ClaRNA

Doublet Group distance statistics: 21076

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Distances from reference structure (by RMSD)

92, 147, 23, 13, 4, 0, 0, 1, 12, 1, 4, 80, 95, 6, 4, 7, 2, 1, 0, 8,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.034, 0.260, 0.487, 1.059 max_d=1.059 avg_d=0.260 std_dev=0.226
N1 A 0, 0.040, 0.276, 0.512, 1.017 max_d=1.017 avg_d=0.276 std_dev=0.236
C2 B 0, 0.011, 0.459, 0.907, 2.247 max_d=2.247 avg_d=0.459 std_dev=0.448
C6 A 0, 0.049, 0.520, 0.991, 2.122 max_d=2.122 avg_d=0.520 std_dev=0.471
C2 A 0, 0.061, 0.536, 1.012, 1.572 max_d=1.572 avg_d=0.536 std_dev=0.475
C6 B 0, 0.024, 0.538, 1.051, 2.467 max_d=2.467 avg_d=0.538 std_dev=0.513
C4 A 0, 0.040, 0.629, 1.217, 2.550 max_d=2.550 avg_d=0.629 std_dev=0.588
N3 A 0, 0.066, 0.666, 1.266, 2.364 max_d=2.364 avg_d=0.666 std_dev=0.600
N3 B 0, 0.020, 0.620, 1.220, 3.290 max_d=3.290 avg_d=0.620 std_dev=0.600
C5 A 0, 0.056, 0.666, 1.277, 2.672 max_d=2.672 avg_d=0.666 std_dev=0.611
C1' A 0, 0.037, 0.705, 1.374, 2.205 max_d=2.205 avg_d=0.705 std_dev=0.668
C1' B 0, 0.018, 0.720, 1.422, 3.158 max_d=3.158 avg_d=0.720 std_dev=0.702
C5 B 0, 0.028, 0.748, 1.468, 3.522 max_d=3.522 avg_d=0.748 std_dev=0.720
C4 B 0, 0.023, 0.748, 1.472, 3.603 max_d=3.603 avg_d=0.748 std_dev=0.724
O2 B 0, 0.001, 0.909, 1.818, 4.263 max_d=4.263 avg_d=0.909 std_dev=0.908
O2 A 0, 0.095, 1.016, 1.937, 3.094 max_d=3.094 avg_d=1.016 std_dev=0.921
N4 A 0, 0.058, 1.051, 2.044, 4.015 max_d=4.015 avg_d=1.051 std_dev=0.993
O4' A 0, 0.103, 1.201, 2.299, 3.304 max_d=3.304 avg_d=1.201 std_dev=1.098
C2' B 0, 0.073, 1.210, 2.347, 5.214 max_d=5.214 avg_d=1.210 std_dev=1.137
O4' B 0, -0.099, 1.044, 2.186, 5.106 max_d=5.106 avg_d=1.044 std_dev=1.143
O4 B 0, 0.029, 1.178, 2.326, 5.539 max_d=5.539 avg_d=1.178 std_dev=1.148
C2' A 0, -0.041, 1.185, 2.412, 3.960 max_d=3.960 avg_d=1.185 std_dev=1.227
O2' B 0, 0.515, 1.760, 3.004, 5.814 max_d=5.814 avg_d=1.760 std_dev=1.244
C3' A 0, 0.768, 2.017, 3.266, 5.452 max_d=5.452 avg_d=2.017 std_dev=1.249
O3' A 0, 1.637, 2.935, 4.234, 7.291 max_d=7.291 avg_d=2.935 std_dev=1.298
C3' B 0, 0.788, 2.161, 3.533, 7.440 max_d=7.440 avg_d=2.161 std_dev=1.372
O2' A 0, 0.362, 1.803, 3.245, 5.490 max_d=5.490 avg_d=1.803 std_dev=1.442
C4' A 0, 0.242, 1.749, 3.257, 4.720 max_d=4.720 avg_d=1.749 std_dev=1.508
C4' B 0, 0.236, 1.841, 3.446, 7.409 max_d=7.409 avg_d=1.841 std_dev=1.605
