ClaRNA

Doublet Group distance statistics: 20313

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Distances from reference structure (by RMSD)

1, 7, 10, 56, 15, 1, 1, 50, 5, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.134, 0.215, 0.296, 0.809 max_d=0.809 avg_d=0.215 std_dev=0.081
N3 B 0, 0.228, 0.334, 0.439, 0.766 max_d=0.766 avg_d=0.334 std_dev=0.106
N1 A 0, 0.116, 0.232, 0.347, 0.514 max_d=0.514 avg_d=0.232 std_dev=0.116
C2 B 0, 0.099, 0.221, 0.342, 0.821 max_d=0.821 avg_d=0.221 std_dev=0.121
C1' B 0, 0.326, 0.463, 0.600, 1.265 max_d=1.265 avg_d=0.463 std_dev=0.137
C6 B 0, 0.210, 0.356, 0.503, 1.256 max_d=1.256 avg_d=0.356 std_dev=0.147
C4 B 0, 0.266, 0.415, 0.564, 1.009 max_d=1.009 avg_d=0.415 std_dev=0.149
C6 A 0, 0.253, 0.409, 0.564, 0.758 max_d=0.758 avg_d=0.409 std_dev=0.156
C5 B 0, 0.283, 0.457, 0.630, 1.421 max_d=1.421 avg_d=0.457 std_dev=0.174
O4' B 0, 0.470, 0.655, 0.840, 1.610 max_d=1.610 avg_d=0.655 std_dev=0.185
O2 B 0, 0.245, 0.436, 0.626, 1.606 max_d=1.606 avg_d=0.436 std_dev=0.191
N4 B 0, 0.426, 0.645, 0.864, 1.574 max_d=1.574 avg_d=0.645 std_dev=0.219
C2 A 0, 0.251, 0.520, 0.789, 0.966 max_d=0.966 avg_d=0.520 std_dev=0.269
C5 A 0, 0.279, 0.612, 0.946, 1.142 max_d=1.142 avg_d=0.612 std_dev=0.334
C4' B 0, 0.520, 0.888, 1.256, 3.241 max_d=3.241 avg_d=0.888 std_dev=0.368
C2' B 0, 0.227, 0.615, 1.002, 3.556 max_d=3.556 avg_d=0.615 std_dev=0.388
N3 A 0, 0.284, 0.675, 1.067, 1.307 max_d=1.307 avg_d=0.675 std_dev=0.391
C4 A 0, 0.201, 0.651, 1.101, 1.363 max_d=1.363 avg_d=0.651 std_dev=0.450
C3' B 0, 0.301, 0.775, 1.248, 4.397 max_d=4.397 avg_d=0.775 std_dev=0.473
C1' A 0, 0.032, 0.538, 1.043, 1.338 max_d=1.338 avg_d=0.538 std_dev=0.505
O2 A 0, 0.369, 0.882, 1.394, 1.707 max_d=1.707 avg_d=0.882 std_dev=0.512
O2' B 0, 0.394, 0.912, 1.431, 4.647 max_d=4.647 avg_d=0.912 std_dev=0.519
C5' B 0, 0.426, 1.110, 1.795, 5.894 max_d=5.894 avg_d=1.110 std_dev=0.685
C2' A 0, 0.177, 0.903, 1.629, 2.193 max_d=2.193 avg_d=0.903 std_dev=0.726
O3' B 0, 0.336, 1.069, 1.803, 6.716 max_d=6.716 avg_d=1.069 std_dev=0.734
N4 A 0, 0.230, 0.998, 1.766, 2.207 max_d=2.207 avg_d=0.998 std_dev=0.768
O5' B 0, 0.248, 1.094, 1.940, 6.544 max_d=6.544 avg_d=1.094 std_dev=0.846
C3' A 0, 0.821, 1.741, 2.661, 2.684 max_d=2.684 avg_d=1.741 std_dev=0.920
O4' A 0, 0.626, 1.622, 2.619, 2.880 max_d=2.880 avg_d=1.622 std_dev=0.997
