ClaRNA

Doublet Group distance statistics: 12857

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Distances from reference structure (by RMSD)

90, 147, 24, 13, 4, 0, 0, 1, 12, 1, 4, 81, 95, 6, 5, 7, 2, 1, 0, 7,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 A 0, 0.036, 0.262, 0.489, 1.059 max_d=1.059 avg_d=0.262 std_dev=0.226
N1 B 0, 0.042, 0.279, 0.515, 1.017 max_d=1.017 avg_d=0.279 std_dev=0.237
C2 A 0, 0.015, 0.457, 0.900, 2.247 max_d=2.247 avg_d=0.457 std_dev=0.442
C6 B 0, 0.051, 0.521, 0.992, 2.122 max_d=2.122 avg_d=0.521 std_dev=0.471
C2 B 0, 0.063, 0.538, 1.012, 1.572 max_d=1.572 avg_d=0.538 std_dev=0.475
C6 A 0, 0.029, 0.537, 1.044, 2.467 max_d=2.467 avg_d=0.537 std_dev=0.507
C4 B 0, 0.042, 0.631, 1.220, 2.550 max_d=2.550 avg_d=0.631 std_dev=0.589
N3 A 0, 0.027, 0.619, 1.211, 3.290 max_d=3.290 avg_d=0.619 std_dev=0.592
N3 B 0, 0.069, 0.669, 1.268, 2.364 max_d=2.364 avg_d=0.669 std_dev=0.600
C5 B 0, 0.057, 0.667, 1.277, 2.672 max_d=2.672 avg_d=0.667 std_dev=0.610
C1' B 0, 0.040, 0.709, 1.379, 2.205 max_d=2.205 avg_d=0.709 std_dev=0.669
C1' A 0, 0.025, 0.721, 1.417, 3.155 max_d=3.155 avg_d=0.721 std_dev=0.696
C5 A 0, 0.036, 0.746, 1.456, 3.522 max_d=3.522 avg_d=0.746 std_dev=0.710
C4 A 0, 0.031, 0.746, 1.461, 3.603 max_d=3.603 avg_d=0.746 std_dev=0.715
O2 A 0, 0.010, 0.907, 1.804, 4.263 max_d=4.263 avg_d=0.907 std_dev=0.897
O2 B 0, 0.099, 1.018, 1.937, 3.094 max_d=3.094 avg_d=1.018 std_dev=0.919
N4 B 0, 0.061, 1.054, 2.048, 4.015 max_d=4.015 avg_d=1.054 std_dev=0.994
O4' B 0, 0.107, 1.209, 2.310, 3.304 max_d=3.304 avg_d=1.209 std_dev=1.101
C2' A 0, 0.083, 1.208, 2.333, 5.214 max_d=5.214 avg_d=1.208 std_dev=1.125
O4 A 0, 0.041, 1.176, 2.311, 5.539 max_d=5.539 avg_d=1.176 std_dev=1.135
O4' A 0, -0.092, 1.048, 2.189, 5.106 max_d=5.106 avg_d=1.048 std_dev=1.141
C2' B 0, -0.040, 1.197, 2.434, 3.960 max_d=3.960 avg_d=1.197 std_dev=1.237
O2' A 0, 0.513, 1.750, 2.988, 5.814 max_d=5.814 avg_d=1.750 std_dev=1.237
C3' B 0, 0.772, 2.032, 3.292, 5.452 max_d=5.452 avg_d=2.032 std_dev=1.260
O3' B 0, 1.639, 2.942, 4.245, 7.291 max_d=7.291 avg_d=2.942 std_dev=1.303
C3' A 0, 0.799, 2.162, 3.524, 7.440 max_d=7.440 avg_d=2.162 std_dev=1.362
O2' B 0, 0.365, 1.808, 3.252, 5.490 max_d=5.490 avg_d=1.808 std_dev=1.444
C4' B 0, 0.250, 1.768, 3.286, 4.720 max_d=4.720 avg_d=1.768 std_dev=1.518
C4' A 0, 0.246, 1.847, 3.448, 7.409 max_d=7.409 avg_d=1.847 std_dev=1.601
