ClaRNA

Doublet Group distance statistics: 2252

back

Distances from reference structure (by RMSD)

47, 15, 9, 0, 0, 0, 7, 74, 49, 23, 14, 7, 2, 2, 0, 0, 1, 6, 68, 106,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.150, 0.497, 0.844, 1.935 max_d=1.935 avg_d=0.497 std_dev=0.347
C2 B 0, 0.291, 0.841, 1.392, 3.948 max_d=3.948 avg_d=0.841 std_dev=0.550
N1 A 0, 0.113, 0.715, 1.317, 2.604 max_d=2.604 avg_d=0.715 std_dev=0.602
C2 A 0, 0.247, 0.861, 1.474, 2.204 max_d=2.204 avg_d=0.861 std_dev=0.613
C6 B 0, 0.361, 1.005, 1.650, 2.364 max_d=2.364 avg_d=1.005 std_dev=0.644
C6 A 0, 0.287, 0.951, 1.616, 3.108 max_d=3.108 avg_d=0.951 std_dev=0.664
C5 A 0, 0.425, 1.109, 1.792, 3.147 max_d=3.147 avg_d=1.109 std_dev=0.683
N3 A 0, 0.358, 1.191, 2.024, 2.806 max_d=2.806 avg_d=1.191 std_dev=0.833
C4 A 0, 0.431, 1.297, 2.164, 3.060 max_d=3.060 avg_d=1.297 std_dev=0.866
O2 B 0, 0.433, 1.368, 2.302, 5.890 max_d=5.890 avg_d=1.368 std_dev=0.935
C1' B 0, 0.338, 1.352, 2.365, 3.791 max_d=3.791 avg_d=1.352 std_dev=1.014
O2 A 0, 0.354, 1.425, 2.496, 4.067 max_d=4.067 avg_d=1.425 std_dev=1.071
N3 B 0, 0.403, 1.488, 2.573, 4.606 max_d=4.606 avg_d=1.488 std_dev=1.085
C5 B 0, 0.269, 1.523, 2.778, 4.348 max_d=4.348 avg_d=1.523 std_dev=1.255
C1' A 0, 0.206, 1.470, 2.733, 4.230 max_d=4.230 avg_d=1.470 std_dev=1.264
O4 A 0, 0.588, 2.013, 3.438, 5.035 max_d=5.035 avg_d=2.013 std_dev=1.425
C4 B 0, 0.268, 1.733, 3.199, 5.183 max_d=5.183 avg_d=1.733 std_dev=1.465
O4' B 0, 0.205, 1.677, 3.148, 5.178 max_d=5.178 avg_d=1.677 std_dev=1.471
C2' B 0, 0.754, 2.276, 3.797, 5.577 max_d=5.577 avg_d=2.276 std_dev=1.522
C2' A 0, 0.529, 2.163, 3.798, 5.132 max_d=5.132 avg_d=2.163 std_dev=1.634
O4' A 0, 0.244, 1.998, 3.751, 5.814 max_d=5.814 avg_d=1.998 std_dev=1.754
C3' B 0, 0.553, 2.430, 4.308, 5.915 max_d=5.915 avg_d=2.430 std_dev=1.877
C3' A 0, 0.619, 2.625, 4.631, 6.697 max_d=6.697 avg_d=2.625 std_dev=2.006
C4' B 0, 0.374, 2.385, 4.395, 6.532 max_d=6.532 avg_d=2.385 std_dev=2.010
O2' A 0, 0.865, 2.877, 4.889, 6.543 max_d=6.543 avg_d=2.877 std_dev=2.012
O5' A 0, 1.610, 3.749, 5.888, 7.840 max_d=7.840 avg_d=3.749 std_dev=2.139
O2' B 0, 1.099, 3.259, 5.419, 7.955 max_d=7.955 avg_d=3.259 std_dev=2.160
O3' A 0, 0.726, 2.926, 5.125, 8.921 max_d=8.921 avg_d=2.926 std_dev=2.200
C4' A 0, 0.337, 2.559, 4.781, 7.401 max_d=7.401 avg_d=2.559 std_dev=2.222
