ClaRNA

Doublet Group info: classifier/stacking/></CU

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: stacking
Desc: ></CU
Sub-clusters:
count: 17     show
></CU/sub-001
></CU/sub-002
></CU/sub-003
></CU/sub-004
></CU/sub-005
></CU/sub-006
></CU/sub-007
></CU/sub-008
></CU/sub-009
></CU/sub-010
></CU/sub-011
></CU/sub-012
></CU/sub-013
></CU/sub-014
></CU/sub-015
></CU/sub-016
></CU/sub-017
Members:
count: 511
download members
2GDI:X17:X18
1VQL:01828:01829
1YIT:01828:01829
1HR2:B64:B65
1YJW:01828:01829
3OH5:A1858:A1859
3R8S:A1935:A1936
1YJW:02078:02079
2QEX:01828:01829
1YJ9:02078:02079
2J01:A1912:A1911
2J03:A1912:A1911
3OH7:A1858:A1859
3G71:02078:02079
3CPW:01828:01829
1FFK:01781:01782
2J01:A1858:A1859
1VQP:01828:01829
1VQM:01828:01829
3CCM:01828:01829
2J03:A1858:A1859
1YJN:02078:02079
3CCS:02078:02079
3U5D:12092:12093
3CMA:01828:01829
3CCQ:01828:01829
3CCQ:02078:02079
1VQK:01828:01829
3G71:01828:01829
3G6E:02078:02079
1S72:01828:01829
1K8A:A1828:A1829
1Q82:A1828:A1829
1YJN:01828:01829
2QA4:01827:01828
1L8V:B63:B64
1VQ4:01828:01829
1JJ2:01828:01829
3CXC:02078:02079
1VQN:01828:01829
1YIJ:01828:01829
1VQ8:01828:01829
1Q81:A2078:A2079
3CCR:01828:01829
1L8V:A63:A64
1YI2:01828:01829
3CC4:02078:02079
1K8A:A2078:A2079
1VQO:01828:01829
3CCV:02078:02079
1FG0:A69:A70
2QEX:01929:01930
3CC2:01828:01829
1VQ7:01828:01829
3U5B:21189:21188
1JJ2:02078:02079
1N8R:A1929:A1930
3CXC:01828:01829
1N8R:A2078:A2079
1S72:02078:02079
3U5B:21266:21265
1KD1:A1828:A1829
3CMA:01929:01930
1QVG:01929:01930
1QVG:01828:01829
1VQ5:01828:01829
2OTJ:02078:02079
1HR2:A63:A64
3CCS:01828:01829
2OTJ:01828:01829
3U5D:1875:1876
3CCL:02078:02079
1NJI:A1828:A1829
3R8O:A505:A506
3CCV:01828:01829
1GID:A63:A64
1N8R:A1828:A1829
2OTL:02078:02079
1YHQ:01828:01829
1VQ4:02078:02079
2OTL:01828:01829
1NJI:A2078:A2079
3G6E:01828:01829
3CPW:01929:01930
1VQ6:01828:01829
1YIJ:02078:02079
1M90:A1828:A1829
1Q82:A2232:A2231
1KD1:A2078:A2079
1VQ9:01828:01829
3CC2:02078:02079
3CC7:02078:02079
1VQN:01929:01930
1YI2:02078:02079
1VQ6:02078:02079
1FFK:02031:02032
3CD6:02078:02079
1Q86:A2078:A2079
2QEX:02078:02079
1VQ9:02078:02079
1YIT:02078:02079
3U5H:5881:5882
3CC4:01828:01829
1VQN:02078:02079
3CCR:02232:02231
3CPW:02078:02079
1QVG:02078:02079
1GID:B63:B64
1K9M:A2078:A2079
1YJ9:01828:01829
1Q82:A2078:A2079
3CCE:02078:02079
