ClaRNA

Doublet Group distance statistics: 2021

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Distances from reference structure (by RMSD)

1, 0, 2, 0, 4, 8, 14, 27, 30, 29, 18, 7, 2, 3, 5, 18, 14, 3, 14, 115,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.468, 0.857, 1.247, 2.708 max_d=2.708 avg_d=0.857 std_dev=0.390
C6 A 0, 0.481, 0.921, 1.362, 2.663 max_d=2.663 avg_d=0.921 std_dev=0.441
C5 A 0, 0.554, 1.004, 1.453, 2.233 max_d=2.233 avg_d=1.004 std_dev=0.449
N1 A 0, 0.576, 1.073, 1.570, 2.942 max_d=2.942 avg_d=1.073 std_dev=0.497
C1' B 0, 0.137, 0.714, 1.291, 3.175 max_d=3.175 avg_d=0.714 std_dev=0.577
C6 B 0, 0.599, 1.189, 1.779, 3.764 max_d=3.764 avg_d=1.189 std_dev=0.590
C1' A 0, 0.557, 1.189, 1.820, 4.225 max_d=4.225 avg_d=1.189 std_dev=0.632
C2' B 0, 0.598, 1.322, 2.047, 4.705 max_d=4.705 avg_d=1.322 std_dev=0.725
O4' B 0, 0.167, 0.901, 1.634, 4.383 max_d=4.383 avg_d=0.901 std_dev=0.733
C2 B 0, 0.802, 1.585, 2.368, 3.625 max_d=3.625 avg_d=1.585 std_dev=0.783
C2 A 0, 0.716, 1.516, 2.316, 3.202 max_d=3.202 avg_d=1.516 std_dev=0.800
C5 B 0, 0.854, 1.691, 2.528, 4.010 max_d=4.010 avg_d=1.691 std_dev=0.837
C4' B 0, 0.381, 1.282, 2.183, 5.866 max_d=5.866 avg_d=1.282 std_dev=0.901
O5' B 0, 0.735, 1.646, 2.558, 6.248 max_d=6.248 avg_d=1.646 std_dev=0.911
C4 A 0, 0.423, 1.340, 2.257, 3.802 max_d=3.802 avg_d=1.340 std_dev=0.917
C3' B 0, 0.452, 1.395, 2.338, 5.025 max_d=5.025 avg_d=1.395 std_dev=0.943
O4' A 0, 0.385, 1.366, 2.347, 5.513 max_d=5.513 avg_d=1.366 std_dev=0.981
O2' B 0, 1.058, 2.044, 3.031, 6.587 max_d=6.587 avg_d=2.044 std_dev=0.987
O2 A 0, 0.950, 1.939, 2.927, 4.056 max_d=4.056 avg_d=1.939 std_dev=0.988
C5' B 0, 0.547, 1.589, 2.630, 7.427 max_d=7.427 avg_d=1.589 std_dev=1.042
C2' A 0, 0.228, 1.278, 2.327, 5.804 max_d=5.804 avg_d=1.278 std_dev=1.050
O2 B 0, 1.012, 2.063, 3.114, 5.490 max_d=5.490 avg_d=2.063 std_dev=1.051
N3 A 0, 0.589, 1.640, 2.691, 4.367 max_d=4.367 avg_d=1.640 std_dev=1.051
P B 0, 0.897, 1.969, 3.042, 7.829 max_d=7.829 avg_d=1.969 std_dev=1.073
O3' B 0, 1.261, 2.366, 3.470, 7.078 max_d=7.078 avg_d=2.366 std_dev=1.105
C4 B 0, 0.979, 2.086, 3.193, 3.998 max_d=3.998 avg_d=2.086 std_dev=1.107
N3 B 0, 0.997, 2.104, 3.212, 3.956 max_d=3.956 avg_d=2.104 std_dev=1.108
O4 A 0, 0.430, 1.683, 2.935, 5.639 max_d=5.639 avg_d=1.683 std_dev=1.253
O2' A 0, 0.739, 2.068, 3.396, 7.349 max_d=7.349 avg_d=2.068 std_dev=1.329