O2' A 0, 0.281, 1.330, 2.380, 3.085 max_d=3.085 avg_d=1.330 std_dev=1.050
O3' A 0, 1.044, 2.104, 3.163, 3.221 max_d=3.221 avg_d=2.104 std_dev=1.060
P B 0, 0.296, 1.433, 2.569, 9.643 max_d=9.643 avg_d=1.433 std_dev=1.137
OP2 B 0, 0.478, 1.661, 2.844, 10.597 max_d=10.597 avg_d=1.661 std_dev=1.183
C4' A 0, 0.945, 2.148, 3.351, 3.423 max_d=3.423 avg_d=2.148 std_dev=1.203
OP1 B 0, 0.112, 1.583, 3.054, 11.001 max_d=11.001 avg_d=1.583 std_dev=1.471
O5' A 0, 1.535, 3.278, 5.020, 4.764 max_d=4.764 avg_d=3.278 std_dev=1.742
C5' A 0, 1.450, 3.244, 5.038, 4.951 max_d=4.951 avg_d=3.244 std_dev=1.794
P A 0, 1.696, 3.750, 5.804, 5.779 max_d=5.779 avg_d=3.750 std_dev=2.054
OP2 A 0, 1.737, 3.941, 6.146, 6.411 max_d=6.411 avg_d=3.941 std_dev=2.204
OP1 A 0, 1.810, 4.028, 6.247, 6.467 max_d=6.467 avg_d=4.028 std_dev=2.219

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.04 0.01 0.01 0.01 0.01 0.02 0.02 0.31 0.01 0.15 0.36 0.21 0.15
C2 0.01 0.00 0.19 0.18 0.01 0.08 0.01 0.16 0.01 0.01 0.00 0.01 0.00 0.15 0.30 0.18 0.44 0.54 0.75 0.53
C2' 0.00 0.19 0.00 0.00 0.06 0.02 0.10 0.15 0.15 0.03 0.16 0.07 0.30 0.00 0.03 0.03 0.37 0.67 0.47 0.44
C3' 0.01 0.18 0.00 0.00 0.39 0.01 0.47 0.02 0.44 0.23 0.27 0.42 0.13 0.01 0.01 0.02 0.14 0.60 0.16 0.26
C4 0.01 0.01 0.06 0.39 0.00 0.20 0.00 0.34 0.01 0.01 0.00 0.00 0.01 0.39 0.15 0.05 0.70 0.96 1.25 0.97
C4' 0.01 0.08 0.02 0.01 0.20 0.00 0.33 0.00 0.33 0.11 0.08 0.22 0.24 0.29 0.03 0.00 0.01 0.24 0.12 0.07
C5 0.01 0.01 0.10 0.47 0.00 0.33 0.00 0.47 0.00 0.00 0.00 0.01 0.01 0.51 0.27 0.14 0.75 1.06 1.23 1.03
C5' 0.04 0.16 0.15 0.02 0.34 0.00 0.47 0.00 0.43 0.16 0.21 0.38 0.27 0.13 0.19 0.02 0.01 0.13 0.15 0.01
C6 0.01 0.01 0.15 0.44 0.01 0.33 0.00 0.43 0.00 0.00 0.01 0.01 0.01 0.48 0.23 0.19 0.62 0.84 0.87 0.79
N1 0.01 0.01 0.03 0.23 0.01 0.11 0.00 0.16 0.00 0.00 0.01 0.01 0.01 0.23 0.12 0.02 0.39 0.54 0.61 0.48
N3 0.01 0.00 0.16 0.27 0.00 0.08 0.00 0.21 0.01 0.01 0.00 0.01 0.01 0.24 0.22 0.14 0.57 0.73 1.04 0.76
N4 0.01 0.01 0.07 0.42 0.00 0.22 0.01 0.38 0.01 0.01 0.01 0.00 0.01 0.43 0.19 0.06 0.77 1.10 1.45 1.12
O2 0.02 0.00 0.30 0.13 0.01 0.24 0.01 0.27 0.01 0.01 0.01 0.01 0.00 0.27 0.53 0.32 0.36 0.44 0.59 0.37
O2' 0.02 0.15 0.00 0.01 0.39 0.29 0.51 0.13 0.48 0.23 0.24 0.43 0.27 0.00 0.05 0.20 0.25 0.61 0.57 0.40
O3' 0.31 0.30 0.03 0.01 0.15 0.03 0.27 0.19 0.23 0.12 0.22 0.19 0.53 0.05 0.00 0.18 0.18 0.57 0.18 0.24
