ClaRNA

Doublet Group info: classifier/stacking/>>/AC

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: stacking
Desc: >>/AC
Sub-clusters:
count: 28     show
>>/AC/sub-001
>>/AC/sub-002
>>/AC/sub-003
>>/AC/sub-004
>>/AC/sub-005
>>/AC/sub-006
>>/AC/sub-007
>>/AC/sub-008
>>/AC/sub-009
>>/AC/sub-010
>>/AC/sub-011
>>/AC/sub-012
>>/AC/sub-013
>>/AC/sub-014
>>/AC/sub-015
>>/AC/sub-016
>>/AC/sub-017
>>/AC/sub-018
>>/AC/sub-019
>>/AC/sub-020
>>/AC/sub-021
>>/AC/sub-022
>>/AC/sub-023
>>/AC/sub-024
>>/AC/sub-025
>>/AC/sub-026
>>/AC/sub-027
>>/AC/sub-028
Members:
count: 12230
download members
2VQE:A1215:A1274
1XMQ:A665:A679
1YHQ:01651:0829
2OTJ:01651:0829
1YJW:01651:0829
1Y39:C37:C28
2DR7:B16:B19
1N8R:A1687:A1689
1YHQ:01687:01689
1XMQ:A379:A380
1FFK:01640:01642
1ZDH:R5:R7
3CC2:01531:01532
3CD6:02651:02030
1S72:02651:02030
3CPW:02651:02030
2IZM:S5:S7
3R8N:A369:A370
3FTE:D12:D13
1S72:0654:0655
1HR2:B105:B106
1VQ9:089:090
1Q86:A1166:A1167
2QA4:01165:01166
1Q81:A2514:A2515
3R8T:A734:A735
3OHZ:A474:A475
3U5H:5375:5376
3KNK:A1697:A1698
3U5D:11641:11642
1KD4:A4:A5
1QVG:02514:02515
3CC4:02514:02515
3OGE:A760:A761
3R8T:A339:A340
3R8S:A1648:A1649
3OHK:A743:A744
1K9M:A1787:A1788
2UUB:A881:A882
3OHK:A474:A475
3KNK:A2562:A2563
3OH7:A474:A475
1YIT:0991:0992
3G6E:0991:0992
3CCL:01600:01601
2UUB:A78:A79
3OH5:A2572:A2573
1VQM:01435:01436
3OHJ:A389:A390
1YIT:02533:02534
3U5B:21552:21553
3OHZ:A857:A858
1NJI:A2533:A2534
3CCU:02533:02534
1Q82:A1691:A1692
2VQE:A1164:A1165
3F1G:A881:A882
3F1H:A504:A505
2OTJ:02090:02091
3CCJ:02084:02085
2J03:A1596:A1597
2J01:A1596:A1597
1VQM:02090:02091
3CC4:01691:01692
2ZJR:X1414:X1416
1VQO:02350:02351
3GS8:D12:D13
3U5H:5352:5353
3G78:A138:A139
3CCS:979:980
3OHJ:A2039:A2040
1VQ9:01159:01160
3R8S:A2593:A2594
3AEV:C5:C6
3CCV:02084:02085
3CC7:979:980
1VQ9:01140:01141
1S72:01159:01160
1YI2:979:980
1NJI:A2350:A2351
2QEX:02350:02351
3G6E:01773:01774
1QVG:979:980
3OHK:A243:A244
3CPW:02350:02351
1VQO:01453:01454
1VQ4:979:980
1ET4:E3:E4
3OI0:A457:A458
2J00:A1164:A1165
1YHQ:02558:02559
3R8S:A2628:A2629
3G6E:02558:02559
1QVG:02558:02559
1VQ6:02542:02543
3OHD:A457:A458
3OH7:A2430:A2431
2J00:A589:A590
1FG0:A341:A342
1VQL:02682:02683
3F1E:A437:A438
3CCU:02640:02641