OP1 B 0, 1.303, 2.657, 4.011, 7.124 max_d=7.124 avg_d=2.657 std_dev=1.354
C4' A 0, -0.121, 1.328, 2.777, 6.849 max_d=6.849 avg_d=1.328 std_dev=1.449
C3' A 0, -0.190, 1.300, 2.789, 7.460 max_d=7.460 avg_d=1.300 std_dev=1.489
O4 B 0, 1.231, 2.741, 4.251, 5.484 max_d=5.484 avg_d=2.741 std_dev=1.510
OP2 B 0, 0.504, 2.058, 3.611, 8.634 max_d=8.634 avg_d=2.058 std_dev=1.554
O3' A 0, 0.189, 2.007, 3.824, 9.130 max_d=9.130 avg_d=2.007 std_dev=1.817
C5' A 0, 0.028, 1.918, 3.808, 8.985 max_d=8.985 avg_d=1.918 std_dev=1.890
O5' A 0, 0.071, 2.130, 4.189, 9.498 max_d=9.498 avg_d=2.130 std_dev=2.059
P A 0, -0.371, 2.151, 4.672, 10.570 max_d=10.570 avg_d=2.151 std_dev=2.522
OP2 A 0, 0.036, 2.629, 5.222, 11.368 max_d=11.368 avg_d=2.629 std_dev=2.593
OP1 A 0, 0.339, 3.222, 6.105, 12.928 max_d=12.928 avg_d=3.222 std_dev=2.883

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.13 0.02 0.01 0.03 0.06 0.03 0.32 0.03 0.01 0.28 0.30 0.40 0.21
C2 0.03 0.00 0.20 0.29 0.02 0.16 0.02 0.29 0.01 0.01 0.01 0.01 0.26 0.22 0.02 0.18 0.50 0.47 0.61 0.44
C2' 0.01 0.20 0.00 0.01 0.07 0.03 0.16 0.24 0.20 0.03 0.14 0.35 0.01 0.04 0.08 0.02 0.44 0.55 0.80 0.53
C3' 0.02 0.29 0.01 0.00 0.40 0.01 0.41 0.03 0.36 0.24 0.36 0.32 0.03 0.01 0.42 0.02 0.24 0.40 0.42 0.26
C4 0.02 0.02 0.07 0.40 0.00 0.16 0.01 0.33 0.01 0.01 0.01 0.02 0.38 0.23 0.01 0.04 0.66 0.69 0.90 0.66
C4' 0.01 0.16 0.03 0.01 0.16 0.00 0.25 0.01 0.26 0.09 0.14 0.29 0.33 0.03 0.17 0.01 0.02 0.25 0.31 0.08
C5 0.02 0.02 0.16 0.41 0.01 0.25 0.00 0.44 0.01 0.01 0.01 0.02 0.43 0.30 0.01 0.15 0.75 0.81 0.98 0.79
C5' 0.13 0.29 0.24 0.03 0.33 0.01 0.44 0.00 0.43 0.23 0.30 0.45 0.14 0.24 0.35 0.03 0.01 0.33 0.34 0.02
C6 0.02 0.01 0.20 0.36 0.01 0.26 0.01 0.43 0.00 0.01 0.02 0.02 0.39 0.24 0.02 0.19 0.69 0.69 0.78 0.67
N1 0.01 0.01 0.03 0.24 0.01 0.09 0.01 0.23 0.01 0.00 0.01 0.02 0.22 0.13 0.02 0.03 0.45 0.41 0.51 0.36
N3 0.03 0.01 0.14 0.36 0.01 0.14 0.01 0.30 0.02 0.01 0.00 0.02 0.32 0.18 0.02 0.13 0.58 0.57 0.76 0.54
O2 0.06 0.01 0.35 0.32 0.02 0.29 0.02 0.45 0.02 0.02 0.02 0.00 0.36 0.40 0.03 0.32 0.61 0.61 0.72 0.59
O2' 0.03 0.26 0.01 0.03 0.38 0.33 0.43 0.14 0.39 0.22 0.32 0.36 0.00 0.08 0.41 0.23 0.32 0.51 0.86 0.46
O3' 0.32 0.22 0.04 0.01 0.23 0.03 0.30 0.24 0.24 0.13 0.18 0.40 0.08 0.00 0.27 0.25 0.30 0.52 0.44 0.33
O4 0.03 0.02 0.08 0.42 0.01 0.17 0.01 0.35 0.02 0.02 0.02 0.03 0.41 0.27 0.00 0.05 0.69 0.77 1.01 0.73
