ClaRNA

Doublet Group distance statistics: 25971

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Distances from reference structure (by RMSD)

1, 91, 155, 96, 16, 13, 8, 4, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N2 B 0, 1.178, 2.687, 4.197, 4.541 max_d=4.541 avg_d=2.687 std_dev=1.510
N2 A 0, 1.151, 2.761, 4.371, 4.538 max_d=4.538 avg_d=2.761 std_dev=1.610
N3 B 0, 0.966, 2.674, 4.382, 4.124 max_d=4.124 avg_d=2.674 std_dev=1.708
N3 A 0, 0.965, 2.697, 4.428, 4.088 max_d=4.088 avg_d=2.697 std_dev=1.731
C2 B 0, 1.119, 3.010, 4.902, 4.815 max_d=4.815 avg_d=3.010 std_dev=1.892
C2 A 0, 1.110, 3.051, 4.991, 4.819 max_d=4.819 avg_d=3.051 std_dev=1.941
C4 B 0, 1.404, 4.388, 7.373, 6.702 max_d=6.702 avg_d=4.388 std_dev=2.985
C4 A 0, 1.407, 4.397, 7.387, 6.756 max_d=6.756 avg_d=4.397 std_dev=2.990
N1 B 0, 1.604, 4.785, 7.966, 7.499 max_d=7.499 avg_d=4.785 std_dev=3.181
N1 A 0, 1.595, 4.797, 7.999, 7.432 max_d=7.432 avg_d=4.797 std_dev=3.202
O2' A 0, 2.253, 5.819, 9.386, 9.002 max_d=9.002 avg_d=5.819 std_dev=3.566
N9 B 0, 1.830, 5.525, 9.221, 8.354 max_d=8.354 avg_d=5.525 std_dev=3.695
N9 A 0, 1.815, 5.517, 9.218, 8.535 max_d=8.535 avg_d=5.517 std_dev=3.701
C1' A 0, 1.852, 5.563, 9.274, 8.741 max_d=8.741 avg_d=5.563 std_dev=3.711
O2' B 0, 2.345, 6.072, 9.799, 9.853 max_d=9.853 avg_d=6.072 std_dev=3.727
C1' B 0, 1.846, 5.598, 9.349, 8.470 max_d=8.470 avg_d=5.598 std_dev=3.752
C2' B 0, 2.277, 6.158, 10.040, 9.671 max_d=9.671 avg_d=6.158 std_dev=3.882
C2' A 0, 2.108, 6.027, 9.946, 9.516 max_d=9.516 avg_d=6.027 std_dev=3.919
C5 B 0, 1.975, 5.911, 9.847, 8.858 max_d=8.858 avg_d=5.911 std_dev=3.936
C5 A 0, 1.935, 5.895, 9.855, 8.832 max_d=8.832 avg_d=5.895 std_dev=3.960
C6 B 0, 2.041, 6.135, 10.229, 9.292 max_d=9.292 avg_d=6.135 std_dev=4.094
C6 A 0, 2.011, 6.118, 10.225, 9.235 max_d=9.235 avg_d=6.118 std_dev=4.107
O4' B 0, 2.580, 7.058, 11.535, 11.173 max_d=11.173 avg_d=7.058 std_dev=4.478
O4' A 0, 2.469, 7.064, 11.659, 11.316 max_d=11.316 avg_d=7.064 std_dev=4.595
C8 B 0, 2.499, 7.248, 11.997, 10.814 max_d=10.814 avg_d=7.248 std_dev=4.749
O3' A 0, 3.519, 8.284, 13.050, 12.711 max_d=12.711 avg_d=8.284 std_dev=4.766
C3' A 0, 3.001, 7.775, 12.549, 11.822 max_d=11.822 avg_d=7.775 std_dev=4.774
C3' B 0, 3.069, 7.849, 12.629, 11.807 max_d=11.807 avg_d=7.849 std_dev=4.780
C8 A 0, 2.455, 7.237, 12.019, 10.969 max_d=10.969 avg_d=7.237 std_dev=4.782
