ClaRNA

Doublet Group distance statistics: 14706

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Distances from reference structure (by RMSD)

15, 3, 1, 1, 2, 7, 2, 1, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, -0.001, 0.147, 0.294, 0.487 max_d=0.487 avg_d=0.147 std_dev=0.147
C4 A 0, -0.024, 0.127, 0.277, 0.511 max_d=0.511 avg_d=0.127 std_dev=0.150
N3 A 0, -0.013, 0.167, 0.347, 0.786 max_d=0.786 avg_d=0.167 std_dev=0.180
N3 B 0, 0.047, 0.265, 0.482, 0.870 max_d=0.870 avg_d=0.265 std_dev=0.217
C5 A 0, 0.001, 0.261, 0.521, 0.973 max_d=0.973 avg_d=0.261 std_dev=0.260
C2 A 0, -0.042, 0.229, 0.500, 1.211 max_d=1.211 avg_d=0.229 std_dev=0.271
N1 A 0, 0.024, 0.313, 0.602, 1.097 max_d=1.097 avg_d=0.313 std_dev=0.289
C2 B 0, 0.051, 0.341, 0.630, 0.812 max_d=0.812 avg_d=0.341 std_dev=0.290
C6 B 0, 0.033, 0.346, 0.659, 0.901 max_d=0.901 avg_d=0.346 std_dev=0.313
C6 A 0, 0.029, 0.344, 0.658, 1.009 max_d=1.009 avg_d=0.344 std_dev=0.315
C4 B 0, -0.027, 0.297, 0.620, 1.386 max_d=1.386 avg_d=0.297 std_dev=0.324
C1' B 0, -0.009, 0.314, 0.638, 1.216 max_d=1.216 avg_d=0.314 std_dev=0.324
N9 A 0, -0.092, 0.250, 0.592, 1.213 max_d=1.213 avg_d=0.250 std_dev=0.342
C1' A 0, -0.060, 0.395, 0.850, 1.487 max_d=1.487 avg_d=0.395 std_dev=0.455
N7 A 0, -0.068, 0.397, 0.862, 1.857 max_d=1.857 avg_d=0.397 std_dev=0.465
C5 B 0, 0.025, 0.492, 0.958, 1.268 max_d=1.268 avg_d=0.492 std_dev=0.466
O6 A 0, 0.025, 0.509, 0.994, 1.548 max_d=1.548 avg_d=0.509 std_dev=0.484
C2' B 0, -0.015, 0.475, 0.965, 2.223 max_d=2.223 avg_d=0.475 std_dev=0.490
N2 A 0, -0.122, 0.374, 0.870, 2.163 max_d=2.163 avg_d=0.374 std_dev=0.496
C8 A 0, -0.148, 0.349, 0.846, 1.917 max_d=1.917 avg_d=0.349 std_dev=0.497
N4 B 0, -0.043, 0.465, 0.973, 2.142 max_d=2.142 avg_d=0.465 std_dev=0.508
O2 B 0, 0.058, 0.667, 1.276, 1.679 max_d=1.679 avg_d=0.667 std_dev=0.609
C3' B 0, -0.103, 0.523, 1.150, 2.549 max_d=2.549 avg_d=0.523 std_dev=0.626
C4' B 0, -0.225, 0.520, 1.265, 3.188 max_d=3.188 avg_d=0.520 std_dev=0.745
O4' B 0, -0.315, 0.431, 1.177, 3.230 max_d=3.230 avg_d=0.431 std_dev=0.746
O3' B 0, -0.126, 0.707, 1.541, 3.545 max_d=3.545 avg_d=0.707 std_dev=0.833