O3' A 0, 1.632, 3.236, 4.839, 9.097 max_d=9.097 avg_d=3.236 std_dev=1.603
O5' A 0, 0.690, 2.434, 4.179, 6.843 max_d=6.843 avg_d=2.434 std_dev=1.744
OP2 A 0, 2.019, 3.895, 5.770, 8.474 max_d=8.474 avg_d=3.895 std_dev=1.875
O5' B 0, 0.548, 2.425, 4.303, 6.883 max_d=6.883 avg_d=2.425 std_dev=1.877
C5' A 0, 0.140, 2.212, 4.285, 8.500 max_d=8.500 avg_d=2.212 std_dev=2.073
P A 0, 0.980, 3.105, 5.231, 7.679 max_d=7.679 avg_d=3.105 std_dev=2.126
C5' B 0, 0.034, 2.165, 4.296, 6.045 max_d=6.045 avg_d=2.165 std_dev=2.131
OP2 B 0, 1.709, 3.968, 6.228, 10.457 max_d=10.457 avg_d=3.968 std_dev=2.260
P B 0, 0.783, 3.325, 5.867, 9.047 max_d=9.047 avg_d=3.325 std_dev=2.542
OP1 A 0, 0.948, 3.775, 6.601, 9.842 max_d=9.842 avg_d=3.775 std_dev=2.827
OP1 B 0, 1.447, 4.578, 7.710, 9.355 max_d=9.355 avg_d=4.578 std_dev=3.132

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.02 0.02 0.01 0.02 0.08 0.02 0.01 0.02 0.04 0.02 0.37 0.02 0.01 0.16 0.72 0.18 0.25
C2 0.02 0.00 0.17 0.20 0.01 0.15 0.02 0.23 0.01 0.01 0.01 0.01 0.34 0.30 0.02 0.21 0.28 0.96 0.65 0.33
C2' 0.01 0.17 0.00 0.01 0.06 0.02 0.12 0.22 0.15 0.03 0.13 0.29 0.00 0.03 0.07 0.03 0.49 0.70 0.47 0.57
C3' 0.02 0.20 0.01 0.00 0.41 0.01 0.47 0.02 0.43 0.24 0.29 0.17 0.02 0.01 0.43 0.02 0.09 0.24 0.18 0.11
C4 0.02 0.01 0.06 0.41 0.00 0.17 0.01 0.24 0.01 0.01 0.01 0.02 0.41 0.14 0.01 0.04 0.42 1.24 1.04 0.46
C4' 0.01 0.15 0.02 0.01 0.17 0.00 0.30 0.01 0.31 0.10 0.12 0.31 0.34 0.02 0.18 0.01 0.02 0.16 0.22 0.05
C5 0.02 0.02 0.12 0.47 0.01 0.30 0.00 0.40 0.01 0.01 0.01 0.02 0.47 0.26 0.01 0.18 0.56 1.37 1.06 0.62
C5' 0.08 0.23 0.22 0.02 0.24 0.01 0.40 0.00 0.39 0.11 0.19 0.46 0.12 0.24 0.27 0.02 0.01 0.15 0.41 0.02
C6 0.02 0.01 0.15 0.43 0.01 0.31 0.01 0.39 0.00 0.01 0.01 0.02 0.43 0.21 0.02 0.23 0.49 1.24 0.75 0.53
N1 0.01 0.01 0.03 0.24 0.01 0.10 0.01 0.11 0.01 0.00 0.01 0.02 0.23 0.15 0.02 0.01 0.19 0.96 0.47 0.26
N3 0.02 0.01 0.13 0.29 0.01 0.12 0.01 0.19 0.01 0.01 0.00 0.01 0.37 0.19 0.02 0.13 0.31 1.08 0.87 0.35
O2 0.04 0.01 0.29 0.17 0.02 0.31 0.02 0.46 0.02 0.02 0.01 0.00 0.48 0.54 0.03 0.38 0.48 0.92 0.70 0.53
O2' 0.02 0.34 0.00 0.02 0.41 0.34 0.47 0.12 0.43 0.23 0.37 0.48 0.00 0.06 0.44 0.23 0.37 0.54 0.52 0.47
O3' 0.37 0.30 0.03 0.01 0.14 0.02 0.26 0.24 0.21 0.15 0.19 0.54 0.06 0.00 0.17 0.24 0.24 0.59 0.30 0.33
O4 0.02 0.02 0.07 0.43 0.01 0.18 0.01 0.27 0.02 0.02 0.02 0.03 0.44 0.17 0.00 0.05 0.47 1.30 1.19 0.53
