ClaRNA

Doublet Group info: classifier/base-ribose/W_5BR/GC

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: base-ribose
Desc: W_5BR/GC
Sub-clusters:
count: 12     show
W_5BR/GC/sub-001
W_5BR/GC/sub-002
W_5BR/GC/sub-003
W_5BR/GC/sub-004
W_5BR/GC/sub-005
W_5BR/GC/sub-006
W_5BR/GC/sub-007
W_5BR/GC/sub-008
W_5BR/GC/sub-009
W_5BR/GC/sub-010
W_5BR/GC/sub-011
W_5BR/GC/sub-012
Members:
count: 216
download members
3OI1:A2578:A2586
3OHZ:A2578:A2586
3KNK:A579:A2403
3CCR:02681:02678
3CC7:02681:02678
3CD6:02681:02678
3CCE:02681:02678
3R8T:A783:A2064
1KD1:A2681:A2678
2OTL:02681:02678
3CCQ:02681:02678
1YJN:02681:02678
1YJW:02681:02678
1QVG:02681:02678
3I56:02681:02678
1VQO:02681:02678
3CCV:02681:02678
3G71:02681:02678
3CMA:02681:02678
1K8A:A2681:A2678
1N8R:A2681:A2678
3CPW:02681:02678
1VQN:02681:02678
3CC4:02681:02678
1JJ2:02681:02678
3CCJ:02681:02678
1Q82:A2681:A2678
3CCS:02681:02678
1NJI:A2681:A2678
1K9M:A2681:A2678
1YHQ:02681:02678
3G6E:02681:02678
1VQ6:02681:02678
1S72:02681:02678
2QEX:02681:02678
1YIT:02681:02678
3CCL:02681:02678
3CCM:02681:02678
1M90:A2681:A2678
3CXC:02681:02678
2OTJ:02681:02678
1YIJ:02681:02678
1VQ8:02681:02678
1Q86:A2681:A2678
3CCU:02681:02678
1VQ4:02681:02678
1VQK:02681:02678
1VQ5:02681:02678
1YI2:02681:02678
1FFK:02633:02630
1Q81:A2681:A2678
3CME:02681:02678
1VQL:02681:02678
1VQP:02681:02678
3CC2:02681:02678
1VQ9:02681:02678
1VQM:02681:02678
1YJ9:02681:02678
1VQ7:02681:02678
3U5B:21486:21531
1Q82:A1572:A1537
3CME:01572:01537
3U5F:61498:61543
3U5F:61595:61167
3R8S:A2574:A2603
3F1H:A2565:A2594
3F1F:A2565:A2594
2QUS:A33:A11
2QUS:B33:B11
3DIL:A10:A78
3DIX:A10:A78
3DJ0:A10:A78
3D0U:A7:A75
3DIO:X10:X78
2ZJR:X1168:X494
3DIQ:A10:A78
3DIG:X10:X78
3DJ2:A10:A78
3D0X:A7:A75
3DIR:A10:A78
3R8T:A1927:A1954
1VQ9:01646:01650
1YJ9:01646:01650
3CCV:01646:01650
2OTJ:01646:01650
1Q86:A1646:A1650
3CCE:01646:01650
3OHC:A1276:A1311
3OHD:A1276:A1311
1QVG:01646:01650
3R8S:A1928:A1955
3CCU:01646:01650
1NJI:A1646:A1650
1VQN:01646:01650
3G6E:01646:01650
2QEX:01646:01650
1YI2:01646:01650
3CC7:01646:01650
1YIT:01646:01650
1VQ7:01646:01650
1YJN:01646:01650
1YIJ:01646:01650
1VQ8:01646:01650
3G71:01646:01650
3CC4:01646:01650
1M90:A1646:A1650
3CCL:01646:01650
2OTL:01646:01650
3CCQ:01646:01650
3CC2:01646:01650
1K9M:A1646:A1650
1VQ4:01646:01650
1YJW:01646:01650
3CD6:01646:01650
1VQ6:01646:01650
1N8R:A1646:A1650
3CCM:01646:01650
1Q82:A1646:A1650
1VQL:01646:01650
1FFK:01599:01603
1YHQ:01646:01650
1JJ2:01646:01650
1S72:01646:01650
3CPW:01646:01650
1VQM:01646:01650
1VQK:01646:01650
1KD1:A1646:A1650
1VQ5:01646:01650
3OHY:A1276:A1311
1K8A:A1646:A1650
3OI0:A1276:A1311
1VQO:01646:01650
1VQP:01646:01650
3U5H:51795:51799
3KNK:A1552:A1556
3R8T:A1606:A1610
3OI1:A1553:A1557
3OHK:A1553:A1557
3OHJ:A1553:A1557
2NZ4:P26:E6
3G9C:R26:G4
3L3C:P26:E6
3G9C:Q26:F4
3L3C:S26:H6
2NZ4:S26:H6
3OHZ:A1553:A1557
3OH7:A1553:A1557
3OH5:A1553:A1557
2NZ4:R26:G6
3R8S:A1606:A1610
3G8T:P26:E6
2NZ4:Q26:F6
3L3C:Q26:F6
3L3C:R26:G6
3G9C:S26:H4
3G9C:P26:E4
1FG0:A357:A325
1FFK:02319:02287
3KNI:A1552:A1556
3F1F:A1631:A1635
3F1H:A1631:A1635
2QA4:02365:02333
1VQ9:02366:02334
1VQO:02366:02334
3CCR:02366:02334
1VQK:02366:02334
1VQ8:02366:02334
1Q81:A2366:A2334
3CMA:02366:02334
3CCS:02366:02334
1VQP:02366:02334
3CCM:02366:02334
1VQL:02366:02334
2QEX:02366:02334
1VQM:02366:02334
1YJN:02366:02334
3CME:02366:02334
3CCE:02366:02334
3CPW:02366:02334
1K9M:A2366:A2334
1VQN:02366:02334
1K8A:A2366:A2334
1VQ6:02366:02334
1S72:02366:02334
1JJ2:02366:02334
3CC2:02366:02334
1YJW:02366:02334
3CCJ:02366:02334
1Q82:A2366:A2334
1VQ5:02366:02334
3G6E:02366:02334
2OTJ:02366:02334
2OTL:02366:02334
1NJI:A2366:A2334
1KD1:A2366:A2334
3CCV:02366:02334
1YI2:02366:02334
1N8R:A2366:A2334
1YHQ:02366:02334
1VQ7:02366:02334
3CCQ:02366:02334
3CD6:02366:02334
1VQ4:02366:02334
3CC4:02366:02334
1YIJ:02366:02334
1Q86:A2366:A2334
1QVG:02366:02334
3CXC:02366:02334
3G71:02366:02334
3CC7:02366:02334
3I56:02366:02334
1M90:A2366:A2334
3CCL:02366:02334
3CCU:02366:02334
1YIT:02366:02334
1YJ9:02366:02334
Closest classifer groups: show all      show selected
Group Members RMSD
stacking/<< 9173 0.411
stacking/>> 9173 0.413
base-ribose/H_0BR 590 0.580
base-phosphate/W_5BPh 855 0.600
base-ribose/W_4BR 362 0.640
base-ribose/W_3BR 156 0.871
base-phosphate/W_4BPh 1128 1.090
stacking/>< 987 1.236
bp/WH_tran 1 1.612
bp/HW_cis 23 2.209

Extra

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Reference image (generated by PyMOL):
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All members (generated by PyMOL):
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show in jmol