O2' B 0, -0.099, 0.735, 1.568, 3.408 max_d=3.408 avg_d=0.735 std_dev=0.834
O4' A 0, 0.036, 0.982, 1.927, 2.561 max_d=2.561 avg_d=0.982 std_dev=0.945
C2' A 0, -0.031, 1.033, 2.097, 2.740 max_d=2.740 avg_d=1.033 std_dev=1.064
C4' A 0, 0.062, 1.273, 2.484, 3.250 max_d=3.250 avg_d=1.273 std_dev=1.211
C3' A 0, 0.036, 1.343, 2.649, 3.630 max_d=3.630 avg_d=1.343 std_dev=1.306
C5' B 0, -0.617, 0.812, 2.242, 6.135 max_d=6.135 avg_d=0.812 std_dev=1.430
O3' A 0, -0.158, 1.450, 3.057, 5.161 max_d=5.161 avg_d=1.450 std_dev=1.608
O2' A 0, -0.150, 1.593, 3.335, 4.505 max_d=4.505 avg_d=1.593 std_dev=1.743
O5' B 0, -0.539, 1.280, 3.099, 7.472 max_d=7.472 avg_d=1.280 std_dev=1.819
C5' A 0, 0.145, 2.121, 4.096, 5.255 max_d=5.255 avg_d=2.121 std_dev=1.975
O5' A 0, 0.132, 2.415, 4.699, 6.754 max_d=6.754 avg_d=2.415 std_dev=2.283
OP1 A 0, 0.027, 2.367, 4.707, 10.582 max_d=10.582 avg_d=2.367 std_dev=2.340
P B 0, -0.644, 2.038, 4.719, 10.135 max_d=10.135 avg_d=2.038 std_dev=2.682
P A 0, -0.239, 2.453, 5.145, 9.644 max_d=9.644 avg_d=2.453 std_dev=2.692
OP1 B 0, -0.844, 2.094, 5.032, 11.590 max_d=11.590 avg_d=2.094 std_dev=2.938
OP2 B 0, -0.515, 2.657, 5.829, 10.222 max_d=10.222 avg_d=2.657 std_dev=3.172
OP2 A 0, -0.282, 3.255, 6.792, 10.509 max_d=10.509 avg_d=3.255 std_dev=3.537

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.07 0.00 0.02 0.03 0.01 0.02 0.11 0.03 0.02 0.05 0.08 0.07 0.01 0.01 0.02 0.29 0.01 0.25 0.03 0.78 0.53 0.40
C2 0.07 0.00 0.61 0.64 0.01 0.26 0.01 0.43 0.01 0.02 0.00 0.01 0.01 0.01 0.02 0.40 0.41 0.38 0.33 0.01 1.04 0.86 0.58
C2' 0.00 0.61 0.00 0.01 0.29 0.02 0.10 0.25 0.21 0.36 0.44 0.75 0.61 0.22 0.03 0.01 0.02 0.01 0.50 0.13 1.16 0.66 0.70
C3' 0.02 0.64 0.01 0.00 0.40 0.01 0.37 0.03 0.46 0.29 0.58 0.74 0.59 0.30 0.20 0.02 0.01 0.02 0.31 0.44 0.53 0.32 0.25
C4 0.03 0.01 0.29 0.40 0.00 0.11 0.00 0.20 0.01 0.01 0.01 0.02 0.00 0.01 0.01 0.14 0.14 0.19 0.29 0.01 1.07 0.90 0.60
C4' 0.01 0.26 0.02 0.01 0.11 0.00 0.08 0.01 0.11 0.21 0.19 0.33 0.25 0.17 0.06 0.32 0.02 0.00 0.02 0.10 0.37 0.26 0.07
C5 0.02 0.01 0.10 0.37 0.00 0.08 0.00 0.18 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.25 0.18 0.08 0.40 0.02 1.31 1.13 0.78