O3' B 0, 1.621, 3.238, 4.855, 9.097 max_d=9.097 avg_d=3.238 std_dev=1.617
O5' B 0, 0.685, 2.424, 4.162, 6.843 max_d=6.843 avg_d=2.424 std_dev=1.739
OP2 B 0, 2.013, 3.879, 5.745, 8.474 max_d=8.474 avg_d=3.879 std_dev=1.866
O5' A 0, 0.540, 2.407, 4.274, 6.883 max_d=6.883 avg_d=2.407 std_dev=1.867
C5' B 0, 0.130, 2.202, 4.274, 8.500 max_d=8.500 avg_d=2.202 std_dev=2.072
C5' A 0, 0.026, 2.140, 4.255, 6.045 max_d=6.045 avg_d=2.140 std_dev=2.115
P B 0, 0.974, 3.090, 5.206, 7.679 max_d=7.679 avg_d=3.090 std_dev=2.116
OP2 A 0, 1.704, 3.966, 6.228, 10.457 max_d=10.457 avg_d=3.966 std_dev=2.262
P A 0, 0.777, 3.310, 5.842, 9.047 max_d=9.047 avg_d=3.310 std_dev=2.532
OP1 B 0, 0.944, 3.757, 6.570, 9.842 max_d=9.842 avg_d=3.757 std_dev=2.813
OP1 A 0, 1.437, 4.558, 7.678, 9.355 max_d=9.355 avg_d=4.558 std_dev=3.120

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.08 0.01 0.01 0.02 0.02 0.05 0.02 0.36 0.01 0.25 0.61 0.22 0.26
C2 0.03 0.00 0.23 0.25 0.01 0.16 0.01 0.31 0.01 0.01 0.01 0.02 0.01 0.28 0.23 0.22 0.58 0.92 0.81 0.67
C2' 0.01 0.23 0.00 0.00 0.06 0.01 0.17 0.22 0.23 0.03 0.18 0.08 0.41 0.00 0.04 0.03 0.58 0.82 0.61 0.65
C3' 0.02 0.25 0.00 0.00 0.38 0.01 0.47 0.02 0.44 0.24 0.30 0.41 0.32 0.02 0.01 0.02 0.30 0.53 0.21 0.30
C4 0.02 0.01 0.06 0.38 0.00 0.16 0.01 0.24 0.01 0.01 0.01 0.01 0.02 0.43 0.14 0.05 0.58 1.17 0.79 0.67
C4' 0.01 0.16 0.01 0.01 0.16 0.00 0.33 0.01 0.36 0.10 0.11 0.17 0.39 0.33 0.03 0.01 0.02 0.24 0.24 0.07
C5 0.02 0.01 0.17 0.47 0.01 0.33 0.00 0.54 0.00 0.01 0.01 0.01 0.02 0.48 0.24 0.19 0.88 1.46 1.09 1.02
C5' 0.08 0.31 0.22 0.02 0.24 0.01 0.54 0.00 0.55 0.12 0.21 0.27 0.70 0.11 0.24 0.02 0.01 0.18 0.39 0.02
C6 0.01 0.01 0.23 0.44 0.01 0.36 0.00 0.55 0.00 0.00 0.01 0.01 0.02 0.43 0.22 0.25 0.85 1.31 0.89 0.92
N1 0.01 0.01 0.03 0.24 0.01 0.10 0.01 0.12 0.00 0.00 0.01 0.02 0.02 0.24 0.15 0.02 0.39 0.83 0.36 0.40
N3 0.02 0.01 0.18 0.30 0.01 0.11 0.01 0.21 0.01 0.01 0.00 0.01 0.01 0.36 0.15 0.15 0.54 1.00 0.83 0.65
N4 0.02 0.02 0.08 0.41 0.01 0.17 0.01 0.27 0.01 0.02 0.01 0.00 0.02 0.48 0.17 0.06 0.63 1.26 0.93 0.75
O2 0.05 0.01 0.41 0.32 0.02 0.39 0.02 0.70 0.02 0.02 0.01 0.02 0.00 0.38 0.42 0.40 1.02 1.22 1.41 1.20
O2' 0.02 0.28 0.00 0.02 0.43 0.33 0.48 0.11 0.43 0.24 0.36 0.48 0.38 0.00 0.06 0.22 0.39 0.70 0.68 0.53
O3' 0.36 0.23 0.04 0.01 0.14 0.03 0.24 0.24 0.22 0.15 0.15 0.17 0.42 0.06 0.00 0.24 0.27 0.54 0.26 0.30
