sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11927-11922
X
>3U5H-51931-51926
X
>3R8O-A364-A392
X
>3U5B-2437-2464
X
>3R8N-A364-A392
X
>3U5F-6434-6461
X
</seq>
<hsp>
0 1:0.109357427728
0 2:0.915621770972
0 3:1.0
0 4:0.931839920036
0 5:0.898733673904
1 2:0.872727416277
1 3:0.953911767246
1 4:0.892860882603
1 5:0.865792249389
2 3:0.252426980658
2 4:0.329106987158
2 5:0.244510830592
3 4:0.173430997094
3 5:0.180655047457
4 5:0.136094655109
</hsp>