ClaRNA

Doublet Group info: classifier/stacking/<</GA

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: stacking
Desc: <</GA
Sub-clusters:
count: 34     show
<</GA/sub-001
<</GA/sub-002
<</GA/sub-003
<</GA/sub-004
<</GA/sub-005
<</GA/sub-006
<</GA/sub-007
<</GA/sub-008
<</GA/sub-009
<</GA/sub-010
<</GA/sub-011
<</GA/sub-012
<</GA/sub-013
<</GA/sub-014
<</GA/sub-015
<</GA/sub-016
<</GA/sub-017
<</GA/sub-018
<</GA/sub-019
<</GA/sub-020
<</GA/sub-021
<</GA/sub-022
<</GA/sub-023
<</GA/sub-024
<</GA/sub-025
<</GA/sub-026
<</GA/sub-027
<</GA/sub-028
<</GA/sub-029
<</GA/sub-030
<</GA/sub-031
<</GA/sub-032
<</GA/sub-033
<</GA/sub-034
Members:
count: 12392
download members
1YI2:01813:01833
1VQ4:01813:01833
2EEU:A47:A20
3FO4:A45:A18
2EET:A47:A20
2VQE:A33:A387
1XMQ:A33:A387
1Q82:A363:A399
1S72:01484:01485
3CCV:01484:01485
3KNK:A9:A8
2J00:A807:A806
3OGY:A562:A561
3OHJ:A736:A735
3R8N:A945:A944
3CME:02748:02747
3R8T:A2524:A2523
3CD6:0147:0146
3KNI:B99:B98
1YJN:0484:0483
1QVG:02279:02278
2V3C:N24:N23
3KNK:A302:A301
1JJ2:02537:02536
1S72:0484:0483
3CCS:0106:0117
1YIJ:02581:02580
1VQ7:0580:0579
3OHZ:A195:A194
2ZJR:Y90:Y89
2QEX:0106:0117
3F1F:A2516:A2515
2UXC:A611:A610
3KNI:A1618:A1617
3CC4:0320:0319
3U5H:5943:5942
3OHZ:A2058:A2057
3OH7:B100:B99
2QEX:01671:01670
3CXC:0484:0483
3CCQ:01154:01153
3R8S:A282:A281
3CCU:0500:0497
1H3E:B14:B13
1VQP:02537:02536
1GID:A38:A37
1Q81:A1566:A1565
1YJN:01278:01277
2ZJR:X1130:X1129
1KD1:A2204:A2203
3F1F:A1493:A1492
1YIJ:0106:0117
3OHJ:B100:B99
1YJW:0697:0696
3R8T:A1626:A1625
3CD6:02597:02596
3CCR:02581:02580
3CCU:01332:01331
3G71:0697:0696
1KD1:A697:A696
2XD0:I29:I28
1K9M:A2113:A2112
1XMQ:A316:A315
3F1F:A2707:A2706
1YJN:0725:0724
1S72:0444:0443
3F1H:A1753:A1752
2OUE:B6:B5
2J00:A347:A346
1VQL:02581:02580
1YJW:0580:0579
3CD6:02583:02582
3BBM:B6:B5
1VQ6:0444:0443
3CXC:01332:01331
1M90:A1944:A1943
3OI1:A464:A463
1YJ9:01482:01481
2J02:A518:A517
3G8T:S132:S131
1NJI:A1944:A1943
2ZJR:X968:X967
3CCS:01332:01331
1KD1:A491:A490
2J02:A588:A587
1ZSE:R11:R10
3CC2:081:080
3CCQ:0436:0435
3CC2:01944:01943
3OH5:A2192:A2191
1YJ9:02597:02596
3CCS:0436:0435
2OTL:01482:01481
2VQE:A1019:A1018
3CCU:0436:0435
1YJ9:01052:01051
1VQP:081:080
3OV7:D4:D3
3CR1:B6:B5