1Q82:A1929:A1930
1K8A:A1929:A1930
1VQ8:02078:02079
1K9M:A1828:A1829
3CME:01929:01930
2OTL:01929:01930
1Q86:A1828:A1829
3I56:01929:01930
1K8A:A2232:A2231
3CCU:01828:01829
1M90:A2078:A2079
3CME:02078:02079
1VQK:02078:02079
1YJN:01929:01930
3CCU:02078:02079
3CCS:02232:02231
3I56:01828:01829
1NJI:A1929:A1930
1K9M:A2232:A2231
1YHQ:02078:02079
1VQ5:02078:02079
1K9M:A1929:A1930
3CC7:01929:01930
1KD1:A1929:A1930
1FG0:A223:A222
1VQP:02078:02079
3CME:02232:02231
1VQM:01929:01930
1M90:A1929:A1930
3R8T:A1934:A1935
1S72:01929:01930
3CCU:01929:01930
3CCL:01828:01829
3CCS:01929:01930
1JJ2:01929:01930
1KD1:A2232:A2231
2R8S:R64:R65
3CCM:01929:01930
3CXC:02232:02231
1VQO:02078:02079
1VQ5:01929:01930
1VQL:01929:01930
1VQP:01929:01930
3CCJ:02232:02231
1YJW:01929:01930
1Q81:A2232:A2231
1YIJ:01929:01930
3CCM:02078:02079
3CCQ:01929:01930
1YJW:02232:02231
1NJI:A2232:A2231
1N8R:A2232:A2231
1VQ4:01929:01930
3CCE:01929:01930
1M90:A2232:A2231
1VQL:02078:02079
3CCM:02232:02231
1VQ7:02078:02079
3CMA:02078:02079
2OTJ:02232:02231
1Q81:A1929:A1930
1VQ6:01929:01930
3CCL:01929:01930
1YIT:01929:01930
1VQM:02078:02079
3G71:02232:02231
3CCR:01929:01930
1VQ9:01929:01930
3CXC:01929:01930
1VQO:01929:01930
3CCQ:02232:02231
1Q81:A1828:A1829
1YHQ:01929:01930
1VQK:01929:01930
2OTJ:01929:01930
1QVG:02232:02231
1Q86:A1929:A1930
1VQ7:01929:01930
2QEX:02232:02231
1YJ9:01929:01930
1FFK:02185:02184
3I56:02232:02231
1YIJ:02232:02231
1VQM:02232:02231
3CC2:01929:01930
3G71:01929:01930
1FFK:01882:01883
3CCV:01929:01930
3CC7:02232:02231
1Q86:A2232:A2231
3CCV:02232:02231
3CC4:01929:01930
1YI2:01929:01930
3G6E:01929:01930
1VQL:02232:02231
3CMA:02232:02231
1YJN:02232:02231
1VQ8:02232:02231
1VQO:02232:02231
1VQN:02232:02231
1VQP:02232:02231
1VQK:02232:02231
3CD6:01929:01930
1VQ4:02232:02231
1VQ8:01929:01930
3CD6:02232:02231
1YIT:02232:02231
1YHQ:02232:02231
3CPW:02232:02231
1VQ5:02232:02231
1S72:02232:02231
1VQ7:02232:02231
1VQ9:02232:02231
2OTL:02232:02231
1YJ9:02232:02231
3CCE:02232:02231
1JJ2:02232:02231
3CC4:02232:02231
3G6E:02232:02231
1VQ6:02232:02231
3CCL:02232:02231
3CCU:02232:02231
3U5H:53141:53070
3U5D:13140:13069
2J01:A854:A930
3OHK:A854:A930
3OHJ:A854:A930
3OI1:A854:A930
3OHZ:A854:A930
3R8S:A543:A544
3U5D:12368:12369
1F7V:B12:B7
3U5B:2982:2981
1F7U:B12:B7
1EHZ:A12:A7
3U5F:6994:6993
1YFG:A12:A7
3R8T:A2673:A2716
3F1G:Z12:Z7