O4' 0.01 0.21 0.03 0.02 0.04 0.01 0.18 0.02 0.23 0.01 0.13 0.38 0.23 0.24 0.05 0.00 0.09 0.58 0.14 0.16
O5' 0.16 0.28 0.49 0.09 0.42 0.02 0.56 0.01 0.49 0.19 0.31 0.48 0.37 0.24 0.47 0.09 0.00 0.02 0.02 0.01
OP1 0.72 0.96 0.70 0.24 1.24 0.16 1.37 0.15 1.24 0.96 1.08 0.92 0.54 0.59 1.30 0.58 0.02 0.00 0.01 0.01
OP2 0.18 0.65 0.47 0.18 1.04 0.22 1.06 0.41 0.75 0.47 0.87 0.70 0.52 0.30 1.19 0.14 0.02 0.01 0.00 0.01
P 0.25 0.33 0.57 0.11 0.46 0.05 0.62 0.02 0.53 0.26 0.35 0.53 0.47 0.33 0.53 0.16 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.86 0.58 1.23 1.68 0.35 1.50 0.58 1.76 0.65 0.60 0.40 0.73 0.92 1.21 1.80 1.20 2.05 2.41 2.13 2.28
C2 0.42 0.44 0.42 0.78 0.26 0.70 0.46 0.95 0.41 0.36 0.37 0.40 0.65 0.76 0.69 0.75 1.17 1.58 1.61 1.46
C2' 1.32 0.88 1.65 2.18 0.58 2.08 0.78 2.35 0.98 0.97 0.64 1.00 1.26 1.49 2.28 1.69 2.64 3.06 2.61 2.86
C3' 1.49 1.16 1.92 2.29 0.83 2.20 0.85 2.51 1.00 1.12 0.96 1.22 1.63 1.91 2.51 1.75 2.81 3.24 2.59 3.03
C4 0.62 0.40 0.76 1.02 0.30 0.88 0.33 1.15 0.46 0.42 0.43 0.54 0.59 1.18 1.02 0.73 0.80 1.17 1.40 1.03
C4' 1.33 0.89 1.87 2.31 0.53 2.07 0.65 2.31 0.82 0.91 0.65 0.97 1.35 1.95 2.68 1.56 2.56 2.89 2.30 2.73
C5 0.62 0.58 1.02 1.09 0.29 0.74 0.39 1.01 0.52 0.47 0.58 0.41 0.79 1.41 1.15 0.50 0.85 1.19 1.50 1.14
C5' 1.66 1.10 2.30 2.73 0.56 2.35 0.76 2.41 1.02 1.17 0.77 0.86 1.55 2.48 3.29 1.73 2.53 2.64 2.05 2.50
C6 0.66 0.60 1.19 1.34 0.25 0.87 0.46 1.00 0.52 0.52 0.51 0.35 0.84 1.40 1.44 0.57 1.12 1.33 1.44 1.31
N1 0.54 0.49 0.90 1.21 0.22 0.94 0.46 1.16 0.47 0.42 0.39 0.41 0.74 1.05 1.24 0.77 1.42 1.73 1.65 1.64
N3 0.45 0.42 0.42 0.73 0.27 0.62 0.42 0.86 0.39 0.35 0.32 0.44 0.62 0.89 0.66 0.64 0.72 1.16 1.34 1.01
O2 0.72 0.57 0.52 0.89 0.39 1.00 0.59 1.18 0.60 0.57 0.48 0.65 0.82 0.76 0.83 1.07 1.43 1.92 1.93 1.77
O2' 1.41 0.79 1.59 2.26 0.80 2.31 1.24 2.68 1.33 1.10 0.54 1.12 1.06 1.26 2.26 1.93 2.93 3.48 3.25 3.30
O3' 1.54 1.07 1.92 2.31 0.79 2.38 0.86 2.82 0.96 1.06 0.82 1.32 1.62 1.84 2.44 1.91 3.09 3.69 2.97 3.51
O4 1.12 0.53 1.25 1.61 0.41 1.51 0.46 1.71 0.71 0.75 0.46 0.84 0.79 1.53 1.69 1.26 1.21 1.49 1.58 1.29
O4' 1.00 0.66 1.51 1.91 0.35 1.61 0.52 1.81 0.64 0.68 0.46 0.75 1.04 1.61 2.21 1.21 2.08 2.34 1.97 2.25
O5' 1.92 1.37 2.59 2.99 0.73 2.49 0.92 2.35 1.25 1.44 1.05 0.78 1.79 2.80 3.55 1.87 2.35 2.19 1.68 2.07