O4' 0.01 0.18 0.03 0.02 0.05 0.00 0.14 0.02 0.19 0.02 0.14 0.06 0.32 0.20 0.18 0.00 0.17 0.17 0.26 0.17
O5' 0.15 0.44 0.37 0.14 0.70 0.01 0.75 0.01 0.62 0.39 0.57 0.77 0.36 0.25 0.18 0.17 0.00 0.02 0.01 0.00
OP1 0.36 0.54 0.67 0.60 0.96 0.24 1.06 0.13 0.84 0.54 0.73 1.10 0.44 0.61 0.57 0.17 0.02 0.00 0.01 0.01
OP2 0.21 0.75 0.47 0.16 1.25 0.12 1.23 0.15 0.87 0.61 1.04 1.45 0.59 0.57 0.18 0.26 0.01 0.01 0.00 0.01
P 0.15 0.53 0.44 0.26 0.97 0.07 1.03 0.01 0.79 0.48 0.76 1.12 0.37 0.40 0.24 0.17 0.00 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.74 0.53 0.69 0.80 0.51 0.99 0.65 1.25 0.74 0.66 0.49 0.52 0.51 0.72 0.79 0.90 1.33 1.52 1.51 1.52
C2 0.36 0.15 0.38 0.49 0.13 0.59 0.34 0.83 0.42 0.28 0.20 0.32 0.18 0.40 0.52 0.48 0.61 0.78 0.86 0.78
C2' 1.00 0.59 1.01 1.25 0.48 1.41 0.80 1.73 0.97 0.85 0.43 0.35 0.54 1.01 1.30 1.22 1.66 2.01 1.96 1.94
C3' 0.68 0.39 0.66 0.84 0.32 1.00 0.50 1.28 0.63 0.56 0.30 0.32 0.36 0.69 0.89 0.87 1.36 1.66 1.56 1.62
C4 0.74 0.74 0.83 0.87 0.70 0.81 0.76 0.94 0.76 0.73 0.74 0.67 0.78 0.83 0.93 0.72 0.46 0.63 0.74 0.64
C4' 0.92 0.75 0.80 0.85 0.69 1.09 0.76 1.29 0.86 0.84 0.71 0.68 0.76 0.87 0.81 1.08 1.55 1.72 1.56 1.72
C5 0.54 0.55 0.64 0.72 0.51 0.70 0.58 0.91 0.59 0.53 0.57 0.52 0.60 0.63 0.78 0.57 0.64 0.90 0.97 0.90
C5' 1.00 0.82 0.84 0.86 0.71 1.13 0.80 1.31 0.91 0.90 0.74 0.65 0.83 0.93 0.81 1.18 1.59 1.72 1.51 1.73
C6 0.40 0.23 0.44 0.60 0.21 0.69 0.41 0.98 0.48 0.34 0.25 0.26 0.26 0.43 0.64 0.55 0.89 1.17 1.19 1.15
N1 0.41 0.16 0.40 0.55 0.16 0.69 0.38 0.97 0.47 0.33 0.18 0.28 0.16 0.42 0.57 0.58 0.93 1.14 1.18 1.14
N3 0.64 0.55 0.70 0.77 0.52 0.76 0.67 0.90 0.69 0.62 0.53 0.46 0.57 0.70 0.81 0.67 0.44 0.58 0.68 0.58
N4 1.06 1.11 1.16 1.16 1.04 1.05 1.02 1.08 1.02 1.05 1.11 1.02 1.17 1.18 1.22 0.98 0.49 0.56 0.66 0.57
O2 0.34 0.30 0.33 0.40 0.41 0.55 0.30 0.80 0.36 0.28 0.42 0.67 0.32 0.39 0.41 0.46 0.63 0.75 0.84 0.75
O2' 1.32 0.83 1.29 1.56 0.68 1.81 1.04 2.18 1.27 1.14 0.63 0.53 0.77 1.30 1.58 1.62 2.14 2.55 2.48 2.48
O3' 0.39 0.35 0.30 0.48 0.47 0.69 0.39 0.99 0.39 0.34 0.45 0.65 0.34 0.34 0.53 0.60 1.25 1.57 1.44 1.53
O4' 0.96 0.85 0.86 0.87 0.80 1.06 0.84 1.23 0.92 0.90 0.82 0.79 0.86 0.92 0.81 1.08 1.48 1.57 1.47 1.60
O5' 0.92 0.69 0.80 0.88 0.59 1.10 0.76 1.30 0.87 0.82 0.58 0.46 0.67 0.86 0.87 1.10 1.47 1.62 1.47 1.63
