ClaRNA

Doublet Group distance statistics: 26016

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Distances from reference structure (by RMSD)

1, 54, 0, 2, 0, 0, 0, 0, 2, 0, 1, 2, 44, 30, 1, 6, 4, 3, 3, 171,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 B 0, 0.457, 0.985, 1.512, 2.807 max_d=2.807 avg_d=0.985 std_dev=0.528
N3 A 0, 0.536, 1.200, 1.863, 3.475 max_d=3.475 avg_d=1.200 std_dev=0.664
C4 A 0, 0.151, 0.816, 1.481, 3.354 max_d=3.354 avg_d=0.816 std_dev=0.665
N1 B 0, 0.294, 0.989, 1.684, 2.957 max_d=2.957 avg_d=0.989 std_dev=0.695
N9 A 0, 0.639, 1.468, 2.298, 4.194 max_d=4.194 avg_d=1.468 std_dev=0.830
C2 B 0, 0.429, 1.287, 2.146, 4.589 max_d=4.589 avg_d=1.287 std_dev=0.858
C5 A 0, 0.304, 1.172, 2.039, 4.794 max_d=4.794 avg_d=1.172 std_dev=0.867
C6 A 0, 0.595, 1.516, 2.437, 4.840 max_d=4.840 avg_d=1.516 std_dev=0.921
N3 B 0, 0.412, 1.371, 2.331, 5.597 max_d=5.597 avg_d=1.371 std_dev=0.960
C2 A 0, 0.676, 1.640, 2.605, 3.285 max_d=3.285 avg_d=1.640 std_dev=0.964
C1' A 0, 0.925, 1.923, 2.921, 4.444 max_d=4.444 avg_d=1.923 std_dev=0.998
O4' B 0, 1.138, 2.149, 3.161, 3.742 max_d=3.742 avg_d=2.149 std_dev=1.011
C5 B 0, 0.719, 1.754, 2.789, 4.202 max_d=4.202 avg_d=1.754 std_dev=1.035
N1 A 0, 0.682, 1.738, 2.795, 3.491 max_d=3.491 avg_d=1.738 std_dev=1.057
C4 B 0, 0.778, 1.939, 3.100, 5.246 max_d=5.246 avg_d=1.939 std_dev=1.161
N7 A 0, 0.763, 1.951, 3.139, 6.703 max_d=6.703 avg_d=1.951 std_dev=1.188
C8 A 0, 0.836, 2.055, 3.274, 5.885 max_d=5.885 avg_d=2.055 std_dev=1.219
C1' B 0, 0.743, 1.967, 3.190, 3.806 max_d=3.806 avg_d=1.967 std_dev=1.224
O2 B 0, 0.894, 2.147, 3.400, 6.288 max_d=6.288 avg_d=2.147 std_dev=1.253
N6 A 0, 0.838, 2.137, 3.436, 6.991 max_d=6.991 avg_d=2.137 std_dev=1.299
O4' A 0, 1.112, 2.447, 3.783, 7.099 max_d=7.099 avg_d=2.447 std_dev=1.336
O5' B 0, 1.244, 2.681, 4.119, 6.433 max_d=6.433 avg_d=2.681 std_dev=1.437
C5' B 0, 1.608, 3.078, 4.548, 6.381 max_d=6.381 avg_d=3.078 std_dev=1.470
C4' B 0, 1.424, 2.941, 4.458, 5.595 max_d=5.595 avg_d=2.941 std_dev=1.517
C2' A 0, 1.021, 2.573, 4.125, 5.096 max_d=5.096 avg_d=2.573 std_dev=1.552
O4 B 0, 1.112, 2.828, 4.543, 6.778 max_d=6.778 avg_d=2.828 std_dev=1.716
P B 0, 1.466, 3.219, 4.972, 7.832 max_d=7.832 avg_d=3.219 std_dev=1.753
C3' A 0, 1.414, 3.185, 4.956, 6.304 max_d=6.304 avg_d=3.185 std_dev=1.771
C4' A 0, 1.354, 3.180, 5.006, 8.175 max_d=8.175 avg_d=3.180 std_dev=1.826
C3' B 0, 1.201, 3.063, 4.924, 6.317 max_d=6.317 avg_d=3.063 std_dev=1.861
O2' A 0, 1.030, 2.919, 4.807, 5.527 max_d=5.527 avg_d=2.919 std_dev=1.889