O3' B 0, 3.626, 8.506, 13.387, 13.622 max_d=13.622 avg_d=8.506 std_dev=4.881
N7 B 0, 2.611, 7.520, 12.430, 11.162 max_d=11.162 avg_d=7.520 std_dev=4.909
N7 A 0, 2.542, 7.493, 12.445, 11.215 max_d=11.215 avg_d=7.493 std_dev=4.952
O6 B 0, 2.620, 7.723, 12.826, 11.650 max_d=11.650 avg_d=7.723 std_dev=5.103
O6 A 0, 2.583, 7.691, 12.798, 11.557 max_d=11.557 avg_d=7.691 std_dev=5.107
C4' B 0, 3.191, 8.411, 13.630, 12.865 max_d=12.865 avg_d=8.411 std_dev=5.219
C4' A 0, 3.122, 8.398, 13.673, 12.863 max_d=12.863 avg_d=8.398 std_dev=5.275
O5' B 0, 4.372, 10.461, 16.550, 15.709 max_d=15.709 avg_d=10.461 std_dev=6.089
C5' B 0, 4.054, 10.146, 16.238, 15.492 max_d=15.492 avg_d=10.146 std_dev=6.092
C5' A 0, 3.917, 10.261, 16.605, 15.589 max_d=15.589 avg_d=10.261 std_dev=6.344
O5' A 0, 4.027, 10.621, 17.215, 16.447 max_d=16.447 avg_d=10.621 std_dev=6.594
P B 0, 5.289, 12.290, 19.292, 18.409 max_d=18.409 avg_d=12.290 std_dev=7.002
OP2 B 0, 5.715, 12.728, 19.740, 18.795 max_d=18.795 avg_d=12.728 std_dev=7.013
P A 0, 4.777, 12.063, 19.350, 18.441 max_d=18.441 avg_d=12.063 std_dev=7.286
OP2 A 0, 4.949, 12.334, 19.719, 18.831 max_d=18.831 avg_d=12.334 std_dev=7.385
OP1 B 0, 5.896, 13.550, 21.203, 20.688 max_d=20.688 avg_d=13.550 std_dev=7.654
OP1 A 0, 5.484, 13.274, 21.064, 20.840 max_d=20.840 avg_d=13.274 std_dev=7.790

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.01 0.02 0.06 0.02 0.01 0.04 0.05 0.04 0.01 0.01 0.03 0.36 0.01 0.35 0.03 0.46 0.41 0.24
C2 0.04 0.00 0.43 0.28 0.01 0.17 0.01 0.19 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.30 0.36 0.33 0.48 0.02 0.75 0.83 0.43
C2' 0.01 0.43 0.00 0.01 0.22 0.02 0.10 0.21 0.19 0.22 0.33 0.51 0.42 0.12 0.03 0.00 0.03 0.03 0.40 0.14 0.46 0.59 0.44
C3' 0.02 0.28 0.01 0.00 0.29 0.01 0.38 0.02 0.40 0.37 0.35 0.26 0.24 0.42 0.25 0.02 0.01 0.02 0.13 0.44 0.33 0.19 0.14
C4 0.02 0.01 0.22 0.29 0.00 0.05 0.01 0.09 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.17 0.20 0.17 0.64 0.02 0.70 1.01 0.64
C4' 0.01 0.17 0.02 0.01 0.05 0.00 0.13 0.01 0.09 0.30 0.09 0.26 0.18 0.27 0.11 0.34 0.03 0.01 0.02 0.14 0.43 0.20 0.17
C5 0.02 0.01 0.10 0.38 0.01 0.13 0.00 0.19 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.32 0.12 0.06 0.90 0.01 0.96 1.50 1.02
C5' 0.06 0.19 0.21 0.02 0.09 0.01 0.19 0.00 0.17 0.36 0.13 0.28 0.19 0.35 0.12 0.12 0.24 0.02 0.01 0.23 0.16 0.29 0.02
C6 0.02 0.01 0.19 0.40 0.01 0.09 0.01 0.17 0.00 0.01 0.01 0.02 0.01 0.01 0.02 0.29 0.14 0.13 0.89 0.01 0.98 1.56 1.03