O4' 0.01 0.18 0.02 0.02 0.04 0.01 0.15 0.03 0.19 0.03 0.13 0.32 0.23 0.25 0.05 0.00 0.30 0.38 0.32 0.29
O5' 0.28 0.50 0.44 0.24 0.66 0.02 0.75 0.01 0.69 0.45 0.58 0.61 0.32 0.30 0.69 0.30 0.00 0.03 0.03 0.01
OP1 0.30 0.47 0.55 0.40 0.69 0.25 0.81 0.33 0.69 0.41 0.57 0.61 0.51 0.52 0.77 0.38 0.03 0.00 0.02 0.01
OP2 0.40 0.61 0.80 0.42 0.90 0.31 0.98 0.34 0.78 0.51 0.76 0.72 0.86 0.44 1.01 0.32 0.03 0.02 0.00 0.01
P 0.21 0.44 0.53 0.26 0.66 0.08 0.79 0.02 0.67 0.36 0.54 0.59 0.46 0.33 0.73 0.29 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 1.37 2.58 1.40 1.10 2.91 0.81 2.35 0.72 1.85 1.92 3.01 2.70 1.50 1.23 3.25 1.01 0.61 0.80 0.92 0.38
C2 1.46 2.91 1.16 0.85 3.65 0.77 2.98 0.73 2.31 2.23 3.58 2.86 1.16 0.87 4.11 1.18 0.61 0.79 1.15 0.34
C2' 1.02 2.14 1.16 1.03 2.66 0.78 2.15 0.82 1.60 1.54 2.64 2.22 1.35 1.29 3.08 0.74 0.64 0.97 0.85 0.62
C3' 1.05 1.85 1.36 1.27 2.25 0.88 1.83 0.75 1.37 1.36 2.22 1.97 1.60 1.59 2.61 0.75 0.67 1.04 0.91 0.56
C4 1.31 2.44 0.96 0.81 3.31 0.84 2.94 0.82 2.28 2.01 3.02 2.31 1.00 0.85 3.69 1.19 0.68 0.80 1.28 0.41
C4' 1.38 1.90 1.73 1.56 1.95 1.15 1.58 0.90 1.31 1.47 2.07 2.14 1.99 1.84 2.20 1.05 0.81 0.93 0.79 0.55
C5 1.10 2.06 0.93 0.80 2.71 0.69 2.46 0.69 1.95 1.71 2.51 1.97 1.01 0.86 2.95 0.96 0.62 0.80 1.10 0.34
C5' 1.59 1.61 1.99 1.92 1.45 1.50 1.26 1.19 1.21 1.41 1.58 1.85 2.31 2.25 1.60 1.32 1.07 1.10 0.77 0.80
C6 1.16 2.18 1.13 0.96 2.65 0.71 2.30 0.68 1.83 1.73 2.58 2.14 1.22 1.04 2.89 0.92 0.60 0.80 0.96 0.35
N1 1.33 2.60 1.21 0.94 3.12 0.73 2.58 0.69 2.03 2.00 3.12 2.60 1.26 1.01 3.45 1.03 0.59 0.79 1.01 0.34
N3 1.47 2.83 1.08 0.84 3.74 0.86 3.14 0.81 2.42 2.24 3.53 2.72 1.09 0.85 4.23 1.26 0.66 0.79 1.26 0.38
O2 1.56 3.11 1.23 0.87 3.85 0.81 3.07 0.75 2.37 2.34 3.84 3.12 1.22 0.88 4.40 1.24 0.61 0.78 1.16 0.34
O2' 1.17 2.43 1.17 0.93 2.95 0.78 2.39 0.89 1.81 1.77 2.96 2.55 1.33 1.16 3.41 0.89 0.73 1.07 1.01 0.83
O3' 1.02 1.83 1.31 1.20 2.26 0.85 1.84 0.75 1.37 1.34 2.22 1.97 1.56 1.55 2.67 0.75 0.68 1.14 0.99 0.63
O4 1.38 2.37 1.03 0.96 3.29 1.02 3.00 0.97 2.32 2.00 2.93 2.25 1.06 1.01 3.72 1.32 0.78 0.83 1.40 0.52
O4' 1.58 2.39 1.78 1.50 2.40 1.14 1.95 0.91 1.65 1.86 2.59 2.62 1.92 1.63 2.61 1.21 0.84 0.83 0.91 0.52
O5' 1.70 1.61 2.08 2.14 1.50 1.75 1.34 1.47 1.31 1.49 1.57 1.78 2.32 2.49 1.62 1.51 1.34 1.34 0.99 1.04
