ClaRNA

Doublet Group info: classifier/base-phosphate/W_5BPh/GC

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: base-phosphate
Desc: W_5BPh/GC
Sub-clusters:
count: 17     show
W_5BPh/GC/sub-001
W_5BPh/GC/sub-002
W_5BPh/GC/sub-003
W_5BPh/GC/sub-004
W_5BPh/GC/sub-005
W_5BPh/GC/sub-006
W_5BPh/GC/sub-007
W_5BPh/GC/sub-008
W_5BPh/GC/sub-009
W_5BPh/GC/sub-010
W_5BPh/GC/sub-011
W_5BPh/GC/sub-012
W_5BPh/GC/sub-013
W_5BPh/GC/sub-014
W_5BPh/GC/sub-015
W_5BPh/GC/sub-016
W_5BPh/GC/sub-017
Members:
count: 327
download members
3D2X:A29:A44
3D2G:B29:B44
3D2V:B29:B44
3D2V:A29:A44
3D2G:A29:A44
2CKY:B29:B44
3KNI:A2377:A2382
3OH5:A1471:A1352
2CKY:A29:A44
3U5H:51813:51816
3U5D:11807:11810
3OHJ:A2302:A2307
3KNK:A2377:A2382
3OHK:A2302:A2307
3OH5:A2302:A2307
3OH7:A2302:A2307
3CXC:0191:0415
3R8S:A1947:A1979
1N8R:A191:A415
2QEX:01046:01028
3G71:01046:01028
3CCQ:01046:01028
2OTJ:01046:01028
3CCE:01046:01028
3CCL:01046:01028
3CCS:01046:01028
3G6E:01046:01028
1VQN:01046:01028
1Q81:A1046:A1028
1YJW:01046:01028
1YHQ:01046:01028
3CC7:01046:01028
1VQ7:01046:01028
3CC2:01046:01028
3OHK:A213:A435
1NJI:A1046:A1028
1VQ5:01046:01028
3CCV:01046:01028
1YI2:01046:01028
1VQP:01046:01028
1VQ8:01046:01028
3I56:01046:01028
1VQL:01046:01028
1VQK:01046:01028
3OHJ:A213:A435
1VQ6:01046:01028
3CD6:01046:01028
1YIJ:01046:01028
1M90:A1046:A1028
1N8R:A1046:A1028
1VQO:01046:01028
3CCU:01046:01028
1JJ2:01046:01028
3CCQ:0615:02375
3I56:0615:02375
1S72:01046:01028
3CC4:01046:01028
1Q86:A1046:A1028
3CXC:01046:01028
1YIT:01046:01028
1KD1:A1046:A1028
3CCR:01046:01028
3CMA:01046:01028
1K8A:A1046:A1028
1Q81:A615:A2375
2QA4:01045:01027
1K9M:A1046:A1028
3CME:01046:01028
1VQM:01046:01028
1YJN:01046:01028
1Q82:A1046:A1028
3KNH:A556:A723
2OTL:01046:01028
1FFK:01045:01027
3CME:0615:02375
3CCL:0615:02375
1VQ4:01046:01028
1VQ9:0615:02375
3CPW:0615:02375
1YJ9:0615:02375
1K9M:A615:A2375
3CCS:0615:02375
1YIJ:0615:02375
1YHQ:0615:02375
3CC7:0615:02375
1VQL:0615:02375
1VQN:0615:02375
3KNK:A579:A2404
1VQK:0615:02375
2ZJR:X500:X2286
3CCM:0615:02375
2J03:A579:A2376
2J01:A579:A2376
3KNI:A579:A2404
2UXC:A565:A732
2UUA:A565:A732
2QEX:01335:0825
1JJ2:01335:0825
1S72:01335:0825
1YJN:01335:0825
3CC2:01335:0825
3CXC:01335:0825
1Q82:A1335:A825
1VQ7:01335:0825
3CCJ:01335:0825
1YIT:01335:0825
1VQ5:01335:0825
2OTJ:01335:0825
1YI2:01335:0825
1YIJ:01335:0825
1YHQ:01335:0825
3CCE:01335:0825
3I56:01335:0825
3CCR:01335:0825
1QVG:01335:0825
3CCQ:01335:0825
1VQ4:01335:0825
1YJW:01335:0825
3G6E:01335:0825
1M90:A1335:A825
1VQ6:01335:0825
1Q81:A1335:A825
1Q86:A1335:A825
3R8O:A585:A752
3CCL:01335:0825
3G71:01335:0825
3CCV:01335:0825
1FFK:01288:0824
3CCU:01335:0825
3R8S:A775:A2065
3OH7:A570:A544
3OHK:A570:A544
3OHJ:A570:A544
3R8T:A775:A2064
3F1F:A579:A551
3F1H:A579:A551
2ZJR:X491:X462
3I56:01337:02586
3G71:01337:02586
3CCL:01337:02586
3CXC:01337:02586
1YIT:01337:02586
2OTL:01337:02586
1K8A:A1337:A2586
3CCR:01337:02586
1YIJ:01337:02586
1Q86:A1337:A2586
1YJW:01337:02586
1KD1:A1337:A2586
1NJI:A1337:A2586
1S72:01337:02586
1K9M:A1337:A2586
1FFK:01290:02538
3CC2:01337:02586
1JJ2:01337:02586
1M90:A1337:A2586
2OTJ:01337:02586
1VQ7:01337:02586
3R8O:A29:A46
3SD3:A35:A78
3OHY:A378:A359
2J02:A378:A359
