sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3IVN-B36-B34
X
>3IVN-A36-A34
X
>3I2Q-C8-C5
X
>3I2S-C8-C5
X
>1TTT-E47-E19
X
>3U5F-61191-61170
X
>3R8O-A970-A949
X
>1FJG-A944-A923
X
>1XMQ-A944-A923
X
>2UUA-A944-A923
X
>2UXC-A944-A923
X
>2UUB-A944-A923
X
</seq>
<hsp>
0 1:0.0577277847976
0 2:0.98876343539
0 3:0.976505238788
0 4:0.920637523496
0 5:0.908414336862
0 6:0.856554127616
0 7:0.880455393388
0 8:0.891203271177
0 9:0.91138979743
0 10:0.901040108691
0 11:0.899401780615
1 2:1.0
1 3:0.987864237309
1 4:0.932008007991
1 5:0.8997308229
1 6:0.849688138924
1 7:0.872450498314
1 8:0.882869245436
1 9:0.903466292682
1 10:0.893056632541
1 11:0.891603660275
2 3:0.0349280763851
2 4:0.477854197874
2 5:0.741815439375
2 6:0.752150651671
2 7:0.771442190603
2 8:0.748313485493
2 9:0.751221796995
2 10:0.755145590112
2 11:0.751992156615
3 4:0.467825695789
3 5:0.737483095303
3 6:0.752511362436
3 7:0.771372138462
3 8:0.746919390066
3 9:0.750066156186
3 10:0.754195290449
3 11:0.751266066101
4 5:0.67985388134
4 6:0.741707664337
4 7:0.731490329316
4 8:0.694004705489
4 9:0.700776073362
4 10:0.707936570091
4 11:0.707373942295
5 6:0.187462799486
5 7:0.149643415936
5 8:0.157101478787
5 9:0.114289631183
5 10:0.149513068264
5 11:0.135433857533
6 7:0.0870715630278
6 8:0.109591178033
6 9:0.121631399623
6 10:0.108155740644
6 11:0.0965367221778
7 8:0.0868651340898
7 9:0.0606561580611
7 10:0.0686509851163
7 11:0.0603387979405
8 9:0.0706453618003
8 10:0.0367673812194
8 11:0.0466343000674
9 10:0.0467853072284
9 11:0.0399036712764
10 11:0.0262479135879
</hsp>