sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1L9A-B56-B57
X
>3L3C-G2-G3
X
>3IQN-A45-A46
X
>3U5B-21286-21305
X
>1XMQ-A1056-A1075
X
>2UXC-A1061-A1080
X
</seq>
<hsp>
0 1:0.378223683128
0 2:0.479673140473
0 3:0.999999472709
0 4:0.895356783975
0 5:0.898479869093
1 2:0.457751304033
1 3:0.965833701853
1 4:0.858760285899
1 5:0.861584186224
2 3:0.681839511029
2 4:0.601107788641
2 5:0.589099252396
3 4:0.156524413045
3 5:0.135592891629
4 5:0.0535761974517
</hsp>