N4 B 0, 0.383, 2.628, 4.874, 7.667 max_d=7.667 avg_d=2.628 std_dev=2.246
O5' B 0, 0.227, 2.521, 4.815, 7.295 max_d=7.295 avg_d=2.521 std_dev=2.294
C5' B 0, 0.319, 2.639, 4.958, 7.348 max_d=7.348 avg_d=2.639 std_dev=2.319
C5' A 0, 0.909, 3.391, 5.874, 8.601 max_d=8.601 avg_d=3.391 std_dev=2.483
O3' B 0, 0.881, 3.500, 6.118, 8.383 max_d=8.383 avg_d=3.500 std_dev=2.618
P A 0, 2.159, 4.981, 7.802, 9.446 max_d=9.446 avg_d=4.981 std_dev=2.821
P B 0, 0.076, 2.921, 5.767, 8.786 max_d=8.786 avg_d=2.921 std_dev=2.845
OP2 B 0, 0.214, 3.080, 5.945, 8.282 max_d=8.282 avg_d=3.080 std_dev=2.865
OP2 A 0, 1.877, 5.033, 8.189, 11.828 max_d=11.828 avg_d=5.033 std_dev=3.156
OP1 B 0, 0.359, 3.589, 6.819, 10.112 max_d=10.112 avg_d=3.589 std_dev=3.230
OP1 A 0, 2.704, 5.946, 9.189, 10.811 max_d=10.811 avg_d=5.946 std_dev=3.243

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.02 0.02 0.02 0.02 0.11 0.02 0.01 0.02 0.04 0.03 0.35 0.02 0.01 0.37 0.58 0.42 0.34
C2 0.02 0.00 0.21 0.35 0.01 0.20 0.01 0.30 0.01 0.01 0.01 0.01 0.29 0.31 0.02 0.16 0.61 0.92 0.94 0.66
C2' 0.01 0.21 0.00 0.00 0.06 0.02 0.19 0.24 0.24 0.03 0.14 0.40 0.00 0.04 0.07 0.02 0.62 0.75 0.62 0.60
C3' 0.02 0.35 0.00 0.00 0.33 0.01 0.41 0.02 0.41 0.20 0.34 0.57 0.02 0.01 0.35 0.03 0.30 0.38 0.36 0.21
C4 0.02 0.01 0.06 0.33 0.00 0.11 0.01 0.25 0.01 0.01 0.01 0.02 0.37 0.15 0.01 0.03 0.69 1.36 1.27 0.92
C4' 0.02 0.20 0.02 0.01 0.11 0.00 0.23 0.01 0.25 0.07 0.15 0.37 0.33 0.03 0.12 0.01 0.02 0.26 0.24 0.12
C5 0.02 0.01 0.19 0.41 0.01 0.23 0.00 0.42 0.00 0.01 0.01 0.01 0.39 0.33 0.01 0.12 0.86 1.59 1.41 1.13
C5' 0.11 0.30 0.24 0.02 0.25 0.01 0.42 0.00 0.43 0.17 0.27 0.54 0.13 0.25 0.26 0.02 0.01 0.33 0.41 0.02
C6 0.02 0.01 0.24 0.41 0.01 0.25 0.00 0.43 0.00 0.01 0.01 0.02 0.35 0.33 0.01 0.16 0.85 1.40 1.20 1.02
N1 0.01 0.01 0.03 0.20 0.01 0.07 0.01 0.17 0.01 0.00 0.01 0.02 0.21 0.17 0.02 0.02 0.53 0.92 0.76 0.58
N3 0.02 0.01 0.14 0.34 0.01 0.15 0.01 0.27 0.01 0.01 0.00 0.01 0.33 0.20 0.01 0.11 0.65 1.11 1.14 0.78
O2 0.04 0.01 0.40 0.57 0.02 0.37 0.01 0.54 0.02 0.02 0.01 0.00 0.36 0.59 0.02 0.27 0.81 0.96 1.13 0.85
O2' 0.03 0.29 0.00 0.02 0.37 0.33 0.39 0.13 0.35 0.21 0.33 0.36 0.00 0.07 0.40 0.21 0.39 0.62 0.51 0.45
O3' 0.35 0.31 0.04 0.01 0.15 0.03 0.33 0.25 0.33 0.17 0.20 0.59 0.07 0.00 0.16 0.25 0.27 0.71 0.35 0.42
O4 0.02 0.02 0.07 0.35 0.01 0.12 0.01 0.26 0.01 0.02 0.01 0.02 0.40 0.16 0.00 0.04 0.72 1.45 1.40 0.99
