sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FFY-T36-T33
X
>1QU2-T36-T33
X
>2UUB-A171-A213
X
>1XMQ-A171-A213
X
>2UXC-A171-A213
X
>2UUA-A171-A213
X
>1N32-A171-A213
X
>2VQE-A171-A213
X
>2VQF-A171-A213
X
</seq>
<hsp>
0 1:2.44069613218e-06
0 2:0.773949926117
0 3:0.889981182484
0 4:0.940408065009
0 5:0.937464203736
0 6:1.0
0 7:0.885710566118
0 8:0.828441566058
1 2:0.773949926117
1 3:0.889981182484
1 4:0.940408065009
1 5:0.937464203736
1 6:1.0
1 7:0.885710566118
1 8:0.828441566058
2 3:0.211088711907
2 4:0.264295879392
2 5:0.380935998634
2 6:0.375856566743
2 7:0.426843580842
2 8:0.367583977247
3 4:0.176779192695
3 5:0.248878424105
3 6:0.239288962301
3 7:0.349234477356
3 8:0.310228638217
4 5:0.204629923101
4 6:0.144621832559
4 7:0.299791793401
4 8:0.272643117805
5 6:0.215215740984
5 7:0.270966965665
5 8:0.253769352369
6 7:0.245376293598
6 8:0.245195211335
7 8:0.0853214084131
</hsp>