ClaRNA

Doublet Group info: classifier/bp/SS_tran/GA

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: bp
Desc: SS_tran/GA
Sub-clusters:
count: 9     show
SS_tran/GA/sub-001
SS_tran/GA/sub-002
SS_tran/GA/sub-003
SS_tran/GA/sub-004
SS_tran/GA/sub-005
SS_tran/GA/sub-006
SS_tran/GA/sub-007
SS_tran/GA/sub-008
SS_tran/GA/sub-009
Members:
count: 3496
download members
1VQO:01408:01452
3CC4:0446:0451
1HR2:A146:A50
3CMA:02501:0520
1VQK:0446:0451
3CPW:0401:0181
1YIT:01903:01915
1VQ9:0446:0451
3OI0:A546:A552
3CC2:0401:0181
1VQL:0401:0181
3CCL:02662:02753
3G9C:Q67:Q86
1YIT:01308:0437
1M90:A1903:A1915
3CXC:0401:0181
1ET4:C7:C24
1VQ8:02501:0520
3CCJ:02206:02211
3CC7:01764:02722
3MXH:R72:R27
3OHZ:A1292:A1333
1YHQ:01903:01915
3CME:01764:02722
3CXC:01501:01574
1YJW:01764:02722
3G8T:Q23:Q111
3CC4:02021:0524
1VQ5:01903:01915
1N8R:A2021:A524
1VQ9:01501:01574
1K9M:A1903:A1915
1L2X:A3:A19
2UUB:A37:A600
3I56:0729:0686
1VQN:01764:02722
2OTJ:02021:0524
3F1H:A829:A604
3CCE:0729:0686
3CCU:01501:01574
3CME:01903:01915
1N8R:A729:A686
3OXD:A72:A10
3OHK:A2399:A1078
3CC7:01501:01574
3KNH:A885:A1366
3D2X:B8:B43
3CD6:0889:0631
2J01:A2426:A1869
1VQ6:01059:01066
3CCL:01501:01574
3CXC:0889:0631
1VQM:01764:02722
1VQ9:02021:0524
1YHQ:0889:0631
3CXC:02014:01038
1GID:A147:A50
1JJ2:02021:0524
3OWZ:A72:A10
1VQK:01059:01066
3CPW:0889:0631
1VQL:0889:0631
3F1H:A1753:A2842
3KNK:A2341:A2503
2J03:A2401:A2619
3CCL:0889:0631
3OH7:A73:A306
3CCL:01790:0861
1VQN:02014:01038
3CCL:02014:01038
2R8S:R109:R82
1KD1:A1059:A1066
1Q82:A1764:A2722
3R8S:A2618:A525
1VQ5:0889:0631
1Q82:A1434:A1824
1NJI:A2014:A1038
1YJW:01059:01066
3I56:01434:01824
3CCU:01282:0540
3CCQ:01059:01066
3CCS:01282:0540
3CPW:01764:02722
3OHJ:A48:A119
1QVG:02014:01038
3CCS:0889:0631
3F1H:A2533:A1947
3OHD:A37:A600
3OXB:A72:A10
1XMQ:A894:A1369
3CCL:01059:01066
3CCV:01282:0540
3CXC:01059:01066
2OTJ:01434:01824
3P22:A6:B3
3OHK:A91:A77
3CCS:01059:01066
3OHZ:A2325:A960
3CCE:01005:01041
1N8R:A1434:A1824
3CCR:01005:01041
1YJ9:02160:02266
1YJ9:01434:01824
1VQN:01282:0540
3OH7:A2325:A960
1VQ4:02014:01038
2J03:A817:A595
3CC7:01282:0540
1VQ4:01282:0540
3OHK:A2461:A2638
1VQ4:01790:0861
2ZJR:X2613:X2666
3CCU:01005:01041
3L3C:Q23:Q111