O4' 0.01 0.16 0.02 0.03 0.03 0.01 0.12 0.02 0.16 0.02 0.11 0.27 0.21 0.25 0.04 0.00 0.22 0.37 0.33 0.19
O5' 0.37 0.61 0.62 0.30 0.69 0.02 0.86 0.01 0.85 0.53 0.65 0.81 0.39 0.27 0.72 0.22 0.00 0.02 0.02 0.01
OP1 0.58 0.92 0.75 0.38 1.36 0.26 1.59 0.33 1.40 0.92 1.11 0.96 0.62 0.71 1.45 0.37 0.02 0.00 0.01 0.01
OP2 0.42 0.94 0.62 0.36 1.27 0.24 1.41 0.41 1.20 0.76 1.14 1.13 0.51 0.35 1.40 0.33 0.02 0.01 0.00 0.01
P 0.34 0.66 0.60 0.21 0.92 0.12 1.13 0.02 1.02 0.58 0.78 0.85 0.45 0.42 0.99 0.19 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 1.32 1.80 1.61 1.68 2.80 1.56 2.72 1.36 1.99 1.59 2.33 3.35 1.61 2.03 2.25 1.24 0.60 0.96 1.19 0.30
C2 0.84 1.10 1.27 1.37 1.86 1.21 1.88 1.14 1.33 0.96 1.48 2.24 1.00 1.55 1.78 0.82 0.51 1.04 1.16 0.26
C2' 1.66 1.94 1.98 2.01 2.79 1.89 2.64 1.53 1.95 1.71 2.38 3.35 1.89 2.52 2.69 1.54 0.77 1.01 1.16 0.31
C3' 1.62 1.93 2.04 2.09 2.90 1.90 2.70 1.54 1.93 1.67 2.44 3.56 1.86 2.60 2.75 1.47 0.78 1.11 1.19 0.43
C4 1.08 1.41 1.64 1.49 1.98 1.02 1.85 0.85 1.32 1.17 1.73 2.35 1.39 1.88 1.68 0.74 0.73 1.16 0.91 0.37
C4' 1.44 2.08 1.81 1.89 3.24 1.65 3.01 1.41 2.16 1.78 2.73 3.98 1.87 2.23 2.49 1.26 0.65 1.04 1.18 0.35
C5 1.07 1.45 1.68 1.60 2.21 1.13 2.02 0.94 1.37 1.17 1.89 2.72 1.40 2.07 1.99 0.74 0.70 1.14 0.95 0.33
C5' 1.43 2.01 1.85 2.00 3.21 1.73 2.95 1.50 2.08 1.70 2.69 4.00 1.79 2.28 2.64 1.26 0.80 1.15 1.19 0.48
C6 0.91 1.30 1.53 1.60 2.25 1.24 2.12 1.08 1.39 1.04 1.82 2.83 1.18 1.97 2.14 0.73 0.59 1.10 1.04 0.25
N1 0.95 1.31 1.42 1.54 2.25 1.33 2.20 1.19 1.52 1.12 1.80 2.76 1.16 1.82 2.08 0.89 0.55 1.04 1.13 0.24
N3 0.71 0.94 1.28 1.27 1.57 0.96 1.56 0.90 1.03 0.76 1.27 1.92 0.92 1.47 1.52 0.54 0.55 1.13 1.03 0.25
O2 1.17 1.41 1.36 1.41 2.00 1.38 2.08 1.29 1.66 1.33 1.69 2.28 1.32 1.58 1.73 1.16 0.61 0.93 1.24 0.38
O2' 2.10 2.38 2.31 2.21 3.09 2.21 2.89 1.76 2.27 2.14 2.75 3.61 2.39 2.92 2.90 1.98 1.00 0.99 1.21 0.55
O3' 1.72 2.08 2.06 2.06 3.02 1.95 2.78 1.57 2.02 1.79 2.60 3.71 2.04 2.68 2.74 1.58 0.79 1.13 1.21 0.57
O4 1.50 1.89 1.95 1.58 2.29 1.08 2.12 0.81 1.70 1.66 2.15 2.56 1.88 2.11 1.54 1.07 0.93 1.16 0.81 0.53
O4' 1.32 2.00 1.64 1.73 3.14 1.47 2.98 1.31 2.16 1.73 2.63 3.79 1.75 1.98 2.25 1.15 0.60 1.01 1.18 0.36
O5' 1.61 2.00 2.00 2.15 3.12 1.94 2.90 1.69 2.10 1.76 2.62 3.88 1.82 2.44 2.80 1.50 1.15 1.41 1.28 0.84
