sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1166-A1169
X
>3U5D-11593-12310
X
>3CMA-01321-0442
X
>1VQP-01321-0442
X
>1VQ4-01321-0442
X
>3U5H-51389-5340
X
>1VQN-01321-0442
X
>3CCM-01321-0442
X
>2QEX-01321-0442
X
>3CC7-01321-0442
X
</seq>
<hsp>
0 1:0.615796671409
0 2:0.970666505378
0 3:0.955427535224
0 4:0.990861762757
0 5:0.973107692661
0 6:0.987250617125
0 7:0.985203312692
0 8:0.999997340827
0 9:0.98749629524
1 2:0.404029481887
1 3:0.388035748767
1 4:0.427912974893
1 5:0.403859163843
1 6:0.418540047199
1 7:0.411550994772
1 8:0.43121438448
1 9:0.419611709312
2 3:0.0993536201772
2 4:0.165967838254
2 5:0.0901347261211
2 6:0.123598146644
2 7:0.0810808993161
2 8:0.127546218148
2 9:0.111201880408
3 4:0.109398413369
3 5:0.0849920923264
3 6:0.0579260101221
3 7:0.0725842181818
3 8:0.084251197352
3 9:0.0757235206978
4 5:0.0952966978777
4 6:0.0578564873954
4 7:0.0900674531798
4 8:0.0548300281223
4 9:0.0588703893838
5 6:0.070632920428
5 7:0.034697486235
5 8:0.0675838163359
5 9:0.0496011766186
6 7:0.0573421574852
6 8:0.0415813686779
6 9:0.0394294555573
7 8:0.0545647170947
7 9:0.0378384726138
8 9:0.027119983333
</hsp>