OP1 2.11 1.66 2.35 2.46 1.22 2.21 1.23 1.85 1.43 1.69 1.39 1.91 2.65 2.97 1.20 1.99 1.68 1.69 1.23 1.39
OP2 1.72 1.40 1.98 2.22 1.32 2.03 1.34 1.83 1.35 1.43 1.31 1.55 2.10 2.54 1.40 1.70 1.77 1.92 1.40 1.57
P 1.97 1.56 2.27 2.44 1.24 2.14 1.23 1.80 1.37 1.59 1.36 1.76 2.47 2.91 1.25 1.87 1.65 1.59 1.12 1.32

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.03 0.01 0.02 0.12 0.02 0.01 0.03 0.06 0.02 0.31 0.03 0.01 0.37 0.64 0.60 0.37
C2 0.03 0.00 0.28 0.34 0.02 0.21 0.02 0.40 0.01 0.01 0.01 0.01 0.25 0.22 0.02 0.26 0.63 0.93 0.98 0.64
C2' 0.01 0.28 0.00 0.01 0.07 0.02 0.21 0.23 0.28 0.04 0.20 0.50 0.01 0.04 0.08 0.03 0.42 0.79 0.55 0.50
C3' 0.02 0.34 0.01 0.00 0.42 0.01 0.42 0.03 0.37 0.25 0.40 0.42 0.03 0.01 0.46 0.02 0.31 0.55 0.43 0.33
C4 0.03 0.02 0.07 0.42 0.00 0.20 0.01 0.40 0.01 0.02 0.01 0.02 0.37 0.26 0.01 0.05 0.96 1.22 1.58 1.05
C4' 0.01 0.21 0.02 0.01 0.20 0.00 0.32 0.01 0.34 0.11 0.17 0.41 0.31 0.03 0.21 0.01 0.02 0.34 0.33 0.11
C5 0.02 0.02 0.21 0.42 0.01 0.32 0.00 0.59 0.00 0.01 0.01 0.02 0.50 0.27 0.01 0.21 1.17 1.40 1.77 1.30
C5' 0.12 0.40 0.23 0.03 0.40 0.01 0.59 0.00 0.58 0.25 0.38 0.70 0.13 0.22 0.42 0.03 0.01 0.35 0.40 0.03
C6 0.02 0.01 0.28 0.37 0.01 0.34 0.00 0.58 0.00 0.01 0.01 0.02 0.48 0.22 0.01 0.27 1.09 1.25 1.47 1.13
N1 0.01 0.01 0.04 0.25 0.02 0.11 0.01 0.25 0.01 0.00 0.01 0.02 0.22 0.14 0.02 0.03 0.66 0.87 0.96 0.64
N3 0.03 0.01 0.20 0.40 0.01 0.17 0.01 0.38 0.01 0.01 0.00 0.01 0.27 0.23 0.02 0.18 0.76 1.05 1.25 0.80
O2 0.06 0.01 0.50 0.42 0.02 0.41 0.02 0.70 0.02 0.02 0.01 0.00 0.46 0.35 0.03 0.46 0.74 1.08 0.98 0.82
O2' 0.02 0.25 0.01 0.03 0.37 0.31 0.50 0.13 0.48 0.22 0.27 0.46 0.00 0.07 0.39 0.22 0.34 0.76 0.55 0.46
O3' 0.31 0.22 0.04 0.01 0.26 0.03 0.27 0.22 0.22 0.14 0.23 0.35 0.07 0.00 0.32 0.23 0.33 0.72 0.51 0.41
O4 0.03 0.02 0.08 0.46 0.01 0.21 0.01 0.42 0.01 0.02 0.02 0.03 0.39 0.32 0.00 0.05 1.02 1.31 1.74 1.15
O4' 0.01 0.26 0.03 0.02 0.05 0.01 0.21 0.03 0.27 0.03 0.18 0.46 0.22 0.23 0.05 0.00 0.36 0.53 0.59 0.38
O5' 0.37 0.63 0.42 0.31 0.96 0.02 1.17 0.01 1.09 0.66 0.76 0.74 0.34 0.33 1.02 0.36 0.00 0.02 0.03 0.01
OP1 0.64 0.93 0.79 0.55 1.22 0.34 1.40 0.35 1.25 0.87 1.05 1.08 0.76 0.72 1.31 0.53 0.02 0.00 0.02 0.01
OP2 0.60 0.98 0.55 0.43 1.58 0.33 1.77 0.40 1.47 0.96 1.25 0.98 0.55 0.51 1.74 0.59 0.03 0.02 0.00 0.01
P 0.37 0.64 0.50 0.33 1.05 0.11 1.30 0.03 1.13 0.64 0.80 0.82 0.46 0.41 1.15 0.38 0.01 0.01 0.01 0.00