sequences=17
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1059-A1058
X
>1GID-B136-B135
X
>1GID-A136-A135
X
>3R8N-A206-A207
X
>2J00-W46-W49
X
>1UVM-E1-E2
X
>1UVM-F1-F2
X
>1UVM-D1-D2
X
>3R8S-A1333-A1595
X
>1ZJW-B44-B43
X
>1O0B-B44-B43
X
>1GTS-B44-B43
X
>1GTR-B44-B43
X
>1DDL-D0-D1
X
>1QRU-B44-B43
X
>1QRS-B44-B43
X
>1QRT-B44-B43
X
</seq>
<hsp>
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0 2:0.301074053329
0 3:0.469943569124
0 4:0.561713323466
0 5:0.821555457996
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15 16:0.0698978713933
</hsp>