C5' 0.11 0.43 0.25 0.03 0.20 0.01 0.18 0.00 0.20 0.39 0.32 0.57 0.39 0.34 0.18 0.10 0.22 0.01 0.01 0.20 0.32 0.33 0.02
C6 0.03 0.01 0.21 0.46 0.01 0.11 0.01 0.20 0.00 0.02 0.00 0.01 0.01 0.02 0.02 0.20 0.25 0.16 0.34 0.01 1.30 1.14 0.74
C8 0.02 0.02 0.36 0.29 0.01 0.21 0.01 0.39 0.02 0.00 0.02 0.02 0.01 0.00 0.00 0.52 0.31 0.22 0.66 0.04 1.47 1.18 0.96
N1 0.05 0.00 0.44 0.58 0.01 0.19 0.01 0.32 0.00 0.02 0.00 0.01 0.01 0.01 0.02 0.23 0.34 0.28 0.28 0.01 1.16 0.99 0.62
N2 0.08 0.01 0.75 0.74 0.02 0.33 0.01 0.57 0.01 0.02 0.01 0.00 0.01 0.01 0.03 0.59 0.55 0.45 0.47 0.02 1.08 0.86 0.66
N3 0.07 0.01 0.61 0.59 0.00 0.25 0.01 0.39 0.01 0.01 0.01 0.01 0.00 0.01 0.02 0.41 0.35 0.38 0.32 0.01 0.95 0.79 0.53
N7 0.01 0.01 0.22 0.30 0.01 0.17 0.00 0.34 0.02 0.00 0.01 0.01 0.01 0.00 0.01 0.48 0.28 0.13 0.63 0.04 1.56 1.33 1.01
N9 0.01 0.02 0.03 0.20 0.01 0.06 0.01 0.18 0.02 0.00 0.02 0.03 0.02 0.01 0.00 0.21 0.12 0.02 0.38 0.03 1.08 0.86 0.64
O2' 0.02 0.40 0.01 0.02 0.14 0.32 0.25 0.10 0.20 0.52 0.23 0.59 0.41 0.48 0.21 0.00 0.05 0.21 0.37 0.27 1.00 0.53 0.51
O3' 0.29 0.41 0.02 0.01 0.14 0.02 0.18 0.22 0.25 0.31 0.34 0.55 0.35 0.28 0.12 0.05 0.00 0.23 0.37 0.27 0.43 0.52 0.31
O4' 0.01 0.38 0.01 0.02 0.19 0.00 0.08 0.01 0.16 0.22 0.28 0.45 0.38 0.13 0.02 0.21 0.23 0.00 0.18 0.11 0.50 0.32 0.25
O5' 0.25 0.33 0.50 0.31 0.29 0.02 0.40 0.01 0.34 0.66 0.28 0.47 0.32 0.63 0.38 0.37 0.37 0.18 0.00 0.39 0.02 0.02 0.01
O6 0.03 0.01 0.13 0.44 0.01 0.10 0.02 0.20 0.01 0.04 0.01 0.02 0.01 0.04 0.03 0.27 0.27 0.11 0.39 0.00 1.41 1.25 0.83
OP1 0.78 1.04 1.16 0.53 1.07 0.37 1.31 0.32 1.30 1.47 1.16 1.08 0.95 1.56 1.08 1.00 0.43 0.50 0.02 1.41 0.00 0.01 0.01
OP2 0.53 0.86 0.66 0.32 0.90 0.26 1.13 0.33 1.14 1.18 0.99 0.86 0.79 1.33 0.86 0.53 0.52 0.32 0.02 1.25 0.01 0.00 0.01
P 0.40 0.58 0.70 0.25 0.60 0.07 0.78 0.02 0.74 0.96 0.62 0.66 0.53 1.01 0.64 0.51 0.31 0.25 0.01 0.83 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.63 0.56 0.64 0.73 0.39 0.94 0.41 1.30 0.49 0.56 0.46 0.34 0.67 0.69 0.61 0.93 1.12 1.57 1.53 1.24
C2 0.21 0.20 0.33 0.34 0.21 0.36 0.21 0.58 0.19 0.19 0.20 0.27 0.26 0.33 0.27 0.37 0.43 0.61 1.13 0.50