O3' A 0, 1.514, 3.415, 5.315, 7.714 max_d=7.714 avg_d=3.415 std_dev=1.900
C2' B 0, 0.621, 2.593, 4.565, 5.899 max_d=5.899 avg_d=2.593 std_dev=1.972
OP2 B 0, 1.531, 3.667, 5.803, 10.020 max_d=10.020 avg_d=3.667 std_dev=2.136
OP1 B 0, 2.131, 4.282, 6.432, 9.680 max_d=9.680 avg_d=4.282 std_dev=2.150
C5' A 0, 1.794, 4.013, 6.232, 10.062 max_d=10.062 avg_d=4.013 std_dev=2.219
O5' A 0, 1.906, 4.310, 6.714, 11.243 max_d=11.243 avg_d=4.310 std_dev=2.404
O2' B 0, 1.253, 3.835, 6.416, 8.279 max_d=8.279 avg_d=3.835 std_dev=2.581
O3' B 0, 1.570, 4.282, 6.994, 8.775 max_d=8.775 avg_d=4.282 std_dev=2.712
OP2 A 0, 2.453, 5.339, 8.226, 14.580 max_d=14.580 avg_d=5.339 std_dev=2.887
P A 0, 2.367, 5.418, 8.469, 13.818 max_d=13.818 avg_d=5.418 std_dev=3.051
OP1 A 0, 2.290, 5.927, 9.564, 14.078 max_d=14.078 avg_d=5.927 std_dev=3.637

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.02 0.02 0.08 0.03 0.02 0.04 0.04 0.03 0.01 0.01 0.02 0.34 0.01 0.28 0.52 0.31 0.25
C2 0.04 0.00 0.45 0.31 0.01 0.34 0.01 0.52 0.01 0.02 0.01 0.01 0.02 0.02 0.02 0.38 0.29 0.50 0.47 0.67 0.63 0.48
C2' 0.01 0.45 0.00 0.01 0.24 0.02 0.13 0.23 0.22 0.23 0.36 0.44 0.16 0.12 0.03 0.00 0.03 0.02 0.52 0.93 0.60 0.65
C3' 0.02 0.31 0.01 0.00 0.29 0.01 0.39 0.02 0.40 0.40 0.35 0.27 0.44 0.45 0.26 0.03 0.01 0.02 0.35 0.73 0.34 0.43
C4 0.02 0.01 0.24 0.29 0.00 0.12 0.01 0.24 0.01 0.01 0.02 0.01 0.02 0.01 0.01 0.16 0.15 0.26 0.38 0.63 0.57 0.37
C4' 0.02 0.34 0.02 0.01 0.12 0.00 0.11 0.01 0.12 0.35 0.23 0.33 0.13 0.28 0.10 0.33 0.03 0.01 0.02 0.39 0.32 0.13
C5 0.02 0.01 0.13 0.39 0.01 0.11 0.00 0.21 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.29 0.14 0.13 0.56 0.86 0.84 0.61
C5' 0.08 0.52 0.23 0.02 0.24 0.01 0.21 0.00 0.27 0.43 0.41 0.48 0.26 0.37 0.13 0.12 0.23 0.02 0.01 0.38 0.38 0.02
C6 0.03 0.01 0.22 0.40 0.01 0.12 0.01 0.27 0.00 0.02 0.01 0.02 0.01 0.02 0.02 0.24 0.15 0.24 0.51 0.83 0.86 0.58
C8 0.02 0.02 0.23 0.40 0.01 0.35 0.01 0.43 0.02 0.00 0.02 0.01 0.04 0.00 0.01 0.58 0.24 0.27 0.90 1.11 0.99 0.93
N1 0.04 0.01 0.36 0.35 0.02 0.23 0.01 0.41 0.01 0.02 0.00 0.02 0.02 0.02 0.02 0.26 0.19 0.39 0.45 0.71 0.72 0.47
N3 0.04 0.01 0.44 0.27 0.01 0.33 0.01 0.48 0.02 0.01 0.02 0.00 0.02 0.01 0.01 0.38 0.33 0.49 0.42 0.61 0.54 0.41
N6 0.03 0.02 0.16 0.44 0.02 0.13 0.02 0.26 0.01 0.04 0.02 0.02 0.00 0.05 0.03 0.33 0.22 0.17 0.62 1.00 1.05 0.73
N7 0.01 0.02 0.12 0.45 0.01 0.28 0.00 0.37 0.02 0.00 0.02 0.01 0.05 0.00 0.01 0.53 0.27 0.14 0.88 1.19 1.15 0.97
N9 0.01 0.02 0.03 0.26 0.01 0.10 0.01 0.13 0.02 0.01 0.02 0.01 0.03 0.01 0.00 0.24 0.11 0.02 0.48 0.68 0.54 0.45
