sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-2454-2452
X
>3R8T-B41-B38
X
>3PDR-A21-A19
X
>3PDR-X21-X19
X
>1FFK-01332-01330
X
>3CXC-01379-01377
X
>1VQ9-01379-01377
X
>1NJI-A1379-A1377
X
>3CCL-01379-01377
X
>3CC2-01379-01377
X
>1JJ2-01379-01377
X
>1S72-01379-01377
X
</seq>
<hsp>
0 1:1.0
0 2:0.656269663918
0 3:0.686495252409
0 4:0.790126913437
0 5:0.764598789348
0 6:0.785725190649
0 7:0.783343841772
0 8:0.766954623028
0 9:0.782102195871
0 10:0.779938767258
0 11:0.77764515677
1 2:0.802671241048
1 3:0.783158520827
1 4:0.60958023224
1 5:0.602049748628
1 6:0.589216314956
1 7:0.606169913049
1 8:0.600088553593
1 9:0.608301529338
1 10:0.608166904903
1 11:0.606246624365
2 3:0.0521362473576
2 4:0.537719755342
2 5:0.521737049632
2 6:0.534634402991
2 7:0.512301350664
2 8:0.517989544608
2 9:0.521049646521
2 10:0.521381764792
2 11:0.519840056753
3 4:0.518126917506
3 5:0.503103754666
3 6:0.515569199036
3 7:0.492373376506
3 8:0.499396639612
3 9:0.501581756987
3 10:0.502114907589
3 11:0.500618950268
4 5:0.0449199277661
4 6:0.0389667579189
4 7:0.0435049659654
4 8:0.0434066192536
4 9:0.0250273136584
4 10:0.0263189139178
4 11:0.0312752738889
5 6:0.037506690117
5 7:0.0330999830318
5 8:0.0205858578027
5 9:0.0326951718865
5 10:0.0325142309316
5 11:0.0299034120716
6 7:0.0378937787632
6 8:0.0269708793373
6 9:0.0283735840303
6 10:0.02598871965
6 11:0.0241530578221
7 8:0.0303050805506
7 9:0.0224606116546
7 10:0.0255377999543
7 11:0.0240106273187
8 9:0.0251358873956
8 10:0.0245588590753
8 11:0.0193669497674
9 10:0.00692551994327
9 11:0.00947643665974
10 11:0.00650683138566
</hsp>