3OHJ:A2461:A2638
3F1F:A286:A256
3OH7:A1701:A789
3D0X:A10:A77
2ZJR:X704:X1269
2OTL:01282:0540
3G71:02014:01038
2J03:A2157:A2265
1Q82:A1059:A1066
3G71:01259:01289
1YI2:01259:01289
1VQP:01434:01824
1S72:01790:0861
1FJG:A1197:A931
3CPW:01259:01289
3OHK:A817:A595
3KNK:A2400:A965
3OHZ:A48:A119
3R8N:V29:A1337
1KD1:A2425:A1940
3CCS:01434:01824
1QVG:02312:02474
3KNK:A2733:A2786
1VQL:01790:0861
1VQ5:01259:01289
3OHZ:A2658:A2711
3OI1:A778:A1303
3KNI:A778:A1309
1M90:A2425:A1940
2OTJ:02014:01038
1MMS:C4:C34
3D0U:A10:A77
3CCJ:0889:0631
1NJI:A1790:A861
1QVG:01282:0540
1JJ2:02425:01940
1Q86:A2425:A1940
1VQO:01790:0861
3OHZ:A282:A253
1Q82:A2686:A2745
1XMQ:A131:A197
3OHJ:A2379:A1869
1YJN:01434:01824
3DIL:A13:A80
3CMA:01005:01041
3CCV:01259:01289
3OI1:A2379:A1869
3CCS:02056:0754
1KD1:A1005:A1041
1VQ9:01434:01824
3OH5:A1143:A1175
3CC4:01259:01289
3R8N:A1219:A957
3OH5:A2375:A2395
1S72:02686:02745
3CCE:01790:0861
3CMA:02425:01940
3OHK:A1143:A1175
1YJ9:01259:01289
1M90:A1005:A1041
3CME:02425:01940
2OTL:02056:0754
1YJN:01526:01590
1YIT:02312:02474
2OTJ:01259:01289
3DIY:A13:A80
1VQ8:967:910
1YI2:02686:02745
1VQ7:02686:02745
3CCL:02686:02745
3KNI:A2450:A2470
3CCV:02312:02474
1K9M:A2056:A754
1YI2:02312:02474
3DJ0:A13:A80
3CMA:02312:02474
3CC2:02312:02474
3G71:02312:02474
1VQ8:01526:01590
3CCQ:02312:02474
3B4B:B8:B94
1Q81:A2056:A754
3U5D:11385:1406
2QEX:02056:0754
1YIT:02056:0754
3CCL:967:910
1YJN:02056:0754
3CCV:02686:02745
3G71:01526:01590
3CCU:02312:02474
1YJ9:0850:01418
1K9M:A1526:A1590
3CCV:01323:0509
3OI1:A1209:A528
3CC4:02312:02474
1VQN:02056:0754
3CPW:0850:01418
1FFK:967:910
3U5D:1846:11479
3CPW:967:910
2OTJ:01323:0509
3CPW:01526:01590
3OHZ:A1209:A528
1YIJ:01323:0509
1VQP:967:910
3CCE:02312:02474
3CD6:01323:0509
1VQN:01323:0509
1YJ9:01323:0509
1YHQ:0850:01418
1VQ8:01323:0509
1VQ4:967:910
1VQ6:967:910
1Q82:A2421:A2441
1YJW:02421:02441
1S72:0850:01418
2OTJ:01526:01590
2QEX:0850:01418
1Q82:A1323:A509
1Q81:A1323:A509
3CCM:02421:02441
3CCL:02421:02441
1VQK:0850:01418
1VQ7:01526:01590
1VQ7:0262:0231
1KD1:A262:A231
3CCS:02421:02441
1VQM:02421:02441
1JJ2:02421:02441
1YI2:0850:01418
1YJ9:0262:0231
1VQL:0850:01418
1YIJ:0262:0231
1Q86:A1323:A509
1VQ6:0262:0231
1YJN:0262:0231