C8 0.01 0.01 0.22 0.37 0.01 0.30 0.01 0.36 0.01 0.00 0.01 0.02 0.01 0.00 0.01 0.52 0.18 0.22 1.04 0.02 1.12 1.56 1.20
N1 0.04 0.01 0.33 0.35 0.01 0.09 0.01 0.13 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.22 0.24 0.25 0.69 0.02 0.81 1.22 0.72
N2 0.05 0.01 0.51 0.26 0.02 0.26 0.01 0.28 0.02 0.02 0.01 0.00 0.01 0.02 0.02 0.45 0.47 0.41 0.34 0.03 0.87 0.63 0.29
N3 0.04 0.01 0.42 0.24 0.01 0.18 0.01 0.19 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.31 0.38 0.33 0.41 0.02 0.70 0.67 0.33
N7 0.01 0.01 0.12 0.42 0.01 0.27 0.00 0.35 0.01 0.00 0.01 0.02 0.01 0.00 0.01 0.52 0.20 0.13 1.12 0.02 1.27 1.85 1.36
N9 0.01 0.02 0.03 0.25 0.01 0.11 0.01 0.12 0.02 0.01 0.02 0.02 0.01 0.01 0.00 0.24 0.14 0.02 0.68 0.02 0.67 0.97 0.67
O2' 0.03 0.30 0.00 0.02 0.17 0.34 0.32 0.12 0.29 0.52 0.22 0.45 0.31 0.52 0.24 0.00 0.05 0.24 0.32 0.37 0.43 0.64 0.41
O3' 0.36 0.36 0.03 0.01 0.20 0.03 0.12 0.24 0.14 0.18 0.24 0.47 0.38 0.20 0.14 0.05 0.00 0.23 0.22 0.16 0.51 0.39 0.27
O4' 0.01 0.33 0.03 0.02 0.17 0.01 0.06 0.02 0.13 0.22 0.25 0.41 0.33 0.13 0.02 0.24 0.23 0.00 0.31 0.08 0.54 0.30 0.22
O5' 0.35 0.48 0.40 0.13 0.64 0.02 0.90 0.01 0.89 1.04 0.69 0.34 0.41 1.12 0.68 0.32 0.22 0.31 0.00 1.02 0.02 0.02 0.01
O6 0.03 0.02 0.14 0.44 0.02 0.14 0.01 0.23 0.01 0.02 0.02 0.03 0.02 0.02 0.02 0.37 0.16 0.08 1.02 0.00 1.16 1.84 1.24
OP1 0.46 0.75 0.46 0.33 0.70 0.43 0.96 0.16 0.98 1.12 0.81 0.87 0.70 1.27 0.67 0.43 0.51 0.54 0.02 1.16 0.00 0.02 0.01
OP2 0.41 0.83 0.59 0.19 1.01 0.20 1.50 0.29 1.56 1.56 1.22 0.63 0.67 1.85 0.97 0.64 0.39 0.30 0.02 1.84 0.02 0.00 0.01
P 0.24 0.43 0.44 0.14 0.64 0.17 1.02 0.02 1.03 1.20 0.72 0.29 0.33 1.36 0.67 0.41 0.27 0.22 0.01 1.24 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.31 0.27 0.49 0.33 0.28 0.79 0.28 1.12 0.29 0.29 0.28 0.28 0.28 0.29 0.29 0.80 0.86 0.96 1.13 0.30 1.30 0.91 1.08
C2 0.21 0.19 0.62 0.37 0.17 0.80 0.16 1.20 0.17 0.18 0.18 0.23 0.18 0.17 0.18 1.15 0.93 0.88 1.12 0.17 1.25 0.87 1.05
C2' 0.48 0.64 1.05 0.72 0.62 0.32 0.69 0.53 0.73 0.64 0.71 0.61 0.57 0.69 0.58 1.36 1.10 0.50 0.59 0.77 1.18 0.93 0.80
C3' 0.46 0.58 0.68 0.49 0.60 0.60 0.71 0.90 0.77 0.66 0.71 0.52 0.51 0.74 0.57 1.09 0.99 0.88 1.00 0.84 1.47 1.11 1.14
C4 0.20 0.16 0.59 0.36 0.16 0.78 0.16 1.17 0.17 0.17 0.18 0.19 0.15 0.17 0.17 1.07 0.94 0.91 1.12 0.18 1.29 0.88 1.07
C4' 0.66 0.82 0.38 0.46 0.79 1.03 0.87 1.42 0.93 0.81 0.91 0.79 0.74 0.87 0.75 0.71 0.91 1.27 1.50 0.97 1.69 1.32 1.50
