ClaRNA

Doublet Group distance statistics: 2014

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Distances from reference structure (by RMSD)

18, 18, 81, 31, 12, 5, 7, 4, 2, 0, 0, 0, 9, 2, 0, 0, 0, 2, 3, 182,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
O4' B 0, 0.103, 0.923, 1.742, 3.934 max_d=3.934 avg_d=0.923 std_dev=0.819
C1' B 0, 0.061, 1.019, 1.976, 3.824 max_d=3.824 avg_d=1.019 std_dev=0.957
C6 B 0, 0.009, 1.016, 2.023, 3.165 max_d=3.165 avg_d=1.016 std_dev=1.007
N1 B 0, -0.103, 0.918, 1.939, 3.656 max_d=3.656 avg_d=0.918 std_dev=1.021
C5 A 0, 0.101, 1.158, 2.214, 4.055 max_d=4.055 avg_d=1.158 std_dev=1.057
C6 A 0, -0.049, 1.160, 2.370, 3.931 max_d=3.931 avg_d=1.160 std_dev=1.209
C4' B 0, -0.008, 1.237, 2.481, 5.873 max_d=5.873 avg_d=1.237 std_dev=1.244
N1 A 0, -0.091, 1.180, 2.451, 4.375 max_d=4.375 avg_d=1.180 std_dev=1.271
C5 B 0, 0.111, 1.461, 2.812, 5.113 max_d=5.113 avg_d=1.461 std_dev=1.350
C4 A 0, 0.226, 1.610, 2.993, 4.745 max_d=4.745 avg_d=1.610 std_dev=1.383
C2' B 0, 0.211, 1.656, 3.100, 5.974 max_d=5.974 avg_d=1.656 std_dev=1.445
C3' B 0, 0.244, 1.707, 3.169, 5.433 max_d=5.433 avg_d=1.707 std_dev=1.462
C2 A 0, -0.088, 1.416, 2.920, 4.405 max_d=4.405 avg_d=1.416 std_dev=1.504
C2 B 0, -0.027, 1.535, 3.096, 5.132 max_d=5.132 avg_d=1.535 std_dev=1.562
N3 A 0, 0.212, 1.798, 3.384, 4.705 max_d=4.705 avg_d=1.798 std_dev=1.586
C4 B 0, -0.040, 1.662, 3.364, 5.884 max_d=5.884 avg_d=1.662 std_dev=1.702
C5' B 0, -0.031, 1.707, 3.445, 7.373 max_d=7.373 avg_d=1.707 std_dev=1.738
C1' A 0, 0.160, 1.913, 3.667, 5.475 max_d=5.475 avg_d=1.913 std_dev=1.754
O5' B 0, 0.121, 1.904, 3.686, 7.763 max_d=7.763 avg_d=1.904 std_dev=1.782
O2' B 0, 0.161, 2.000, 3.838, 8.029 max_d=8.029 avg_d=2.000 std_dev=1.839
N3 B 0, -0.128, 1.749, 3.626, 5.839 max_d=5.839 avg_d=1.749 std_dev=1.877
O2 B 0, 0.225, 2.140, 4.055, 5.957 max_d=5.957 avg_d=2.140 std_dev=1.915
C2' A 0, 0.380, 2.299, 4.218, 5.769 max_d=5.769 avg_d=2.299 std_dev=1.919
O3' B 0, 0.403, 2.323, 4.243, 7.807 max_d=7.807 avg_d=2.323 std_dev=1.920
O2' A 0, 0.639, 2.642, 4.645, 6.352 max_d=6.352 avg_d=2.642 std_dev=2.003
O4 A 0, 0.191, 2.205, 4.218, 6.975 max_d=6.975 avg_d=2.205 std_dev=2.013
O2 A 0, -0.194, 1.857, 3.908, 5.770 max_d=5.770 avg_d=1.857 std_dev=2.051
N4 B 0, 0.054, 2.194, 4.334, 7.930 max_d=7.930 avg_d=2.194 std_dev=2.140
P B 0, 0.112, 2.389, 4.666, 9.710 max_d=9.710 avg_d=2.389 std_dev=2.277