1L8V:B111:B110
1YJW:0436:0435
3CCM:02204:02203
3EPH:F62:F61
3F1H:A2254:A2253
1K9M:A1308:A1307
3CCE:02411:02410
3CC4:02082:02081
3CCV:01854:01853
1YJN:01104:01103
1K8A:A178:A177
3CCM:01854:01853
1YHQ:02059:02058
3CCU:01482:01481
3I56:01854:01853
3CCE:02748:02747
1NJI:A1104:A1103
1Q81:A2446:A2445
1Q86:A2150:A2149
3R8T:A2234:A2233
1VQ5:0436:0435
3BNL:B17:B16
3GES:A31:A30
1VQ5:01154:01153
435D:A2:A1
1QA6:D23:D22
1JJ2:0436:0435
1JJ2:01854:01853
1YJW:02408:02407
3CC2:0725:0724
3G71:01854:01853
1Q81:A491:A490
1J6S:A3:A2
3KNI:A1390:A1389
1VQ4:02408:02407
1Y39:D17:D16
1M90:A51:A50
3KNK:A2133:A2132
2QEK:B18:B17
1FFK:02055:02054
1YIJ:028:027
1M90:A2408:A2407
3CCJ:01182:01181
1JJ2:02082:02081
3OHJ:B102:B101
3OH7:A942:A941
2J00:W64:W63
3R8O:A767:A766
4TNA:A23:A22
3OHD:A1252:A1251
3KNI:A511:A510
3R8O:A348:A347
3OLA:O10:O9
1VQ9:01154:01153
3CMA:02150:02149
3OI0:A6:A5
2OTL:028:027
3CQS:B9:B8
1VQK:02731:02730
1NUV:H7:H6
2VQF:A1252:A1251
3NPN:A18:A17
1VQL:02579:02578
2UXC:A351:A350
2PXT:B40:B39
2ZJR:X283:X282
3SUH:X5:X4
1I9V:A44:A43
1K9M:A2102:A2101
1Q81:A980:A979
3CCV:02731:02730
1VQM:02102:02101
3U5F:6382:6381
1Q81:A7:A6
3GOT:A31:A30
1QF6:B23:B22
1VQK:01104:01103
3OH5:A511:A510
1JJ2:0817:0816
3U5D:1443:1442
3MUR:R72:R71
3CC4:01114:01113
3OH7:A2100:A2099
1KD1:A980:A979
2ZJR:X2626:X2625
1VQ9:0747:0881
3F1H:A2678:A2677
3F1H:A201:A200
1VQ9:0628:0627
1ZFX:B9:B8
1XMQ:A691:A690
3FTE:D7:D6
1XMQ:A351:A350
2P7F:C6:C5
2J01:A72:A71
3OWZ:A9:A8
3OHC:A691:A690
2GCV:B21:B20
1VQP:01104:01103
3FTM:B3:B2
3DJ0:A89:A88
1VQ6:01281:01280
1Q81:A308:A307
1VQN:051:050
3G71:01182:01181
3CCM:0980:0979
1VQ4:0747:0881
3CC4:01281:01280
1YI2:01114:01113
1VQ4:0939:0938
1YHQ:02082:02081
1VQ8:01384:01383
3CPW:01760:01759
3OI1:A85:A84
1YI2:0108:0107
1Z7F:C3:C2
2OTL:0939:0938
3F1F:A1432:A1431
3IQR:A10:A9
1VQL:02121:02120
2J03:A2313:A2312
1K8A:A1281:A1280
3OHK:A2100:A2099
3I56:01251:01250
3TRA:A71:A70
2J03:A38:A37
1VQ5:01760:01759
1S72:01714:01713
1K8A:A1859:A1858
1YIJ:0108:0107
3DJ0:A91:A90
2OTJ:02330:02329
1FJG:A131:A130
3OH5:A1098:A1097
1FG0:A303:A302
3OH7:A1098:A1097
1YHQ:02121:02120
1VQM:0308:0307
1JBT:C26:C25
3F1F:A1498:A1497
2J03:A2206:A2205
2QEX:07:06
1VQO:0628:0627
3OHK:A72:A71
1VQ6:0404:0403
3OI1:A1286:A1285