3CC2:0262:0231
3CCS:0262:0231
2UUA:A460:A363
2J02:A460:A363
3OHD:A460:A363
2ZZN:C15:C57
3F1H:A960:A839
3F1F:A960:A839
2ZJR:X855:X753
3CCQ:01836:01817
1NJI:A1836:A1817
2QA4:01654:01445
2UUA:A1469:A1491
1FFK:01608:01399
1XMQ:A1040:A1162
3OHY:A1045:A1167
3OI0:A1045:A1167
3CXC:01655:01446
3OGE:A237:A272
3CCE:071:088
3CD6:071:088
2VQE:A666:A682
3SD3:A43:A7
1YJN:0927:0991
3CCS:01655:01446
3CC7:01655:01446
1Q81:A1655:A1446
2QEX:071:088
1YIJ:071:088
3I56:0927:0991
1KD1:A879:A149
3CPW:071:088
3CC4:071:088
1JJ2:071:088
1M90:A1655:A1446
3OGE:A1483:A745
1K9M:A927:A991
3OHC:A1045:A1167
1FFK:071:088
1N32:A237:A272
1VQO:01655:01446
1VQK:01655:01446
2UUB:A1469:A1491
3SD1:A43:A7
2VQE:A1469:A1491
1YIT:0879:0149
3CMA:01655:01446
1VQM:01655:01446
3CPW:0927:0991
3G6E:0879:0149
1XMQ:A666:A682
1YJW:071:088
1N32:A309:A1411
1QVG:0879:0149
3OHC:A1483:A745
3CCL:0927:0991
2QBZ:X7:X56
3F1H:A1644:A1320
2J00:A1483:A745
3CXC:0879:0149
3PDR:A7:A56
2UUA:A309:A1411
1YJ9:071:088
1FJG:A381:A461
3R8S:A1374:A1565
1N8R:A1360:A1340
3CMA:02459:52
1VQ9:01175:01111
3OHZ:A2161:A2166
1VQK:01175:01111
3CMA:01360:01340
2OTL:02206:02211
3CCR:02141:02202
1VQO:01360:01340
1JJ2:01360:01340
1Q81:A2074:A1868
1VQM:01175:01111
1VQP:01360:01340
1VQM:02662:02753
3CCV:01034:01057
3CCJ:920:92
3G6E:01175:01111
1VQ9:02141:02202
1Q81:A2206:A2211
2QA4:02205:02210
3G6E:02141:02202
3G6E:01034:01057
3OI1:A2457:A2612
3CCJ:02074:01868
3G71:02141:02202
1VQ4:01034:01057
1VQK:044:059
1VQ4:02206:02211
1KD1:B20:B2
1K9M:A2141:A2202
1VQ6:01034:01057
1Q81:A2113:A1889
1VQ4:02141:02202
1VQP:01034:01057
3CC4:02206:02211
1VQ7:02141:02202
1QVG:01034:01057
3OHD:A889:A836
3OHJ:A1747:A1728
3CCR:02113:01889
1VQM:02141:02202
1N32:A222:A253
2QA4:0219:0653
3OI1:A2064:A1806
1Q81:A1175:A1111
3I56:0219:0654
1VQK:02206:02211
3OHC:A95:A55
3CCR:0219:0654
1VQM:044:059
3CC4:0219:0654
2OTL:01034:01057
3CCV:02662:02753
3OH5:A1318:A1735
3OHJ:A1318:A1735
1K9M:B20:B2
1JJ2:01034:01057
3CCL:044:059
1VQ6:02503:02655
1VQP:02206:02211
3OWZ:A83:B35
1YJ9:01052:0554
1S72:01034:01057
1FG0:A197:A202
1FJG:A1066:A1146
1M90:A2206:A2211
3CC4:02113:01889
2UUB:A889:A836
3CCR:02206:02211
1VQ4:0986:0926
1YJW:01408:01452
1JJ2:01175:01111
1K8A:A2113:A1889
1VQN:02206:02211