C5 0.22 0.16 0.65 0.45 0.16 0.77 0.16 1.18 0.17 0.19 0.17 0.19 0.15 0.17 0.19 1.21 1.04 0.86 1.11 0.18 1.30 0.88 1.07
C5' 0.66 0.90 0.44 0.49 0.85 1.06 0.98 1.48 1.09 0.88 1.06 0.86 0.78 0.99 0.79 0.82 0.96 1.29 1.57 1.18 1.79 1.41 1.59
C6 0.29 0.17 0.69 0.52 0.19 0.77 0.17 1.19 0.16 0.23 0.16 0.20 0.18 0.19 0.23 1.31 1.11 0.80 1.08 0.16 1.29 0.88 1.05
C8 0.21 0.21 0.60 0.40 0.20 0.77 0.22 1.16 0.24 0.21 0.25 0.24 0.18 0.22 0.20 1.08 0.98 0.90 1.12 0.27 1.33 0.89 1.08
N1 0.29 0.19 0.68 0.47 0.21 0.78 0.19 1.20 0.17 0.23 0.18 0.22 0.22 0.20 0.25 1.30 1.07 0.81 1.09 0.17 1.26 0.87 1.04
N2 0.23 0.27 0.64 0.36 0.23 0.83 0.23 1.22 0.25 0.22 0.26 0.30 0.26 0.22 0.22 1.14 0.85 0.89 1.12 0.25 1.21 0.86 1.04
N3 0.19 0.15 0.58 0.33 0.15 0.80 0.15 1.17 0.15 0.16 0.16 0.18 0.15 0.15 0.17 1.00 0.88 0.92 1.13 0.16 1.26 0.88 1.06
N7 0.22 0.18 0.65 0.46 0.17 0.77 0.18 1.18 0.20 0.20 0.21 0.21 0.16 0.19 0.19 1.20 1.05 0.87 1.11 0.23 1.33 0.89 1.07
N9 0.22 0.21 0.56 0.35 0.21 0.78 0.22 1.15 0.23 0.22 0.23 0.23 0.20 0.22 0.21 0.98 0.92 0.92 1.13 0.25 1.31 0.89 1.08
O2' 0.48 0.99 0.96 0.64 0.81 0.35 0.99 0.51 1.18 0.79 1.20 1.01 0.76 0.95 0.68 1.12 0.93 0.54 0.58 1.29 1.15 1.01 0.80
O3' 0.98 1.09 0.45 0.55 1.13 1.09 1.25 1.38 1.30 1.20 1.22 0.99 1.04 1.28 1.10 0.78 0.93 1.44 1.51 1.36 1.87 1.53 1.62
O4' 0.70 0.79 0.39 0.57 0.76 1.20 0.78 1.61 0.80 0.75 0.80 0.80 0.75 0.77 0.73 0.57 0.95 1.38 1.64 0.79 1.72 1.33 1.58
O5' 0.43 0.75 0.67 0.53 0.69 0.66 0.92 1.08 1.10 0.76 1.04 0.66 0.57 0.93 0.61 1.13 1.05 0.92 1.19 1.29 1.54 1.17 1.26
O6 0.35 0.18 0.73 0.61 0.22 0.75 0.20 1.18 0.17 0.27 0.17 0.21 0.21 0.23 0.28 1.39 1.20 0.75 1.06 0.17 1.29 0.90 1.05
OP1 1.53 1.95 1.23 1.34 1.95 1.65 2.28 1.97 2.52 2.07 2.38 1.71 1.73 2.31 1.83 1.33 1.76 1.92 2.11 2.79 2.23 2.18 2.14
OP2 0.59 1.12 0.78 0.58 1.06 0.64 1.44 0.95 1.74 1.17 1.59 0.94 0.85 1.47 0.91 1.08 1.05 0.93 1.14 2.08 1.20 1.13 1.09
P 0.76 1.22 0.77 0.75 1.18 0.89 1.50 1.26 1.76 1.28 1.63 1.05 0.98 1.53 1.05 1.13 1.28 1.16 1.40 2.03 1.64 1.44 1.44

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.01 0.02 0.10 0.02 0.02 0.04 0.06 0.04 0.02 0.01 0.02 0.35 0.01 0.23 0.03 0.68 0.47 0.31
C2 0.04 0.00 0.47 0.27 0.01 0.48 0.01 0.89 0.01 0.02 0.01 0.01 0.01 0.02 0.02 0.60 0.36 0.58 1.05 0.02 1.19 0.97 1.05
C2' 0.01 0.47 0.00 0.01 0.25 0.02 0.14 0.24 0.23 0.22 0.38 0.55 0.45 0.10 0.03 0.01 0.04 0.02 0.46 0.19 1.02 0.68 0.62