OP2 B 0, 0.728, 3.080, 5.432, 8.844 max_d=8.844 avg_d=3.080 std_dev=2.352
O4' A 0, 0.195, 2.754, 5.312, 7.060 max_d=7.060 avg_d=2.754 std_dev=2.558
OP1 B 0, 0.402, 2.986, 5.571, 11.986 max_d=11.986 avg_d=2.986 std_dev=2.584
C3' A 0, 0.310, 3.157, 6.003, 8.424 max_d=8.424 avg_d=3.157 std_dev=2.846
O3' A 0, 0.642, 3.665, 6.688, 9.988 max_d=9.988 avg_d=3.665 std_dev=3.023
C4' A 0, 0.314, 3.503, 6.692, 8.657 max_d=8.657 avg_d=3.503 std_dev=3.189
O5' A 0, 0.446, 3.837, 7.227, 10.252 max_d=10.252 avg_d=3.837 std_dev=3.391
C5' A 0, 0.477, 4.217, 7.958, 10.527 max_d=10.527 avg_d=4.217 std_dev=3.740
OP2 A 0, 0.740, 4.633, 8.527, 12.202 max_d=12.202 avg_d=4.633 std_dev=3.894
P A 0, 0.582, 4.706, 8.830, 12.005 max_d=12.005 avg_d=4.706 std_dev=4.124
OP1 A 0, 0.644, 5.534, 10.425, 12.989 max_d=12.989 avg_d=5.534 std_dev=4.891

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.02 0.02 0.01 0.02 0.08 0.02 0.01 0.02 0.04 0.02 0.32 0.03 0.01 0.25 0.26 0.38 0.22
C2 0.02 0.00 0.25 0.26 0.02 0.23 0.02 0.40 0.01 0.01 0.01 0.01 0.27 0.21 0.02 0.27 0.46 0.82 0.66 0.51
C2' 0.01 0.25 0.00 0.01 0.07 0.02 0.17 0.21 0.22 0.04 0.19 0.43 0.01 0.04 0.08 0.02 0.49 0.50 0.65 0.50
C3' 0.02 0.26 0.01 0.00 0.37 0.01 0.41 0.02 0.37 0.22 0.31 0.32 0.03 0.01 0.39 0.03 0.16 0.30 0.26 0.22
C4 0.02 0.02 0.07 0.37 0.00 0.16 0.01 0.24 0.01 0.02 0.01 0.02 0.38 0.18 0.01 0.05 0.57 0.74 1.06 0.66
C4' 0.01 0.23 0.02 0.01 0.16 0.00 0.33 0.01 0.36 0.09 0.17 0.48 0.30 0.03 0.17 0.01 0.02 0.16 0.24 0.07
C5 0.02 0.02 0.17 0.41 0.01 0.33 0.00 0.50 0.01 0.01 0.01 0.02 0.50 0.23 0.02 0.22 0.86 0.86 1.37 1.01
C5' 0.08 0.40 0.21 0.02 0.24 0.01 0.50 0.00 0.53 0.12 0.31 0.79 0.13 0.22 0.27 0.02 0.01 0.26 0.31 0.02
C6 0.02 0.01 0.22 0.37 0.01 0.36 0.01 0.53 0.00 0.01 0.01 0.02 0.47 0.18 0.02 0.29 0.84 0.75 1.18 0.93
N1 0.01 0.01 0.04 0.22 0.02 0.09 0.01 0.12 0.01 0.00 0.01 0.02 0.21 0.15 0.02 0.02 0.38 0.42 0.62 0.38
N3 0.02 0.01 0.19 0.31 0.01 0.17 0.01 0.31 0.01 0.01 0.00 0.02 0.29 0.16 0.02 0.18 0.45 0.86 0.78 0.52
O2 0.04 0.01 0.43 0.32 0.02 0.48 0.02 0.79 0.02 0.02 0.02 0.00 0.47 0.36 0.03 0.49 0.83 1.27 0.95 0.96
O2' 0.02 0.27 0.01 0.03 0.38 0.30 0.50 0.13 0.47 0.21 0.29 0.47 0.00 0.06 0.41 0.21 0.37 0.46 0.72 0.43
O3' 0.32 0.21 0.04 0.01 0.18 0.03 0.23 0.22 0.18 0.15 0.16 0.36 0.06 0.00 0.21 0.22 0.25 0.53 0.43 0.39
O4 0.03 0.02 0.08 0.39 0.01 0.17 0.02 0.27 0.02 0.02 0.02 0.03 0.41 0.21 0.00 0.06 0.60 0.84 1.16 0.72