3F1E:Z12:Z7
3R8S:A2674:A2717
3R8O:A370:A385
1N32:A362:A377
2CSX:C12:C7
2ZJR:X1732:X1783
3OXB:A4:A3
2QA4:02333:02332
2OTL:02334:02333
3CCR:02334:02333
1FFK:0227:0257
3R8N:A370:A385
1Q81:A2334:A2333
2J00:A362:A377
2J02:A362:A377
3CCQ:02334:02333
3F1E:A362:A377
1VQO:02334:02333
3CCJ:02334:02333
3U5H:5873:5869
3CPW:02334:02333
1VQP:02334:02333
3CC7:02334:02333
3CCL:02334:02333
3CCS:02334:02333
2QEX:02334:02333
3CC2:02334:02333
1S72:02334:02333
1KD1:A2334:A2333
3CXC:02334:02333
3CCM:02334:02333
1JJ2:02334:02333
1VQ9:01852:01897
1K9M:A2334:A2333
1K8A:A2334:A2333
1VQ9:02334:02333
3CCU:02334:02333
1VQK:02334:02333
1NJI:A2334:A2333
2OTJ:02334:02333
3CCE:02334:02333
1VQ8:02334:02333
3I56:01852:01897
3I56:02334:02333
1Q86:A2334:A2333
3CCS:01852:01897
3CMA:02334:02333
1QVG:02334:02333
1YHQ:02334:02333
1M90:A2334:A2333
1VQL:02334:02333
1YJ9:02334:02333
1VQ4:02334:02333
3CCR:01852:01897
1VQ7:02334:02333
2QA4:01851:01896
3CC4:01852:01897
3G6E:01852:01897
1Q82:A2334:A2333
1YJW:02334:02333
1VQ6:02334:02333
1VQ5:02334:02333
3CCV:02334:02333
3CD6:02334:02333
3CC4:02334:02333
1N8R:A2334:A2333
1YIJ:02334:02333
3CPW:01852:01897
3G6E:02334:02333
1VQN:01852:01897
1YJN:02334:02333
3CD6:01852:01897
3CME:02334:02333
1YIT:02334:02333
3CME:01852:01897
1Q82:A1852:A1897
1YI2:02334:02333
2QEX:0228:0258
3G71:02334:02333
3CMA:01852:01897
1YI2:01852:01897
1QVG:01852:01897
3CPW:0228:0258
2OTL:01852:01897
1Q82:A228:A258
1FFK:01805:01850
3CCU:01852:01897
1N8R:A1852:A1897
1VQN:02334:02333
3CC7:01852:01897
3OHK:A1763:A1814
1K9M:A228:A258
1VQ4:01852:01897
1Q81:A1852:A1897
3OHJ:A1763:A1814
3CCR:0228:0258
1YJW:0228:0258
3I56:0228:0258
3G71:01852:01897
1K8A:A1852:A1897
1YIT:01852:01897
3CC2:01852:01897
3CC7:0228:0258
1VQ6:01852:01897
3CCL:0228:0258
1VQP:01852:01897
1YHQ:01852:01897
1VQO:01852:01897
3CCE:01852:01897
1YJN:01852:01897
3CCU:0228:0258
1VQ5:01852:01897
1K8A:A228:A258
3CCM:01852:01897
1VQK:01852:01897
1YIJ:01852:01897
3OH5:A1763:A1814
1NJI:A1852:A1897
3G6E:0228:0258
1Q86:A1852:A1897
1YJN:0228:0258
2J03:A1763:A1814
3CCV:0228:0258
1VQL:01852:01897
2OTJ:01852:01897
1JJ2:01852:01897
1YIJ:0228:0258
3CCQ:01852:01897
3CCV:01852:01897
3CXC:0228:0258
3CXC:01852:01897
1YJ9:01852:01897
3OH7:A1763:A1814
1VQL:0228:0258
1VQ9:0228:0258
2J01:A1763:A1814
1VQ8:01852:01897
1N8R:A228:A258
1VQK:0228:0258
1S72:01852:01897