C3' 0.02 0.27 0.01 0.00 0.29 0.01 0.41 0.03 0.42 0.41 0.36 0.24 0.22 0.47 0.27 0.03 0.01 0.03 0.32 0.48 0.61 0.50 0.34
C4 0.02 0.01 0.25 0.29 0.00 0.29 0.01 0.56 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.35 0.19 0.30 0.77 0.02 0.94 0.83 0.75
C4' 0.01 0.48 0.02 0.01 0.29 0.00 0.27 0.01 0.34 0.27 0.43 0.56 0.43 0.26 0.15 0.34 0.04 0.01 0.02 0.33 0.29 0.27 0.09
C5 0.02 0.01 0.14 0.41 0.01 0.27 0.00 0.52 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.36 0.16 0.14 0.79 0.02 1.05 0.97 0.86
C5' 0.10 0.89 0.24 0.03 0.56 0.01 0.52 0.00 0.68 0.31 0.84 1.01 0.77 0.36 0.25 0.11 0.21 0.02 0.01 0.67 0.21 0.27 0.02
C6 0.02 0.01 0.23 0.42 0.01 0.34 0.01 0.68 0.00 0.02 0.01 0.02 0.01 0.01 0.02 0.41 0.19 0.26 0.95 0.01 1.20 1.10 1.06
C8 0.02 0.02 0.22 0.41 0.01 0.27 0.01 0.31 0.02 0.00 0.01 0.02 0.01 0.00 0.01 0.48 0.25 0.29 0.42 0.03 0.93 0.73 0.53
N1 0.04 0.01 0.38 0.36 0.01 0.43 0.01 0.84 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.51 0.25 0.45 1.06 0.01 1.26 1.08 1.13
N2 0.06 0.01 0.55 0.24 0.02 0.56 0.02 1.01 0.02 0.02 0.01 0.00 0.01 0.02 0.03 0.74 0.49 0.69 1.11 0.02 1.27 0.99 1.12
N3 0.04 0.01 0.45 0.22 0.01 0.43 0.01 0.77 0.01 0.01 0.01 0.01 0.00 0.01 0.02 0.56 0.39 0.57 0.91 0.02 1.02 0.84 0.86
N7 0.02 0.02 0.10 0.47 0.01 0.26 0.01 0.36 0.01 0.00 0.01 0.02 0.01 0.00 0.01 0.45 0.28 0.15 0.58 0.03 1.01 0.93 0.72
N9 0.01 0.02 0.03 0.27 0.01 0.15 0.01 0.25 0.02 0.01 0.02 0.03 0.02 0.01 0.00 0.23 0.12 0.02 0.45 0.02 0.79 0.64 0.46
O2' 0.02 0.60 0.01 0.03 0.35 0.34 0.36 0.11 0.41 0.48 0.51 0.74 0.56 0.45 0.23 0.00 0.06 0.27 0.36 0.42 0.93 0.71 0.53
O3' 0.35 0.36 0.04 0.01 0.19 0.04 0.16 0.21 0.19 0.25 0.25 0.49 0.39 0.28 0.12 0.06 0.00 0.24 0.35 0.24 0.55 0.67 0.41
O4' 0.01 0.58 0.02 0.03 0.30 0.01 0.14 0.02 0.26 0.29 0.45 0.69 0.57 0.15 0.02 0.27 0.24 0.00 0.14 0.19 0.46 0.50 0.32
O5' 0.23 1.05 0.46 0.32 0.77 0.02 0.79 0.01 0.95 0.42 1.06 1.11 0.91 0.58 0.45 0.36 0.35 0.14 0.00 0.94 0.02 0.02 0.01
O6 0.03 0.02 0.19 0.48 0.02 0.33 0.02 0.67 0.01 0.03 0.01 0.02 0.02 0.03 0.02 0.42 0.24 0.19 0.94 0.00 1.27 1.17 1.12
OP1 0.68 1.19 1.02 0.61 0.94 0.29 1.05 0.21 1.20 0.93 1.26 1.27 1.02 1.01 0.79 0.93 0.55 0.46 0.02 1.27 0.00 0.02 0.01
OP2 0.47 0.97 0.68 0.50 0.83 0.27 0.97 0.27 1.10 0.73 1.08 0.99 0.84 0.93 0.64 0.71 0.67 0.50 0.02 1.17 0.02 0.00 0.01
P 0.31 1.05 0.62 0.34 0.75 0.09 0.86 0.02 1.06 0.53 1.13 1.12 0.86 0.72 0.46 0.53 0.41 0.32 0.01 1.12 0.01 0.01 0.00