C2' 0.80 0.65 0.89 1.02 0.47 1.19 0.54 1.51 0.64 0.70 0.53 0.38 0.73 0.91 1.02 1.14 1.47 1.74 2.02 1.57
C3' 1.28 1.13 1.19 1.42 0.89 1.73 0.95 2.11 1.08 1.17 0.97 0.74 1.23 1.19 1.36 1.70 1.99 2.36 2.44 2.14
C4 0.34 0.31 0.43 0.43 0.22 0.53 0.24 0.79 0.27 0.30 0.25 0.21 0.38 0.46 0.33 0.54 0.61 0.90 1.15 0.65
C4' 1.14 0.96 1.09 1.31 0.72 1.61 0.79 2.03 0.93 1.01 0.80 0.58 1.07 1.12 1.24 1.53 1.90 2.40 2.25 2.07
C5 0.25 0.24 0.40 0.36 0.20 0.34 0.21 0.57 0.21 0.22 0.20 0.23 0.31 0.44 0.27 0.35 0.45 0.63 1.02 0.44
C5' 1.36 1.10 1.33 1.56 0.84 1.84 0.94 2.27 1.10 1.19 0.90 0.68 1.20 1.41 1.52 1.73 2.21 2.64 2.48 2.33
C6 0.25 0.27 0.40 0.37 0.17 0.24 0.17 0.38 0.18 0.22 0.25 0.16 0.33 0.42 0.33 0.18 0.43 0.38 1.03 0.42
C8 0.52 0.52 0.58 0.59 0.46 0.70 0.46 1.00 0.48 0.50 0.49 0.46 0.58 0.63 0.46 0.71 0.84 1.14 1.18 0.86
N1 0.22 0.26 0.37 0.36 0.27 0.27 0.25 0.44 0.23 0.23 0.28 0.30 0.29 0.35 0.32 0.24 0.43 0.40 1.09 0.47
N2 0.21 0.21 0.31 0.34 0.28 0.37 0.28 0.59 0.23 0.20 0.23 0.37 0.25 0.29 0.27 0.37 0.43 0.60 1.18 0.53
N3 0.31 0.27 0.39 0.41 0.17 0.52 0.19 0.78 0.22 0.26 0.19 0.19 0.35 0.41 0.31 0.53 0.58 0.89 1.20 0.66
N7 0.36 0.37 0.48 0.42 0.39 0.44 0.38 0.67 0.35 0.35 0.37 0.45 0.41 0.53 0.31 0.45 0.56 0.78 0.99 0.54
N9 0.51 0.47 0.55 0.59 0.36 0.74 0.37 1.05 0.41 0.46 0.40 0.33 0.56 0.59 0.47 0.75 0.86 1.22 1.29 0.92
O2' 0.83 0.64 1.09 1.22 0.61 1.23 0.72 1.54 0.76 0.74 0.55 0.58 0.68 1.07 1.30 1.10 1.61 1.82 2.25 1.70
O3' 1.54 1.27 1.45 1.71 0.92 2.08 1.04 2.46 1.24 1.36 1.02 0.70 1.40 1.46 1.70 2.01 2.37 2.77 2.91 2.57
O4' 0.90 0.76 0.89 1.01 0.53 1.25 0.58 1.63 0.69 0.79 0.61 0.43 0.88 0.97 0.92 1.20 1.41 1.98 1.69 1.57
O5' 1.53 1.29 1.52 1.71 1.05 1.93 1.15 2.28 1.30 1.38 1.10 0.88 1.37 1.59 1.68 1.83 2.20 2.50 2.35 2.24
O6 0.41 0.46 0.51 0.50 0.28 0.37 0.24 0.41 0.30 0.38 0.44 0.18 0.52 0.52 0.48 0.30 0.60 0.43 1.09 0.61
OP1 2.09 1.83 2.08 2.21 1.65 2.42 1.76 2.73 1.88 1.93 1.68 1.52 1.87 2.24 2.25 2.29 2.82 2.77 2.84 2.67
OP2 2.34 2.03 2.32 2.43 1.82 2.59 1.96 2.79 2.12 2.17 1.84 1.64 2.05 2.41 2.40 2.52 2.81 2.68 2.77 2.64
P 1.84 1.53 1.84 1.98 1.29 2.18 1.42 2.47 1.58 1.65 1.33 1.12 1.59 2.00 1.98 2.07 2.46 2.56 2.46 2.38