3OHY:A437:A438
3G6E:0585:0586
1YZ9:D3:D4
2UUA:A1167:A1168
3OHZ:A1993:A1994
2UUA:A1405:A1406
1VQ9:02682:02683
1M90:A585:A586
3F1E:A48:A49
3U5H:53063:53064
3CCL:01245:01248
3CCV:0557:0558
1QVG:01239:01240
3G71:02542:02543
3U5F:6863:6864
2OTL:01695:01696
3F1G:Z38:Z39
3F1E:Z38:Z39
2OTJ:0281:0282
3F1F:A2649:A2650
3CCJ:01245:01248
3G6E:02640:02641
3F1F:A1790:A1791
3I56:01695:01696
2QA4:02464:02465
3U5D:1516:1517
1FFK:01678:01679
3CMA:01801:01802
2QEX:0351:0352
3CCL:01695:01696
3F1G:A1079:A1080
1VQ5:0916:0917
1JJ2:02640:02641
3G6E:0281:0282
3CCE:01435:01436
1NJI:A149:A150
3I56:01509:01510
3F1G:Z73:Z74
1M90:A149:A150
1Q86:A477:A478
1VQ5:0477:0478
1VQM:0182:0183
3OGE:A48:A49
3CCS:01435:01436
1Q81:A2465:A2466
3CD6:02605:02606
3CCU:01239:01240
3U5H:8108:8109
3CD6:01386:01387
3CD6:01773:01774
1S72:01801:01802
3OH5:A2252:A2254
3U5D:11235:11236
1VQO:0281:0282
1FJG:A311:A312
1YJW:0215:0216
2QA4:0832:0833
3KNH:A1215:A1216
1NJI:A916:A917
3CPW:01140:01141
3R8T:A2474:A2475
3CCV:01509:01510
3OHJ:A1712:A1713
3Q3Z:A67:A68
3G9C:P80:P81
1N32:A1472:A1473
1YHQ:0581:0582
2QA4:944:945
1VQ6:02064:02065
2QA4:01351:01352
1VQ4:02064:02065
3CCS:0585:0586
1Q86:A328:A329
3CC7:0222:0223
3CCV:0204:0205
3CCU:0204:0205
3CCE:0745:0746
3CCE:0215:0216
1NJI:A833:A834
3SKW:A56:A57
3OHY:A311:A312
2J01:A2556:A2557
1YJ9:01839:01840
1VQP:0585:0586
3CCS:01201:01202
3HHN:C12:C13
1FFK:01589:01590
1VQK:0204:0205
1JJ2:01435:01436
3F1H:A1954:A1955
2ZJR:X92:X93
3OH7:A1712:A1713
1VQ6:0182:0183
3I56:01870:01871
2QA4:0243:0244
3CCL:0204:0205
1XMQ:A966:A967
1RPU:D3:D4
1FFK:0214:0215
3R8O:A967:A968
2J02:A461:A462
3CCS:01220:01221
1K9M:A1201:A1202
3R8N:A1532:A1533
1K9M:A2605:A2606
1YI2:0182:0183
3CC2:0461:0462
1VQN:0204:0205
3B4C:B63:B64
1Q81:A328:A329
1YHQ:0745:0746
1M90:A2249:A2250
1Q86:A1509:A1510
3I56:01900:01901
3CPW:02605:02606
1VQ4:0916:0917
1VQ7:0266:0267
1FFK:02557:02558
3U5B:2987:2988
3R8T:A2165:A2166
1YHQ:02236:02237
3MUM:R4:R5
3CME:0743:0744
3KNH:A580:A581
3CCJ:01870:01871
3CC7:0430:0431
1Q86:A1827:A1828
1Y27:X26:X27
1YI2:0335:0336
3G9C:S120:S121
3R8S:A1991:A1992
3C44:A15:A16
1VQ5:0461:0462
2OE8:B4:B5
1VQ6:01870:01871
3G71:0430:0431
3I56:01868:01869
1YJ9:02001:02002
3CC2:0743:0744
3OVS:D25:D26
2J01:A214:A215