3I56:973:972
3OHZ:A360:A359
1K8A:A2321:A2320
364D:C26:C25
1K8A:A1883:A1882
3OHC:A642:A641
1Q81:A1859:A1858
1FJG:A627:A626
3F2T:X99:X98
1YI2:0308:0307
2OUE:C4:C3
1VQN:02056:02054
1YIT:0531:0530
2QEX:01402:01401
3KFU:L42:L41
3OI1:A1362:A1361
1WVD:A18:A17
1VQO:0404:0403
2QUX:R9:R8
1QVG:02321:02320
1N8R:A628:A627
3I56:01281:01280
3CCR:01335:01334
3CCU:02321:02320
1Q81:A531:A530
2JLT:B11:B10
3U5H:5455:5454
3F1E:A518:A517
1FFK:01435:01434
3CME:0531:0530
3U5F:6947:6946
3KFU:N49:N48
1VQ4:02332:02331
1VTQ:A71:A70
3B5S:B17:B16
3CCV:01384:01383
2VQF:A663:A662
3KNK:A1737:A1736
3CD6:0779:0778
1A9N:Q21:Q20
3CXC:0513:0512
1EHZ:A29:A28
3P59:B6:B5
3U5F:61079:61078
2QA4:02013:02012
1Y73:A22:A21
3P59:C5:C4
1Q81:A2158:A2157
1VQ8:02739:02738
3CMA:01440:01439
2D2K:C4:C3
3CCV:02332:02331
3I56:02014:02013
3G9C:Q31:Q30
3CC2:02518:02517
3OH7:A1607:A1606
3CCJ:02028:02027
1Q81:A1526:A1525
1VQ9:02332:02331
3EGZ:B29:B28
1Y6T:B22:B21
1VC6:B16:B15
3G9C:S132:S131
1QBP:B5:B4
3HHN:E96:E95
3CCL:02014:02013
3F1H:A196:A195
3OGY:A959:A958
1FFK:0944:0943
1YJN:02224:02223
3CC7:02028:02027
3OXM:B85:B84
3R8S:A1659:A1658
1YIT:0562:0561
3OHJ:A1228:A1227
2OTJ:02014:02013
2UUA:A399:A398
1VQM:02014:02013
1YZD:C10:C9
3OUY:D4:D3
2NZ4:Q23:Q22
3G6E:02224:02223
1VQP:02028:02027
1YI2:0513:0512
1S72:02224:02223
3CCL:0172:0171
3R8S:A1566:A1565
3CCL:01456:01455
3OH7:A2200:A2199
3B4B:B119:B118
3OWW:B84:B83
3E5E:A10:A9
3G71:01402:01401
3U5H:52211:52210
1CSL:A10:A9
3P22:C37:C36
3U5H:51056:51055
1VQ9:01710:01704
3R8T:A1667:A1661
3U5H:51828:51829
1HR2:B147:B145
1UTF:21:20
1VQM:02423:02442
3F1F:A1741:A1739
3R8S:A405:A403
3CCS:01576:01574
3OI0:A1476:A1474
3G6E:01576:01574
3KNI:A1099:A1097
1YJN:01093:01092
2J03:A1154:A1152
1Q82:A1058:A1057
1YJN:01058:01057
3F1F:A1021:A1020
1VQN:01585:01584
3I56:01585:01584
1YIT:01585:01584
2J01:A1583:A1582
1N8R:A1004:A901
3BOY:D4:D3
3BOY:D11:D10
2ZJR:X541:X540
2UUA:A110:A108
3OH5:A445:A444
3CCQ:02589:02585
1Q82:A1585:A1584
3OHJ:A2353:A2596
3CCL:02589:02585
3OHJ:A2129:A2128
3F1H:A2624:A2623
2J03:A708:A707
3CPW:02399:02639
3CCR:01738:01737
3B4C:B72:B71
1JJ2:02589:02585
1KD1:A40:A39
2J01:A2230:A2229
2J03:A372:A371
3OH7:A793:A791
1VQ9:01618:01617
3CCU:040:039
2J01:A1310:A1309
2ANN:B18:B17
3CD6:0372:0371