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.01 0.02 0.00 0.02 0.03 0.02 0.01 0.02 0.02 0.04 0.02 0.12 0.01 0.22 0.73 0.15 0.33
C2 0.03 0.00 0.12 0.17 0.01 0.20 0.01 0.34 0.01 0.01 0.01 0.02 0.00 0.17 0.14 0.21 0.29 0.40 0.66 0.16
C2' 0.00 0.12 0.00 0.00 0.04 0.02 0.12 0.06 0.14 0.02 0.08 0.05 0.24 0.00 0.02 0.01 0.31 0.71 0.32 0.25
C3' 0.01 0.17 0.00 0.00 0.17 0.00 0.24 0.01 0.25 0.11 0.17 0.18 0.28 0.02 0.01 0.02 0.37 0.46 0.40 0.12
C4 0.02 0.01 0.04 0.17 0.00 0.12 0.00 0.25 0.01 0.01 0.00 0.00 0.01 0.17 0.14 0.04 0.64 0.47 1.26 0.76
C4' 0.00 0.20 0.02 0.00 0.12 0.00 0.26 0.00 0.29 0.07 0.15 0.14 0.41 0.13 0.03 0.00 0.01 0.70 0.29 0.38
C5 0.02 0.01 0.12 0.24 0.00 0.26 0.00 0.46 0.00 0.01 0.00 0.01 0.01 0.23 0.23 0.19 0.92 0.84 1.46 1.08
C5' 0.03 0.34 0.06 0.01 0.25 0.00 0.46 0.00 0.46 0.13 0.29 0.28 0.66 0.07 0.08 0.01 0.01 0.15 0.19 0.01
C6 0.02 0.01 0.14 0.25 0.01 0.29 0.00 0.46 0.00 0.00 0.01 0.02 0.01 0.23 0.22 0.24 0.87 0.78 1.13 0.91
N1 0.01 0.01 0.02 0.11 0.01 0.07 0.01 0.13 0.00 0.00 0.01 0.01 0.01 0.09 0.07 0.01 0.44 0.47 0.60 0.37
N3 0.02 0.01 0.08 0.17 0.00 0.15 0.00 0.29 0.01 0.01 0.00 0.01 0.01 0.17 0.12 0.14 0.38 0.25 0.92 0.37
N4 0.02 0.02 0.05 0.18 0.00 0.14 0.01 0.28 0.02 0.01 0.01 0.00 0.02 0.19 0.16 0.04 0.67 0.55 1.45 0.88
O2 0.04 0.00 0.24 0.28 0.01 0.41 0.01 0.66 0.01 0.01 0.01 0.02 0.00 0.32 0.27 0.39 0.44 0.78 0.71 0.45
O2' 0.02 0.17 0.00 0.02 0.17 0.13 0.23 0.07 0.23 0.09 0.17 0.19 0.32 0.00 0.04 0.09 0.14 1.05 0.34 0.51
O3' 0.12 0.14 0.02 0.01 0.14 0.03 0.23 0.08 0.22 0.07 0.12 0.16 0.27 0.04 0.00 0.07 0.37 0.51 0.37 0.17
O4' 0.01 0.21 0.01 0.02 0.04 0.00 0.19 0.01 0.24 0.01 0.14 0.04 0.39 0.09 0.07 0.00 0.19 0.76 0.26 0.47
O5' 0.22 0.29 0.31 0.37 0.64 0.01 0.92 0.01 0.87 0.44 0.38 0.67 0.44 0.14 0.37 0.19 0.00 0.01 0.01 0.00
OP1 0.73 0.40 0.71 0.46 0.47 0.70 0.84 0.15 0.78 0.47 0.25 0.55 0.78 1.05 0.51 0.76 0.01 0.00 0.01 0.01
OP2 0.15 0.66 0.32 0.40 1.26 0.29 1.46 0.19 1.13 0.60 0.92 1.45 0.71 0.34 0.37 0.26 0.01 0.01 0.00 0.01
P 0.33 0.16 0.25 0.12 0.76 0.38 1.08 0.01 0.91 0.37 0.37 0.88 0.45 0.51 0.17 0.47 0.00 0.01 0.01 0.00