OP1 0.91 0.67 0.79 0.84 0.59 1.08 0.75 1.26 0.86 0.81 0.57 0.46 0.65 0.85 0.82 1.10 1.58 1.75 1.57 1.76
OP2 0.97 0.78 0.96 1.06 0.75 1.15 0.90 1.33 0.96 0.90 0.71 0.66 0.74 0.97 1.11 1.10 1.39 1.56 1.43 1.55
P 0.85 0.61 0.77 0.85 0.53 1.04 0.70 1.22 0.81 0.75 0.50 0.39 0.58 0.82 0.86 1.03 1.41 1.58 1.40 1.57

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.01 0.01 0.01 0.01 0.03 0.01 0.01 0.02 0.01 0.03 0.02 0.02 0.00 0.17 0.22 0.13 0.14
C2 0.02 0.00 0.08 0.11 0.01 0.14 0.01 0.24 0.01 0.01 0.00 0.01 0.00 0.10 0.11 0.12 0.41 0.44 0.42 0.42
C2' 0.00 0.08 0.00 0.00 0.06 0.02 0.08 0.03 0.08 0.03 0.07 0.07 0.13 0.00 0.02 0.01 0.27 0.39 0.18 0.26
C3' 0.01 0.11 0.00 0.00 0.10 0.01 0.08 0.03 0.08 0.05 0.12 0.11 0.14 0.02 0.00 0.02 0.38 0.51 0.19 0.36
C4 0.01 0.01 0.06 0.10 0.00 0.07 0.00 0.17 0.00 0.01 0.00 0.00 0.01 0.06 0.12 0.02 0.53 0.51 0.46 0.49
C4' 0.01 0.14 0.02 0.01 0.07 0.00 0.09 0.01 0.11 0.04 0.13 0.08 0.22 0.06 0.03 0.01 0.02 0.17 0.22 0.03
C5 0.01 0.01 0.08 0.08 0.00 0.09 0.00 0.18 0.00 0.00 0.00 0.01 0.01 0.08 0.10 0.08 0.60 0.55 0.48 0.54
C5' 0.03 0.24 0.03 0.03 0.17 0.01 0.18 0.00 0.19 0.09 0.24 0.19 0.37 0.07 0.05 0.01 0.01 0.22 0.38 0.02
C6 0.01 0.01 0.08 0.08 0.00 0.11 0.00 0.19 0.00 0.00 0.01 0.01 0.01 0.09 0.09 0.11 0.55 0.49 0.37 0.46
N1 0.01 0.01 0.03 0.05 0.01 0.04 0.00 0.09 0.00 0.00 0.01 0.01 0.01 0.03 0.06 0.01 0.36 0.35 0.23 0.29
N3 0.02 0.00 0.07 0.12 0.00 0.13 0.00 0.24 0.01 0.01 0.00 0.01 0.01 0.09 0.13 0.09 0.48 0.49 0.48 0.48
N4 0.01 0.01 0.07 0.11 0.00 0.08 0.01 0.19 0.01 0.01 0.01 0.00 0.01 0.07 0.15 0.03 0.57 0.55 0.54 0.55
O2 0.03 0.00 0.13 0.14 0.01 0.22 0.01 0.37 0.01 0.01 0.01 0.01 0.00 0.18 0.14 0.21 0.47 0.55 0.58 0.56
O2' 0.02 0.10 0.00 0.02 0.06 0.06 0.08 0.07 0.09 0.03 0.09 0.07 0.18 0.00 0.04 0.04 0.08 0.24 0.10 0.10
O3' 0.02 0.11 0.02 0.00 0.12 0.03 0.10 0.05 0.09 0.06 0.13 0.15 0.14 0.04 0.00 0.02 0.31 0.56 0.22 0.36
O4' 0.00 0.12 0.01 0.02 0.02 0.01 0.08 0.01 0.11 0.01 0.09 0.03 0.21 0.04 0.02 0.00 0.06 0.09 0.26 0.11
O5' 0.17 0.41 0.27 0.38 0.53 0.02 0.60 0.01 0.55 0.36 0.48 0.57 0.47 0.08 0.31 0.06 0.00 0.02 0.02 0.01
OP1 0.22 0.44 0.39 0.51 0.51 0.17 0.55 0.22 0.49 0.35 0.49 0.55 0.55 0.24 0.56 0.09 0.02 0.00 0.01 0.01
OP2 0.13 0.42 0.18 0.19 0.46 0.22 0.48 0.38 0.37 0.23 0.48 0.54 0.58 0.10 0.22 0.26 0.02 0.01 0.00 0.01
P 0.14 0.42 0.26 0.36 0.49 0.03 0.54 0.02 0.46 0.29 0.48 0.55 0.56 0.10 0.36 0.11 0.01 0.01 0.01 0.00