C5 0.94 1.65 0.58 0.52 2.24 0.91 2.12 1.28 1.71 1.42 2.02 2.48 1.56 0.71 1.05 1.01 1.16 1.66 1.45 1.38
C5' 0.82 1.39 0.79 1.18 2.17 1.54 2.24 2.26 1.80 1.23 1.83 2.59 1.44 0.76 1.48 1.31 2.36 3.45 3.16 3.01
C6 0.94 1.74 0.47 0.42 2.22 0.97 1.96 1.30 1.57 1.40 2.13 2.47 1.68 0.64 0.99 1.13 1.06 1.43 1.12 1.23
C8 0.96 1.65 0.80 0.80 2.16 1.08 2.18 1.68 1.81 1.43 1.94 2.37 1.72 0.82 1.21 0.95 1.72 2.45 2.25 2.09
N1 0.94 1.90 0.45 0.43 2.53 1.03 2.16 1.41 1.67 1.47 2.42 2.92 1.86 0.55 0.96 1.14 1.14 1.57 1.21 1.35
N3 0.92 1.85 0.54 0.49 2.77 0.96 2.54 1.37 1.91 1.52 2.42 3.29 1.72 0.58 1.00 1.00 1.26 1.85 1.69 1.55
N6 0.97 1.65 0.50 0.47 1.84 1.07 1.59 1.41 1.35 1.30 1.90 1.99 1.71 0.74 1.02 1.27 1.13 1.40 1.03 1.28
N7 0.97 1.54 0.74 0.68 1.93 0.95 1.92 1.42 1.63 1.37 1.77 2.07 1.55 0.86 1.16 0.94 1.37 1.93 1.70 1.62
N9 0.94 1.72 0.72 0.71 2.47 1.04 2.46 1.59 1.94 1.48 2.14 2.82 1.70 0.73 1.15 0.97 1.63 2.38 2.24 2.03
O2' 1.61 2.52 1.33 1.14 3.26 1.32 3.27 2.03 2.70 2.21 2.96 3.67 2.54 1.08 1.24 1.48 2.45 3.41 3.56 3.10
O3' 0.85 1.87 0.87 0.97 2.71 1.06 2.60 1.71 1.95 1.46 2.40 3.26 1.98 0.90 1.59 0.79 1.87 2.92 2.92 2.51
O4' 0.79 1.51 0.61 0.87 2.37 1.30 2.35 1.89 1.81 1.29 2.00 2.83 1.51 0.58 1.22 1.11 1.88 2.81 2.56 2.39
O5' 0.99 1.55 1.38 1.42 2.11 1.40 2.17 2.05 1.79 1.33 1.90 2.45 1.71 1.56 1.73 1.07 2.30 3.36 3.25 2.96
OP1 1.98 1.98 2.33 2.48 2.24 2.47 2.39 2.81 2.23 1.94 2.10 2.45 2.18 2.52 2.78 2.11 2.99 3.80 3.95 3.55
OP2 1.59 1.74 2.02 2.24 2.14 2.15 2.37 2.84 2.21 1.74 1.95 2.32 1.84 2.07 2.37 1.75 3.17 4.40 4.12 3.89
P 1.25 1.49 1.66 1.83 1.91 1.83 2.07 2.44 1.83 1.38 1.72 2.16 1.71 1.85 2.11 1.45 2.69 3.80 3.68 3.39

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.02 0.02 0.01 0.02 0.06 0.01 0.01 0.02 0.02 0.04 0.02 0.25 0.01 0.19 0.32 0.44 0.21
C2 0.02 0.00 0.19 0.25 0.01 0.10 0.01 0.18 0.01 0.01 0.00 0.02 0.01 0.15 0.12 0.14 0.20 0.69 0.42 0.29
C2' 0.00 0.19 0.00 0.01 0.06 0.02 0.15 0.16 0.19 0.03 0.14 0.07 0.35 0.00 0.03 0.01 0.39 0.44 0.53 0.40
C3' 0.02 0.25 0.01 0.00 0.36 0.01 0.39 0.02 0.35 0.22 0.31 0.39 0.27 0.02 0.01 0.03 0.16 0.25 0.20 0.13
C4 0.02 0.01 0.06 0.36 0.00 0.15 0.01 0.20 0.01 0.01 0.01 0.01 0.01 0.35 0.22 0.04 0.46 1.09 0.60 0.54
C4' 0.01 0.10 0.02 0.01 0.15 0.00 0.24 0.01 0.25 0.09 0.10 0.17 0.21 0.28 0.02 0.00 0.02 0.15 0.37 0.11
C5 0.02 0.01 0.15 0.39 0.01 0.24 0.00 0.32 0.00 0.01 0.01 0.01 0.01 0.42 0.30 0.12 0.61 1.15 0.71 0.66
C5' 0.06 0.18 0.16 0.02 0.20 0.01 0.32 0.00 0.31 0.10 0.17 0.23 0.35 0.12 0.19 0.02 0.01 0.32 0.32 0.01
C6 0.01 0.01 0.19 0.35 0.01 0.25 0.00 0.31 0.00 0.00 0.01 0.01 0.01 0.37 0.24 0.16 0.56 0.89 0.61 0.55
N1 0.01 0.01 0.03 0.22 0.01 0.09 0.01 0.10 0.00 0.00 0.01 0.02 0.02 0.19 0.09 0.02 0.29 0.62 0.44 0.31
N3 0.02 0.00 0.14 0.31 0.01 0.10 0.01 0.17 0.01 0.01 0.00 0.01 0.01 0.23 0.13 0.10 0.29 0.90 0.47 0.39
N4 0.02 0.02 0.07 0.39 0.01 0.17 0.01 0.23 0.01 0.02 0.01 0.00 0.02 0.40 0.27 0.05 0.51 1.22 0.68 0.61
O2 0.04 0.01 0.35 0.27 0.01 0.21 0.01 0.35 0.01 0.02 0.01 0.02 0.00 0.22 0.27 0.24 0.19 0.59 0.44 0.30
O2' 0.02 0.15 0.00 0.02 0.35 0.28 0.42 0.12 0.37 0.19 0.23 0.40 0.22 0.00 0.07 0.19 0.29 0.34 0.58 0.32
O3' 0.25 0.12 0.03 0.01 0.22 0.02 0.30 0.19 0.24 0.09 0.13 0.27 0.27 0.07 0.00 0.16 0.24 0.39 0.32 0.26
O4' 0.01 0.14 0.01 0.03 0.04 0.00 0.12 0.02 0.16 0.02 0.10 0.05 0.24 0.19 0.16 0.00 0.12 0.19 0.56 0.22
O5' 0.19 0.20 0.39 0.16 0.46 0.02 0.61 0.01 0.56 0.29 0.29 0.51 0.19 0.29 0.24 0.12 0.00 0.03 0.02 0.01
OP1 0.32 0.69 0.44 0.25 1.09 0.15 1.15 0.32 0.89 0.62 0.90 1.22 0.59 0.34 0.39 0.19 0.03 0.00 0.01 0.01
OP2 0.44 0.42 0.53 0.20 0.60 0.37 0.71 0.32 0.61 0.44 0.47 0.68 0.44 0.58 0.32 0.56 0.02 0.01 0.00 0.01
P 0.21 0.29 0.40 0.13 0.54 0.11 0.66 0.01 0.55 0.31 0.39 0.61 0.30 0.32 0.26 0.22 0.01 0.01 0.01 0.00