OP1 1.71 2.32 2.05 2.19 3.56 1.94 3.29 1.71 2.43 2.04 3.02 4.39 2.06 2.43 2.87 1.57 1.46 1.54 1.76 1.29
OP2 2.27 2.38 2.52 2.71 3.23 2.65 3.02 2.40 2.42 2.24 2.83 3.92 2.30 2.87 3.31 2.28 1.84 1.92 1.56 1.46
P 1.77 2.13 2.10 2.26 3.26 2.09 3.01 1.82 2.23 1.90 2.75 4.04 1.96 2.51 2.93 1.69 1.34 1.50 1.43 1.04

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.01 0.02 0.01 0.02 0.08 0.01 0.01 0.02 0.02 0.03 0.02 0.30 0.01 0.27 0.28 0.31 0.23
C2 0.02 0.00 0.22 0.23 0.01 0.11 0.01 0.19 0.01 0.01 0.00 0.01 0.01 0.21 0.17 0.22 0.46 0.39 0.52 0.40
C2' 0.01 0.22 0.00 0.01 0.07 0.02 0.14 0.20 0.19 0.03 0.18 0.07 0.37 0.00 0.03 0.02 0.57 0.63 0.69 0.58
C3' 0.01 0.23 0.01 0.00 0.36 0.01 0.38 0.02 0.34 0.22 0.30 0.39 0.19 0.02 0.01 0.03 0.35 0.51 0.24 0.32
C4 0.02 0.01 0.07 0.36 0.00 0.14 0.01 0.17 0.01 0.01 0.00 0.00 0.01 0.35 0.17 0.04 0.62 0.60 0.80 0.63
C4' 0.01 0.11 0.02 0.01 0.14 0.00 0.27 0.01 0.29 0.08 0.08 0.15 0.27 0.30 0.03 0.01 0.02 0.17 0.22 0.07
C5 0.02 0.01 0.14 0.38 0.01 0.27 0.00 0.34 0.00 0.01 0.01 0.01 0.02 0.49 0.23 0.17 0.71 0.71 0.86 0.75
C5' 0.08 0.19 0.20 0.02 0.17 0.01 0.34 0.00 0.35 0.09 0.15 0.19 0.39 0.11 0.20 0.02 0.01 0.26 0.33 0.02
C6 0.01 0.01 0.19 0.34 0.01 0.29 0.00 0.35 0.00 0.00 0.01 0.01 0.02 0.48 0.18 0.24 0.64 0.59 0.66 0.63
N1 0.01 0.01 0.03 0.22 0.01 0.08 0.01 0.09 0.00 0.00 0.01 0.01 0.02 0.20 0.11 0.02 0.43 0.38 0.46 0.38
N3 0.02 0.00 0.18 0.30 0.00 0.08 0.01 0.15 0.01 0.01 0.00 0.01 0.01 0.25 0.14 0.17 0.53 0.47 0.66 0.50
N4 0.02 0.01 0.07 0.39 0.00 0.15 0.01 0.19 0.01 0.01 0.01 0.00 0.02 0.39 0.21 0.04 0.67 0.68 0.91 0.71
O2 0.03 0.01 0.37 0.19 0.01 0.27 0.02 0.39 0.02 0.02 0.01 0.02 0.00 0.40 0.32 0.40 0.48 0.44 0.52 0.43
O2' 0.02 0.21 0.00 0.02 0.35 0.30 0.49 0.11 0.48 0.20 0.25 0.39 0.40 0.00 0.05 0.20 0.35 0.44 0.70 0.43
O3' 0.30 0.17 0.03 0.01 0.17 0.03 0.23 0.20 0.18 0.11 0.14 0.21 0.32 0.05 0.00 0.21 0.29 0.52 0.30 0.31
O4' 0.01 0.22 0.02 0.03 0.04 0.01 0.17 0.02 0.24 0.02 0.17 0.04 0.40 0.20 0.21 0.00 0.11 0.28 0.26 0.21
O5' 0.27 0.46 0.57 0.35 0.62 0.02 0.71 0.01 0.64 0.43 0.53 0.67 0.48 0.35 0.29 0.11 0.00 0.02 0.02 0.01
OP1 0.28 0.39 0.63 0.51 0.60 0.17 0.71 0.26 0.59 0.38 0.47 0.68 0.44 0.44 0.52 0.28 0.02 0.00 0.02 0.01
OP2 0.31 0.52 0.69 0.24 0.80 0.22 0.86 0.33 0.66 0.46 0.66 0.91 0.52 0.70 0.30 0.26 0.02 0.02 0.00 0.01
P 0.23 0.40 0.58 0.32 0.63 0.07 0.75 0.02 0.63 0.38 0.50 0.71 0.43 0.43 0.31 0.21 0.01 0.01 0.01 0.00