1Q81:A1976:A1977
3R8O:A792:A793
3U5H:52230:52231
1YIT:01214:01215
3OI1:A2077:A2078
3CCU:02236:02237
2QA4:0342:0343
3OI1:A832:A833
1Q86:A2236:A2237
3CCS:0222:0223
1Q86:A1211:A1212
3CC4:0608:0609
3G71:01352:01353
1M5O:B23:B24
3G6E:0760:0761
2QEX:0608:0609
3I56:0222:0223
3CCL:0760:0761
2OTL:01201:01202
3G6E:0674:0675
301D:B23:B24
1VQ9:02605:02606
1QVG:01539:01540
1VQ9:0335:0336
3GER:A2:A3
3R8T:A1952:A1953
3I56:01539:01540
3CC4:01539:01540
2PN4:A10:A11
1TFW:F10:F11
1VQ4:0335:0336
1VQP:01430:01431
1ZX7:D8:D9
1VQ5:01885:01886
3CCR:0674:0675
1FJG:A531:A532
3CCU:0175:0176
1VQP:0175:0176
2UUB:A1472:A1473
3CCR:0537:0538
3CPW:02494:02495
3G8T:P120:P121
3R8N:A1406:A1407
3U5D:12917:12918
1QU2:T63:T64
3CC7:01870:01871
1VQ7:0767:0768
1M5P:B68:B69
1VQ7:02659:02660
3KNH:A1291:A1292
3CD6:0430:0431
3RW6:H7:H8
3CD6:092:093
1Q82:A348:A349
2R7X:X4:X5
1YIT:01985:01986
1YJN:0528:0529
3CC4:933:934
1XMQ:A941:A942
1VQN:02494:02495
1T0E:C13:C14
1YHQ:933:934
3CXC:0882:0883
3CC4:01870:01871
2DR2:B29:B30
1Q81:A2271:A2272
1VQ7:0743:0744
3OI0:A633:A634
1VQ8:0674:0675
1NJI:A767:A768
2JLU:D2:D3
1VQP:01352:01353
1FFK:9119:9120
1L8V:B33:B34
3KNK:A1223:A1224
1VQ4:01810:01811
1VQN:01211:01212
1S72:01539:01540
1YIJ:0348:0349
2UUA:A28:A29
1S72:0608:0609
1VQ5:0411:0412
1SJ3:R71:R72
3CCS:0608:0609
3OL7:K13:K14
1Y73:A15:A16
1K9M:A1352:A1353
3CC7:02659:02660
2J00:A1385:A1386
3CMA:01441:01442
1YJW:0608:0609
1YIJ:02216:02217
1VQ9:944:945
2H0Z:B87:B88
3CC7:02216:02217
1VQ4:01985:01986
3I56:02494:02495
1VQL:01570:01571
3OL8:K13:K14
3R8T:A18:A19
2FCX:A15:A16
1VQK:0243:0244
1VQ4:02545:02546
1VQ8:933:934
2UUA:A260:A261
3OHJ:A2641:A2642
3SUH:X56:X57
1YIT:02545:02546
2J03:A1714:A1715
2J01:A1578:A1579
2QA4:01618:01619
3CCU:01424:01425
3CC7:0537:0538
3OHZ:A1578:A1579
3OH5:A49:A50
2V7R:B3:B4
2GDI:X2:X3
3OH7:A2077:A2078
1S72:02358:02359
1YJW:01441:01442
1VQM:0799:0800
3CCM:933:934
3R8S:A2822:A2823
1VQP:02659:02660
1K9M:A1441:A1442
1M90:A2126:A2127
2ZJR:X1825:X1826
2OTL:01570:01571
2QEX:01358:01359
1VQN:0537:0538
2B8S:B15:B16
1N8R:A2523:A2524
2BCZ:C11:C12
3F1F:A437:A438
3CMA:0981:0982
3F1H:A1972:A1973
2VQF:A442:A443
1YI2:01619:01620
3CC4:01976:01977
3CCR:02523:02524
2J03:A2498:A2499
1JJ2:01424:01425
1VQ9:02695:02696
2NZ4:S120:S121