3CCJ:01254:01253
2OTJ:01374:01373
3OHZ:A870:A869
1NJI:A1738:A1737
1VQN:01890:01889
1GTS:B20:B19
3CC4:01374:01373
1VQ5:0815:0814
3CC2:02179:02178
1K9M:A1162:A1161
3R8O:A519:A518
1NJI:A189:A187
3FOZ:C14:C13
1YIT:02179:02178
3F1H:A1393:A1392
3B4A:B72:B71
3OHZ:A1807:A1806
3CC4:01162:01161
3CCE:01033:01032
3OH7:A9:A8
1M90:A1488:A1487
3OHK:A207:A206
1Q82:A2179:A2178
3CCQ:02179:02178
3U5H:52253:52252
3CCJ:02198:02197
1YJN:01488:01487
1KD1:A943:A942
1NJI:A943:A942
3U5F:6919:6918
3OI1:A9:A8
1YHQ:02198:02197
3F1F:A513:A512
1VQ7:0943:0942
3OHK:A1258:A1257
1FFK:02023:02022
2OTJ:02198:02197
3OH7:A1323:A1322
3CXC:01890:01889
2J02:A1433:A1432
1FJG:A1337:A1336
3F1F:A198:A197
1YI2:0487:0486
2YIE:X14:X13
3R8T:A374:A373
2OIU:Q39:Q38
3CCJ:0785:0784
1M90:A785:A784
1HR2:B39:B38
1KD1:A785:A784
2ZJR:X1464:X1463
3I56:0487:0486
3U5D:1753:1752
3R8S:A2334:A2333
1Q86:A320:A319
3CCV:01033:01032
1VQ4:0785:0784
3CC2:02279:02278
3CCU:0785:0784
1YIJ:0147:0146
3U5H:52893:52892
2J00:V45:V44
3CCJ:0320:0319
1M90:A2279:A2278
1FJG:A10:A1373
2R8S:R117:R116
1M90:A320:A319
1VQ5:02279:02278
1S72:0320:0319
1N32:A627:A626
1XP7:B18:B17
3U5D:11157:11156
2QEX:0747:0881
2B8S:B18:B17
1VQ9:02321:02320
1YI2:01121:01120
1YZD:B10:B9
3CME:0404:0403
3OH5:A2650:A2649
1I6U:D11:D10
3CCM:0108:0107
1YJW:01251:01250
1YHQ:0404:0403
1VQO:01763:01762
3SUH:X34:X33
3CC7:952:951
1Q82:A2332:A2331
1VQP:01859:01858
3U5H:51779:51778
3OHJ:A360:A359
3CXC:01137:01136
1VQN:01182:01181
3KNH:Y21:Y20
3DW4:A24:A23
3SKL:B55:B54
1VQ6:0779:0778
1S72:01701:01700
1VQ7:02332:02331
3CCV:0277:0276
1S72:02518:02517
1K8A:A1701:A1700
1X9C:C4:C3
3KNH:A950:A949
1Q86:A1883:A1882
3OHJ:A1751:A1750
3CCS:0779:0778
1VQK:02518:02517
3G71:973:972
1NJI:A1126:A1125
1YJN:0945:0944
3CCE:01781:01780
Closest classifer groups: show all      show selected
Group Members RMSD
stacking/>> 18546 0.154
stacking/<< 18546 0.199
base-phosphate/H_0BPh 256 0.826
base-ribose/H_0BR 590 0.871
bp/HH_cis 1 1.694
base-phosphate/H_9BPh 715 1.706
stacking/<> 155 1.747
base-phosphate/H_8BPh 1074 1.802
base-ribose/W_6BR 160 2.496
bp/HH_tran 119 2.610

Extra

PDB:download
Reference image (generated by PyMOL):
pymol image
show in jmol
All members (generated by PyMOL):
pymol image
show in jmol