sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-4105-436
X
>3U5H-8105-836
X
>1VC7-B42-B44
X
>3KNH-A333-A337
X
>3U5F-6420-6424
X
>3U5B-2423-2427
X
</seq>
<hsp>
0 1:0.0975110691744
0 2:0.999999883852
0 3:0.748279712413
0 4:0.904198703015
0 5:0.876973882216
1 2:0.943690736598
1 3:0.713030449611
1 4:0.863814872538
1 5:0.835259125649
2 3:0.455511329255
2 4:0.308758498378
2 5:0.329161449818
3 4:0.218636191171
3 5:0.174027304713
4 5:0.07858553323
</hsp>