3OI1:A1714:A1715
2ZJR:X366:X367
3F1F:A143:A144
3CCM:0767:0768
3F1F:A1336:A1337
3CCR:02006:02007
1YJ9:01233:01234
1K9M:A342:A343
3KNK:A1526:A1527
1QVG:02106:02107
1VQ7:946:947
1Q86:A2271:A2272
1JJ2:01233:01234
1K9M:A2126:A2127
1YJW:01026:01027
1YIJ:02523:02524
1L3Z:B4:B5
1VQN:0550:0551
3CC4:02523:02524
1S72:02749:02750
3G71:02126:02127
3CCL:02695:02696
1YI2:01026:01027
2BH2:C28:C29
3CC7:02006:02007
1Q81:A2749:A2750
3CCR:01026:01027
1QTQ:B23:B24
2QEX:946:947
1Q81:A1619:A1620
1M90:A342:A343
3DJ0:A143:A144
3SKI:A28:A29
3R8S:A562:A563
1VQM:0342:0343
1YZ9:C3:C4
3CCQ:01026:01027
2I91:E4:E5
1S72:946:947
2OTL:0981:0982
3CCE:01233:01234
2PN4:C7:C8
2HOL:A34:A35
1YIJ:02031:02032
3DVV:A15:A16
1YIJ:01230:01231
1NJI:A1233:A1234
1K8A:A977:A978
3NPQ:A2:A3
3CC7:0140:0141
3F1E:A895:A896
1FFK:0976:0977
1YHQ:01230:01231
1M5P:B25:B26
2EEU:A25:A26
2QEX:02031:02032
3CC7:01619:01620
1KD1:A977:A978
3DIX:A143:A144
3CPW:0290:0291
3CCL:02031:02032
3OLB:K6:K7
1Y6T:B13:B14
3CCU:01233:01234
1S03:B13:B14
2OTJ:02338:02339
1VQP:0550:0551
3OGE:A123:A124
1K9M:A550:A551
1VQK:01233:01234
1VQ6:01695:01696
1VQN:0743:0744
3R8O:A433:A434
3CCU:01636:01637
2QEX:01801:01802
3R8S:A94:A95
1YJW:02682:02683
1VQO:02106:02107
3G6E:0290:0291
3EGZ:B55:B56
1YIJ:01965:01966
1VQK:0465:0466
1VQ7:0465:0466
3U5D:12152:12153
1RPU:D16:D17
1YI2:0550:0551
2VQF:A694:A695
3OLA:K6:K7
1VBY:B53:B54
1VQ8:02031:02032
1VQ8:0140:0141
3CC4:0427:0428
3CCR:0465:0466
1VQP:0290:0291
1VQM:02031:02032
3LWP:D5:D6
3CCL:0465:0466
2H0X:A9:A10
3R8S:A2675:A2676
1N32:A864:A865
2VQE:A303:A304
299D:B23:B24
1S72:01570:01571
1N8R:A1230:A1231
3CCL:01441:01442
1YJ9:01965:01966
2ZI0:C2:C3
2UXC:A633:A634
1VQP:02006:02007
1YJ9:02243:02244
2ZJR:X549:X550
1VQN:01358:01359
Closest classifer groups: show all      show selected
Group Members RMSD
stacking/>> 13165 0.155
stacking/<< 6511 0.158
stacking/>< 642 0.288
base-ribose/W_5BR 214 0.869
base-ribose/W_4BR 362 1.065
base-ribose/W_3BR 156 1.416
base-phosphate/H_8BPh 1074 1.425
base-phosphate/H_0BPh 39 1.508
base-phosphate/H_9BPh 376 1.709
base-ribose/H_0BR 590 1.961

Extra

PDB:download
Reference image (generated by PyMOL):
pymol image
show in jmol
All members (generated by PyMOL):
pymol image
show in jmol