1VQ7:01052:0554
3I56:02141:02202
3CPW:920:92
3CCQ:02113:01889
1K8A:A2141:A2202
2QEX:01034:01057
3OHJ:A2064:A1806
3CD6:0986:0926
1VQ5:02113:01889
1YJN:044:059
1VQ7:02113:01889
3OH7:A2457:A2612
3G71:920:92
3R8S:A1897:A1921
1Q86:A2459:52
1M90:A1408:A1452
3CPW:02206:02211
3CCV:01052:0554
1VQN:920:92
3OXE:B83:A40
3CCQ:02503:02655
3OHC:A309:A1411
3OWI:A83:B40
1YIJ:0219:0654
3G6E:02503:02655
3U5D:445:460
1YIJ:0986:0926
1VQ4:02503:02655
3G6E:02113:01889
1NJI:A44:A59
1N8R:A2141:A2202
2VQE:A1066:A1146
3OHZ:A976:A1105
2H0W:B52:B70
3OI1:A1820:A1844
1YJN:0219:0654
1YJW:02113:01889
3CCE:02113:01889
1VQK:084:070
3CMA:01052:0554
1YJN:01052:0554
2OTL:02503:02655
3G6E:01052:0554
3OHZ:A1820:A1844
1S72:02113:01889
1VQN:02503:02655
1YIT:0219:0654
1K8A:A2503:A2655
3OI0:A309:A1411
3OHY:A309:A1411
1VQ5:0446:0451
1VQM:02113:01889
3KNK:A1746:A1727
1VQP:920:92
3G71:02503:02655
1KD1:A44:A59
1YJ9:0986:0926
1VQ6:02074:01868
3KNK:A952:A990
1S72:0219:0654
3CCU:02074:01868
3OXD:B82:A40
1VQK:02503:02655
1Q86:A446:A451
1VQ5:01052:0554
3CME:02021:0524
2J02:A546:A552
1FFK:01856:01868
1VQL:02503:02655
2QA4:0446:0451
3CCL:01408:01452
3CD6:920:92
1YI2:0986:0926
3CME:02501:0520
1YI2:0446:0451
3CC4:02074:01868
1JJ2:01408:01452
3CCJ:02141:02202
1Q81:A446:A451
1VBY:B29:B66
3CCU:0401:0181
3CCL:01308:0437
1KD1:A2503:A2655
1YIT:01408:01452
3OHZ:A2399:A1078
1FFK:01454:01527
1QVG:02503:02655
3CCM:02224:0724
2QEX:01408:01452
2GCS:B52:B70
3CPW:0219:0654
3CCM:0729:0686
1SJ4:R29:R66
1YI2:01408:01452
3CC4:920:92
1NJI:A1308:A437
3G71:0401:0181
2OTL:0219:0654
1Q81:A2503:A2655
1SJF:B30:B67
3PDR:A136:A73
3CPW:0446:0451
1JJ2:0446:0451
1YJ9:0401:0181
1VQ6:01308:0437
3CC7:0446:0451
1VQO:0446:0451
1YHQ:0446:0451
3G71:0446:0451
1YIT:0446:0451
3F1H:A2021:A1000
Closest classifer groups: show all      show selected
Group Members RMSD
bp/SS_tran 3496 0.123
special/SH_cis 1 0.300
special/HS_cis 1 0.300
base-ribose/W_6BR 925 0.446
base-ribose/H_0BR 730 0.448
bp/HS_tran 7533 0.495
bp/SH_tran 142 0.519
bp/SH_cis 1144 0.571
bp/HS_cis 1144 0.583
bp/WS_tran 157 0.697

Extra

PDB:download
Reference image (generated by PyMOL):
pymol image
show in jmol
All members (generated by PyMOL):
pymol image
show in jmol