O4' 0.01 0.22 0.03 0.02 0.05 0.01 0.19 0.02 0.25 0.02 0.15 0.06 0.40 0.22 0.24 0.00 0.12 0.42 0.28 0.17
O5' 0.25 0.58 0.58 0.30 0.58 0.02 0.88 0.01 0.85 0.39 0.54 0.63 1.02 0.39 0.27 0.12 0.00 0.02 0.02 0.01
OP1 0.61 0.92 0.82 0.53 1.17 0.24 1.46 0.18 1.31 0.83 1.00 1.26 1.22 0.70 0.54 0.42 0.02 0.00 0.01 0.01
OP2 0.22 0.81 0.61 0.21 0.79 0.24 1.09 0.39 0.89 0.36 0.83 0.93 1.41 0.68 0.26 0.28 0.02 0.01 0.00 0.01
P 0.26 0.67 0.65 0.30 0.67 0.07 1.02 0.02 0.92 0.40 0.65 0.75 1.20 0.53 0.30 0.17 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.86 0.42 1.31 1.48 0.62 1.32 0.63 1.64 0.66 0.53 0.45 0.73 1.41 1.54 1.12 0.99 1.91 2.78 1.88 2.33
C2 0.58 0.45 0.88 1.17 0.40 0.89 0.58 1.09 0.59 0.49 0.42 0.57 0.79 1.08 0.53 0.66 1.35 2.20 1.55 1.66
C2' 1.21 0.41 1.63 1.90 0.77 1.85 1.03 2.28 1.19 0.89 0.43 0.52 1.58 1.91 1.25 1.50 2.57 3.54 2.58 3.05
C3' 1.67 0.77 2.17 2.28 1.02 2.29 1.10 2.71 1.34 1.21 0.73 0.88 2.25 2.30 1.61 1.90 2.97 3.66 2.73 3.37
C4 0.35 0.26 0.58 0.83 0.30 0.53 0.29 0.55 0.25 0.22 0.27 0.39 0.81 0.79 0.41 0.35 0.72 1.32 1.15 0.89
C4' 1.49 0.70 2.07 2.19 0.87 2.06 0.75 2.33 0.87 0.94 0.61 1.00 2.31 2.38 1.50 1.60 2.48 3.02 2.20 2.80
C5 0.59 0.46 0.80 0.86 0.33 0.66 0.39 0.77 0.46 0.46 0.41 0.58 1.25 0.87 0.46 0.53 0.92 1.46 1.12 1.09
C5' 1.75 0.94 2.35 2.51 1.13 2.30 1.00 2.40 1.00 1.16 0.84 1.17 2.68 2.83 1.69 1.80 2.34 2.50 1.82 2.39
C6 0.65 0.41 0.99 1.01 0.46 0.82 0.52 1.02 0.53 0.47 0.38 0.59 1.33 0.97 0.70 0.63 1.25 1.86 1.24 1.49
N1 0.60 0.35 0.97 1.11 0.42 0.90 0.47 1.15 0.52 0.41 0.35 0.57 1.10 1.06 0.75 0.67 1.43 2.24 1.43 1.76
N3 0.40 0.37 0.64 0.96 0.42 0.65 0.57 0.77 0.51 0.39 0.32 0.48 0.54 0.82 0.46 0.46 1.04 1.74 1.45 1.27
N4 0.73 0.40 1.00 1.21 0.54 0.97 0.42 0.85 0.35 0.41 0.44 0.65 1.13 1.32 0.84 0.75 0.78 1.08 1.30 0.78
O2 0.92 0.66 1.27 1.64 0.59 1.36 0.79 1.55 0.83 0.74 0.62 0.83 1.07 1.64 0.79 1.05 1.77 2.66 1.96 2.08
O2' 1.20 0.76 1.48 1.89 1.19 1.92 1.41 2.46 1.40 1.04 0.90 0.76 1.24 1.83 1.54 1.59 2.78 3.86 3.12 3.40
O3' 1.79 0.68 2.27 2.49 1.03 2.66 1.17 3.27 1.45 1.24 0.66 0.83 2.25 2.42 1.69 2.19 3.53 4.35 3.62 4.21
O4' 1.21 0.75 1.70 1.75 0.72 1.55 0.50 1.72 0.58 0.77 0.64 1.08 1.94 1.92 1.25 1.20 1.86 2.50 1.59 2.18
O5' 2.04 1.16 2.63 2.81 0.79 2.55 0.85 2.52 1.12 1.42 0.71 1.42 2.92 3.09 1.20 2.07 2.34 2.31 1.47 2.13