3F1E:A378:A359
3F1G:A378:A359
3OGY:A378:A359
3OHC:A378:A359
3OHD:A378:A359
2ZJR:X1722:X1683
3KNI:A1752:A1714
3R8T:A1821:A1783
3R8S:A1821:A1783
3R8T:A1049:A1095
2J01:A1753:A1715
3F1H:A1831:A1793
2J03:A1753:A1715
3OHK:A1753:A1715
3OHJ:A1753:A1715
3OH5:A1753:A1715
3U5H:52338:8150
3OH7:A1753:A1715
3KNK:A1752:A1714
3KNK:A1253:A1580
3KNI:A1254:A1580
3F1H:A1318:A1659
3F1F:A1318:A1659
3OHJ:A1248:A1581
3OHK:A1248:A1581
3OH5:A1248:A1581
3OH7:A1248:A1581
3OHZ:A1248:A1581
3OI1:A1248:A1581
2ZJR:X969:X1015
3KNK:A2513:A2491
3U5H:51430:51822
3U5D:11424:11816
3OH7:A2438:A2416
1Y39:D5:D51
3U5H:52440:52419
1QA6:C5:C51
1QA6:D5:D51
2ZJR:X1273:X1287
1YJW:02193:02177
1HC8:D5:D51
1Y39:C5:C51
1YJN:02193:02177
3CCM:02193:02177
1HC8:C5:C51
1VQ5:02193:02177
3CCU:02193:02177
1FG0:A184:A168
2QEX:02193:02177
1N8R:A2193:A2177
1Q81:A2193:A2177
1VQ6:02193:02177
3CME:02193:02177
1K8A:A2193:A2177
1YJ9:02193:02177
1NJI:A2193:A2177
3CMA:02193:02177
1VQ7:02193:02177
1VQ8:02193:02177
1K9M:A2193:A2177
1Q82:A2193:A2177
3CC4:02193:02177
3CCJ:0707:0695
3CCR:0707:0695
3CCE:0707:0695
1VQK:02193:02177
1VQ9:02193:02177
1VQN:02193:02177
1VQO:02193:02177
3CCQ:0707:0695
1VQL:02193:02177
1VQM:02193:02177
1YJW:0707:0695
1VQP:02193:02177
3CC2:02193:02177
3G71:0707:0695
3I56:0707:0695
1Q81:A707:A695
1VQ9:0707:0695
3CCL:0707:0695
3CME:0707:0695
3CCS:0707:0695
1N8R:A707:A695
3CCU:0707:0695
1QVG:0707:0695
3CCM:0707:0695
1M90:A707:A695
1JJ2:0707:0695
2OTJ:0707:0695
3G6E:0707:0695
1YIT:0707:0695
1VQ6:0707:0695
1YI2:0707:0695
1S72:0707:0695
1YJ9:0707:0695
1Q86:A707:A695
3CCV:0707:0695
3CXC:0707:0695
2OTL:0707:0695
1YJN:0707:0695
1YIJ:0707:0695
1NJI:A707:A695
2QEX:0707:0695
1VQ7:0707:0695
1VQ4:0707:0695
1VQN:0707:0695
1K9M:A707:A695
1KD1:A707:A695
3CC4:0707:0695
3CC7:0707:0695
1VQ8:0707:0695
1Q82:A707:A695
1VQL:0707:0695
3CC2:0707:0695
1VQM:0707:0695
1YHQ:0707:0695
3CPW:0707:0695
1VQO:0707:0695
1VQ5:0707:0695
1VQK:0707:0695
1K8A:A707:A695
1FFK:0706:0694
1VQP:0707:0695
3CMA:0707:0695
3CD6:0707:0695
2OTL:0615:02375
3CMA:0615:02375
3CCE:0615:02375
1NJI:A615:A2375
1VQ7:0615:02375
3G71:0615:02375
1K8A:A615:A2375
3CCU:0615:02375
1VQ4:0615:02375
1YJ9:01046:01028
3CXC:0615:02375
1QVG:0615:02375
1JJ2:0615:02375
1QVG:01046:01028
1KD1:A615:A2375
3CD6:0615:02375
3R8S:A569:A2492
1S72:0615:02375
3CC2:0615:02375
3CCV:0615:02375
2OTJ:0615:02375
2QEX:0615:02375
1YJN:0615:02375
1YJW:0615:02375
3CC4:0615:02375
1Q86:A615:A2375
1YI2:0615:02375
1VQ8:0615:02375
1N8R:A615:A2375
1Q82:A615:A2375
1VQM:0615:02375
1VQ5:0615:02375
3CCR:0615:02375
3G6E:0615:02375
1M90:A615:A2375
1YIT:0615:02375
1VQ6:0615:02375
1FFK:0614:02328
1VQO:0615:02375
1VQP:0615:02375
Closest classifer groups: show all      show selected
Group Members RMSD
base-phosphate/W_5BPh 855 0.470
base-ribose/W_4BR 362 0.497
base-ribose/H_0BR 590 0.645
stacking/>> 9173 1.347
bp/SS_tran 3496 1.824
base-ribose/H_7BR 1398 1.854
bp/HW_cis 23 2.023
bp/WH_cis 23 2.023
stacking/>< 987 2.036
bp/HS_tran 428 2.143

Extra

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Reference image (generated by PyMOL):
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All members (generated by PyMOL):
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