O4' 0.01 0.27 0.02 0.03 0.05 0.01 0.22 0.02 0.29 0.02 0.18 0.49 0.21 0.22 0.06 0.00 0.19 0.20 0.28 0.19
O5' 0.25 0.46 0.49 0.16 0.57 0.02 0.86 0.01 0.84 0.38 0.45 0.83 0.37 0.25 0.60 0.19 0.00 0.02 0.02 0.01
OP1 0.26 0.82 0.50 0.30 0.74 0.16 0.86 0.26 0.75 0.42 0.86 1.27 0.46 0.53 0.84 0.20 0.02 0.00 0.01 0.01
OP2 0.38 0.66 0.65 0.26 1.06 0.24 1.37 0.31 1.18 0.62 0.78 0.95 0.72 0.43 1.16 0.28 0.02 0.01 0.00 0.01
P 0.22 0.51 0.50 0.22 0.66 0.07 1.01 0.02 0.93 0.38 0.52 0.96 0.43 0.39 0.72 0.19 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 2.36 3.29 2.76 2.20 3.25 1.48 2.72 0.91 2.33 2.66 3.50 3.50 3.55 2.78 2.28 1.63 0.96 0.97 0.95 0.49
C2 1.85 3.02 1.96 1.47 3.44 1.09 2.83 0.86 2.26 2.38 3.51 3.81 3.05 1.88 1.35 1.32 0.66 1.00 1.12 0.44
C2' 2.12 2.91 2.58 2.13 2.91 1.45 2.47 1.01 2.09 2.35 3.10 3.18 3.18 2.70 2.39 1.50 0.99 1.06 0.93 0.63
C3' 2.48 3.08 3.09 2.66 2.91 1.85 2.46 1.19 2.16 2.55 3.16 3.17 3.44 3.31 3.05 1.79 1.23 1.08 0.87 0.64
C4 1.42 2.29 1.41 1.16 2.80 1.07 2.44 1.04 1.93 1.87 2.71 3.10 2.24 1.32 1.02 1.21 0.52 0.97 1.22 0.43
C4' 2.97 3.44 3.68 3.15 2.96 2.30 2.45 1.50 2.32 2.90 3.37 3.11 3.92 3.95 3.51 2.22 1.52 1.18 0.79 0.79
C5 1.43 2.20 1.53 1.24 2.47 0.87 2.19 0.74 1.84 1.84 2.48 2.62 2.20 1.37 1.10 1.08 0.65 0.96 1.08 0.42
C5' 3.28 3.34 4.10 3.70 2.60 2.86 2.15 2.03 2.25 2.95 3.08 2.63 3.86 4.48 4.24 2.62 1.95 1.49 0.85 1.15
C6 1.86 2.63 2.14 1.78 2.70 1.16 2.34 0.76 2.03 2.20 2.83 2.82 2.72 2.01 1.72 1.33 0.87 0.95 0.99 0.46
N1 2.02 3.01 2.28 1.79 3.16 1.20 2.66 0.79 2.23 2.43 3.31 3.39 3.12 2.19 1.74 1.41 0.82 0.98 1.01 0.46
N3 1.63 2.71 1.64 1.28 3.27 1.12 2.73 1.02 2.13 2.15 3.23 3.67 2.66 1.58 1.14 1.29 0.55 0.99 1.20 0.44
O2 1.95 3.22 2.06 1.52 3.67 1.15 2.95 0.90 2.34 2.49 3.77 4.15 3.29 2.02 1.43 1.38 0.66 1.01 1.12 0.44
O2' 2.05 2.88 2.35 1.87 3.05 1.39 2.70 1.16 2.26 2.35 3.15 3.37 3.12 2.52 2.10 1.56 1.01 1.21 1.27 0.97
O3' 2.40 3.14 2.96 2.49 3.17 1.69 2.71 1.05 2.29 2.57 3.33 3.54 3.48 3.20 2.89 1.70 1.08 1.04 0.99 0.63
O4 1.49 2.07 1.49 1.43 2.59 1.43 2.30 1.37 1.79 1.75 2.44 2.97 2.04 1.49 1.38 1.44 0.59 0.94 1.30 0.48
O4' 2.93 3.60 3.50 2.89 3.19 2.08 2.63 1.31 2.47 3.02 3.60 3.31 4.00 3.59 3.02 2.13 1.40 1.11 0.87 0.73
O5' 3.08 3.00 3.85 3.72 2.31 2.92 1.95 2.23 2.12 2.74 2.73 2.28 3.43 4.09 4.27 2.58 2.16 1.76 1.11 1.44