OP1 2.40 1.57 3.05 3.24 1.16 2.88 1.18 2.64 1.33 1.72 1.15 1.91 3.47 3.69 1.48 2.33 2.20 1.85 1.27 1.75
OP2 2.13 1.60 2.61 2.60 1.38 2.30 1.48 2.06 1.43 1.64 1.32 1.91 3.24 2.97 1.56 1.96 1.70 1.60 1.14 1.34
P 2.27 1.44 2.85 3.04 1.01 2.73 1.13 2.50 1.30 1.63 1.00 1.75 3.29 3.52 1.28 2.24 2.08 1.85 1.06 1.64

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.02 0.02 0.01 0.02 0.08 0.02 0.01 0.02 0.04 0.02 0.37 0.02 0.01 0.16 0.72 0.18 0.25
C2 0.02 0.00 0.17 0.20 0.01 0.15 0.02 0.23 0.01 0.01 0.01 0.01 0.34 0.30 0.02 0.21 0.29 0.96 0.66 0.34
C2' 0.01 0.17 0.00 0.01 0.06 0.02 0.11 0.22 0.15 0.03 0.13 0.29 0.00 0.03 0.07 0.03 0.49 0.70 0.47 0.57
C3' 0.02 0.20 0.01 0.00 0.41 0.01 0.47 0.02 0.43 0.24 0.29 0.17 0.02 0.01 0.43 0.02 0.09 0.25 0.18 0.12
C4 0.02 0.01 0.06 0.41 0.00 0.17 0.01 0.24 0.01 0.01 0.01 0.02 0.41 0.14 0.01 0.04 0.42 1.24 1.04 0.46
C4' 0.01 0.15 0.02 0.01 0.17 0.00 0.30 0.01 0.31 0.10 0.12 0.32 0.34 0.02 0.18 0.01 0.02 0.16 0.22 0.05
C5 0.02 0.02 0.11 0.47 0.01 0.30 0.00 0.40 0.01 0.01 0.01 0.02 0.46 0.26 0.01 0.18 0.56 1.36 1.07 0.62
C5' 0.08 0.23 0.22 0.02 0.24 0.01 0.40 0.00 0.39 0.11 0.20 0.47 0.12 0.24 0.27 0.02 0.01 0.15 0.41 0.02
C6 0.02 0.01 0.15 0.43 0.01 0.31 0.01 0.39 0.00 0.01 0.01 0.02 0.43 0.21 0.02 0.23 0.50 1.24 0.76 0.54
N1 0.01 0.01 0.03 0.24 0.01 0.10 0.01 0.11 0.01 0.00 0.01 0.02 0.23 0.15 0.02 0.01 0.19 0.96 0.47 0.26
N3 0.02 0.01 0.13 0.29 0.01 0.12 0.01 0.20 0.01 0.01 0.00 0.01 0.37 0.19 0.02 0.13 0.32 1.08 0.87 0.36
O2 0.04 0.01 0.29 0.17 0.02 0.32 0.02 0.47 0.02 0.02 0.01 0.00 0.47 0.54 0.03 0.38 0.50 0.93 0.72 0.55
O2' 0.02 0.34 0.00 0.02 0.41 0.34 0.46 0.12 0.43 0.23 0.37 0.47 0.00 0.06 0.43 0.23 0.37 0.55 0.52 0.47
O3' 0.37 0.30 0.03 0.01 0.14 0.02 0.26 0.24 0.21 0.15 0.19 0.54 0.06 0.00 0.17 0.24 0.24 0.59 0.29 0.33
O4 0.02 0.02 0.07 0.43 0.01 0.18 0.01 0.27 0.02 0.02 0.02 0.03 0.43 0.17 0.00 0.05 0.47 1.29 1.20 0.52
O4' 0.01 0.21 0.03 0.02 0.04 0.01 0.18 0.02 0.23 0.01 0.13 0.38 0.23 0.24 0.05 0.00 0.09 0.58 0.14 0.16
O5' 0.16 0.29 0.49 0.09 0.42 0.02 0.56 0.01 0.50 0.19 0.32 0.50 0.37 0.24 0.47 0.09 0.00 0.02 0.02 0.01
OP1 0.72 0.96 0.70 0.25 1.24 0.16 1.36 0.15 1.24 0.96 1.08 0.93 0.55 0.59 1.29 0.58 0.02 0.00 0.01 0.01
OP2 0.18 0.66 0.47 0.18 1.04 0.22 1.07 0.41 0.76 0.47 0.87 0.72 0.52 0.29 1.20 0.14 0.02 0.01 0.00 0.01
P 0.25 0.34 0.57 0.12 0.46 0.05 0.62 0.02 0.54 0.26 0.36 0.55 0.47 0.33 0.52 0.16 0.01 0.01 0.01 0.00