3CCL:01852:01897
1YI2:0228:0258
1VQO:0228:0258
2OTJ:0228:0258
1QVG:0228:0258
1Q86:A228:A258
1KD1:A228:A258
1VQM:01852:01897
1YJ9:0228:0258
2OTL:0228:0258
2QEX:01852:01897
1M90:A1852:A1897
3CD6:0228:0258
3CMA:0228:0258
1JJ2:0228:0258
1KD1:A1852:A1897
3CCS:0228:0258
1M90:A228:A258
3R8N:A1198:A1050
1VQ7:0228:0258
3OHZ:A1763:A1814
1S72:0228:0258
3CCE:0228:0258
1VQ6:0228:0258
1VQP:0228:0258
1VQ4:0228:0258
1YHQ:0228:0258
1FJG:A1176:A1029
3OI1:A1763:A1814
1Q81:A228:A258
1VQN:0228:0258
3CC2:0228:0258
3CCQ:0228:0258
1VQ5:0228:0258
1NJI:A228:A258
3CME:0228:0258
2UUB:A1176:A1029
1VQM:0228:0258
3CC4:0228:0258
1YJW:01852:01897
3G71:0228:0258
3CCM:0228:0258
3U5D:12004:12048
1VQ8:0228:0258
3U5H:52008:52052
3F1H:A1841:A1892
3F1F:A1841:A1892
3CCJ:0228:0258
3R8T:A1831:A1890
2J00:A1176:A1029
3KNI:A1762:A1813
3OH7:A400:A398
3OH5:A400:A398
3F1H:A407:A405
3OHK:A400:A398
3F1F:A407:A405
3OHJ:A400:A398
3OI1:A400:A398
3KNK:A400:A398
2J01:A400:A398
3KNI:A400:A398
3OHZ:A400:A398
2J03:A400:A398
2ZJR:X319:X317
3R8S:A2084:A2085
3U5B:2913:2914
3U5H:53120:53121
3R8T:A2083:A2084
2ZZM:B16:B17
3U5D:13119:13120
3CCU:02323:02376
3F1G:Y16:Y17
3F1E:Y16:Y17
3DS7:A34:A33
3R8S:A1989:A1988
1J1U:B16:B17
3R8T:A1988:A1987
3OHK:A1912:A1911
3OHJ:A1912:A1911
3KNK:A1911:A1910
3OI1:A1912:A1911
3OHZ:A1912:A1911
3U5F:6925:6926
3OH7:A1912:A1911
3KNI:A1911:A1910
3KNI:A1857:A1858
3OH5:A1912:A1911
3I56:02078:02079
3CCR:02078:02079
3R8N:A505:A506
2GDI:Y17:Y18
3CCJ:01828:01829
2ZJR:X1861:X1860
3F1H:A1936:A1937
3U5H:52096:52097
3F1F:A1936:A1937
3OI1:A1858:A1859
3CCE:01828:01829
3CCJ:01929:01930
3OHZ:A1858:A1859
3OHJ:A1858:A1859
2QA4:02231:02230
3F1F:A1990:A1989
3OHK:A1858:A1859
3CCJ:02078:02079
3CME:01828:01829
2QA4:02077:02078
3U5F:61278:61277
3F1H:A1990:A1989
Closest classifer groups: show all      show selected
Group Members RMSD
stacking/>< 511 0.000
stacking/<< 2862 0.189
stacking/>> 2466 0.190
base-phosphate/H_0BPh 39 0.430
base-ribose/W_5BR 214 0.722
base-ribose/W_6BR 214 1.262
base-phosphate/H_9BPh 376 1.689
base-ribose/W_4BR 362 1.701
base-ribose/W_3BR 156 1.814
base-phosphate/W_5BPh 855 1.858

Extra

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Reference image (generated by PyMOL):
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All members (generated by PyMOL):
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