OP1 3.18 2.73 3.96 3.95 1.89 3.35 1.64 2.69 1.95 2.60 2.32 1.83 3.24 4.46 4.86 2.83 2.45 2.19 1.29 1.77
OP2 3.05 2.62 3.61 3.84 1.95 3.38 1.82 3.03 2.16 2.61 2.29 1.83 2.93 3.81 4.37 2.90 2.92 2.61 1.88 2.32
P 3.32 2.88 4.04 4.13 2.02 3.49 1.79 2.86 2.16 2.78 2.47 1.89 3.31 4.36 4.90 3.00 2.67 2.26 1.45 1.93

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.01 0.02 0.01 0.02 0.05 0.01 0.01 0.03 0.03 0.05 0.02 0.17 0.01 0.26 0.60 0.39 0.28
C2 0.03 0.00 0.12 0.16 0.01 0.12 0.02 0.22 0.01 0.01 0.01 0.02 0.01 0.15 0.14 0.15 0.59 0.99 0.76 0.61
C2' 0.01 0.12 0.00 0.01 0.06 0.02 0.13 0.10 0.15 0.04 0.09 0.06 0.23 0.00 0.03 0.02 0.33 0.57 0.36 0.34
C3' 0.01 0.16 0.01 0.00 0.21 0.01 0.28 0.02 0.28 0.13 0.17 0.22 0.24 0.02 0.01 0.02 0.37 0.53 0.25 0.33
C4 0.02 0.01 0.06 0.21 0.00 0.10 0.01 0.19 0.01 0.01 0.01 0.01 0.02 0.21 0.14 0.03 0.76 1.30 1.10 0.84
C4' 0.01 0.12 0.02 0.01 0.10 0.00 0.20 0.01 0.22 0.06 0.10 0.11 0.27 0.17 0.03 0.01 0.02 0.24 0.32 0.09
C5 0.02 0.02 0.13 0.28 0.01 0.20 0.00 0.34 0.00 0.01 0.01 0.01 0.02 0.26 0.23 0.11 0.84 1.38 1.18 0.96
C5' 0.05 0.22 0.10 0.02 0.19 0.01 0.34 0.00 0.35 0.12 0.20 0.20 0.45 0.08 0.12 0.02 0.01 0.28 0.43 0.02
C6 0.01 0.01 0.15 0.28 0.01 0.22 0.00 0.35 0.00 0.01 0.01 0.01 0.02 0.24 0.23 0.15 0.77 1.18 0.94 0.82
N1 0.01 0.01 0.04 0.13 0.01 0.06 0.01 0.12 0.01 0.00 0.01 0.02 0.02 0.12 0.09 0.02 0.52 0.91 0.65 0.53
N3 0.03 0.01 0.09 0.17 0.01 0.10 0.01 0.20 0.01 0.01 0.00 0.01 0.01 0.17 0.12 0.12 0.68 1.15 0.94 0.73
N4 0.03 0.02 0.06 0.22 0.01 0.11 0.01 0.20 0.01 0.02 0.01 0.00 0.02 0.22 0.16 0.04 0.80 1.39 1.24 0.93
O2 0.05 0.01 0.23 0.24 0.02 0.27 0.02 0.45 0.02 0.02 0.01 0.02 0.00 0.24 0.28 0.28 0.68 0.97 0.81 0.69
O2' 0.02 0.15 0.00 0.02 0.21 0.17 0.26 0.08 0.24 0.12 0.17 0.22 0.24 0.00 0.06 0.12 0.17 0.42 0.32 0.21
O3' 0.17 0.14 0.03 0.01 0.14 0.03 0.23 0.12 0.23 0.09 0.12 0.16 0.28 0.06 0.00 0.12 0.30 0.57 0.27 0.30
O4' 0.01 0.15 0.02 0.02 0.03 0.01 0.11 0.02 0.15 0.02 0.12 0.04 0.28 0.12 0.12 0.00 0.19 0.48 0.43 0.25
O5' 0.26 0.59 0.33 0.37 0.76 0.02 0.84 0.01 0.77 0.52 0.68 0.80 0.68 0.17 0.30 0.19 0.00 0.02 0.02 0.01
OP1 0.60 0.99 0.57 0.53 1.30 0.24 1.38 0.28 1.18 0.91 1.15 1.39 0.97 0.42 0.57 0.48 0.02 0.00 0.01 0.01
OP2 0.39 0.76 0.36 0.25 1.10 0.32 1.18 0.43 0.94 0.65 0.94 1.24 0.81 0.32 0.27 0.43 0.02 0.01 0.00 0.01
P 0.28 0.61 0.34 0.33 0.84 0.09 0.96 0.02 0.82 0.53 0.73 0.93 0.69 0.21 0.30 0.25 0.01 0.01 0.01 0.00