OP1 2.80 2.22 3.56 3.67 1.33 3.03 1.46 2.51 1.86 2.25 1.75 1.08 2.68 3.89 4.36 2.51 2.32 1.83 1.56 1.83
OP2 1.89 1.56 2.60 2.74 1.16 2.20 1.12 1.81 1.25 1.45 1.45 1.30 1.97 3.15 3.62 1.59 1.46 1.23 1.10 1.03
P 2.35 1.68 3.07 3.38 0.90 2.81 1.09 2.39 1.49 1.77 1.28 0.79 2.10 3.43 4.22 2.18 2.13 1.73 1.31 1.63

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.08 0.02 0.01 0.02 0.02 0.05 0.02 0.36 0.01 0.25 0.61 0.22 0.26
C2 0.03 0.00 0.23 0.25 0.01 0.16 0.01 0.31 0.01 0.01 0.01 0.02 0.01 0.28 0.23 0.22 0.57 0.92 0.80 0.67
C2' 0.01 0.23 0.00 0.00 0.06 0.01 0.17 0.22 0.23 0.03 0.18 0.08 0.41 0.00 0.04 0.03 0.58 0.83 0.61 0.65
C3' 0.02 0.25 0.00 0.00 0.38 0.01 0.46 0.02 0.44 0.23 0.30 0.41 0.32 0.03 0.01 0.02 0.31 0.54 0.21 0.31
C4 0.02 0.01 0.06 0.38 0.00 0.16 0.01 0.24 0.01 0.01 0.01 0.01 0.02 0.43 0.14 0.05 0.59 1.17 0.79 0.68
C4' 0.01 0.16 0.01 0.01 0.16 0.00 0.33 0.01 0.35 0.10 0.11 0.17 0.38 0.33 0.03 0.01 0.02 0.24 0.25 0.07
C5 0.02 0.01 0.17 0.46 0.01 0.33 0.00 0.53 0.00 0.01 0.01 0.01 0.02 0.48 0.24 0.19 0.87 1.45 1.08 1.01
C5' 0.08 0.31 0.22 0.02 0.24 0.01 0.53 0.00 0.54 0.13 0.21 0.27 0.69 0.11 0.24 0.02 0.01 0.18 0.39 0.02
C6 0.02 0.01 0.23 0.44 0.01 0.35 0.00 0.54 0.00 0.00 0.01 0.01 0.02 0.43 0.22 0.25 0.84 1.30 0.89 0.91
N1 0.01 0.01 0.03 0.23 0.01 0.10 0.01 0.13 0.00 0.00 0.01 0.02 0.02 0.24 0.16 0.02 0.39 0.84 0.36 0.40
N3 0.02 0.01 0.18 0.30 0.01 0.11 0.01 0.21 0.01 0.01 0.00 0.01 0.01 0.36 0.15 0.15 0.54 1.01 0.82 0.64
N4 0.02 0.02 0.08 0.41 0.01 0.17 0.01 0.27 0.01 0.02 0.01 0.00 0.02 0.48 0.17 0.06 0.63 1.26 0.93 0.76
O2 0.05 0.01 0.41 0.32 0.02 0.38 0.02 0.69 0.02 0.02 0.01 0.02 0.00 0.38 0.42 0.39 1.01 1.21 1.39 1.19
O2' 0.02 0.28 0.00 0.03 0.43 0.33 0.48 0.11 0.43 0.24 0.36 0.48 0.38 0.00 0.06 0.22 0.39 0.71 0.68 0.54
O3' 0.36 0.23 0.04 0.01 0.14 0.03 0.24 0.24 0.22 0.16 0.15 0.17 0.42 0.06 0.00 0.24 0.27 0.54 0.26 0.30
O4' 0.01 0.22 0.03 0.02 0.05 0.01 0.19 0.02 0.25 0.02 0.15 0.06 0.39 0.22 0.24 0.00 0.12 0.42 0.29 0.17
O5' 0.25 0.57 0.58 0.31 0.59 0.02 0.87 0.01 0.84 0.39 0.54 0.63 1.01 0.39 0.27 0.12 0.00 0.02 0.02 0.01
OP1 0.61 0.92 0.83 0.54 1.17 0.24 1.45 0.18 1.30 0.84 1.01 1.26 1.21 0.71 0.54 0.42 0.02 0.00 0.01 0.01
OP2 0.22 0.80 0.61 0.21 0.79 0.25 1.08 0.39 0.89 0.36 0.82 0.93 1.39 0.68 0.26 0.29 0.02 0.01 0.00 0.01
P 0.26 0.67 0.65 0.31 0.68 0.07 1.01 0.02 0.91 0.40 0.64 0.76 1.19 0.54 0.30 0.17 0.01 0.01 0.01 0.00