O2' 0.02 0.38 0.00 0.03 0.16 0.33 0.29 0.12 0.24 0.58 0.26 0.38 0.33 0.53 0.24 0.00 0.07 0.24 0.47 0.99 0.66 0.64
O3' 0.34 0.29 0.03 0.01 0.15 0.03 0.14 0.23 0.15 0.24 0.19 0.33 0.22 0.27 0.11 0.07 0.00 0.25 0.37 0.78 0.46 0.45
O4' 0.01 0.50 0.02 0.02 0.26 0.01 0.13 0.02 0.24 0.27 0.39 0.49 0.17 0.14 0.02 0.24 0.25 0.00 0.17 0.27 0.39 0.16
O5' 0.28 0.47 0.52 0.35 0.38 0.02 0.56 0.01 0.51 0.90 0.45 0.42 0.62 0.88 0.48 0.47 0.37 0.17 0.00 0.02 0.02 0.01
OP1 0.52 0.67 0.93 0.73 0.63 0.39 0.86 0.38 0.83 1.11 0.71 0.61 1.00 1.19 0.68 0.99 0.78 0.27 0.02 0.00 0.02 0.01
OP2 0.31 0.63 0.60 0.34 0.57 0.32 0.84 0.38 0.86 0.99 0.72 0.54 1.05 1.15 0.54 0.66 0.46 0.39 0.02 0.02 0.00 0.01
P 0.25 0.48 0.65 0.43 0.37 0.13 0.61 0.02 0.58 0.93 0.47 0.41 0.73 0.97 0.45 0.64 0.45 0.16 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 1.97 2.07 1.90 1.65 2.15 1.92 1.94 1.61 1.73 1.87 2.16 2.22 2.14 1.82 2.37 2.00 0.95 0.88 1.18 0.69
C2 1.72 1.85 1.38 1.25 1.83 1.47 1.75 1.18 1.71 1.76 1.86 1.90 1.41 1.36 1.85 1.81 0.78 0.56 0.79 0.31
C2' 2.37 2.37 2.38 2.23 2.32 2.45 2.07 2.15 1.96 2.18 2.40 2.58 2.65 2.44 2.54 2.42 1.49 1.31 1.44 1.10
C3' 2.09 2.24 2.16 1.85 2.32 2.03 2.03 1.68 1.79 1.97 2.35 2.46 2.51 2.06 2.61 2.03 1.02 1.09 1.34 0.83
C4 1.88 1.95 1.67 1.51 1.88 1.76 1.72 1.42 1.64 1.80 1.96 2.09 1.83 1.71 1.97 1.96 0.82 0.68 0.84 0.42
C4' 1.92 2.17 1.98 1.52 2.29 1.66 2.02 1.28 1.75 1.88 2.30 2.37 2.30 1.64 2.55 1.77 0.70 0.90 1.30 0.74
C5 2.08 2.17 1.81 1.64 2.01 1.83 1.81 1.40 1.76 1.99 2.14 2.35 2.02 1.88 2.07 2.10 0.83 0.57 0.79 0.38
C5' 1.94 2.21 2.03 1.55 2.25 1.64 1.97 1.24 1.73 1.90 2.32 2.45 2.35 1.66 2.49 1.77 0.78 0.96 1.36 0.86
C6 2.18 2.35 1.83 1.65 2.18 1.81 1.98 1.35 1.94 2.16 2.32 2.51 2.03 1.88 2.21 2.16 0.88 0.50 0.89 0.44
C8 2.07 2.13 1.93 1.73 2.01 1.94 1.76 1.53 1.66 1.91 2.13 2.36 2.21 2.00 2.16 2.10 0.85 0.69 0.87 0.46
N1 2.03 2.22 1.63 1.47 2.13 1.65 2.00 1.24 1.95 2.08 2.22 2.31 1.74 1.63 2.14 2.03 0.86 0.50 0.92 0.44
N3 1.68 1.76 1.45 1.31 1.78 1.58 1.68 1.34 1.59 1.66 1.80 1.84 1.52 1.44 1.86 1.79 0.82 0.71 0.87 0.44
N6 2.41 2.65 2.05 1.83 2.45 1.93 2.19 1.39 2.11 2.39 2.63 2.85 2.32 2.10 2.51 2.30 0.96 0.50 1.05 0.57
N7 2.16 2.24 1.95 1.75 2.05 1.94 1.79 1.47 1.73 2.02 2.21 2.47 2.23 2.04 2.16 2.16 0.84 0.60 0.80 0.40
N9 1.95 2.01 1.82 1.62 1.98 1.87 1.77 1.53 1.64 1.82 2.04 2.19 2.04 1.84 2.13 2.01 0.87 0.76 0.95 0.53
O2' 2.72 2.69 2.71 2.56 2.66 2.77 2.41 2.43 2.29 2.51 2.72 2.88 2.97 2.74 2.89 2.74 1.82 1.48 1.79 1.43
O3' 2.02 2.31 2.17 1.75 2.59 1.80 2.28 1.40 1.90 2.00 2.52 2.49 2.58 1.96 2.96 1.80 0.90 1.16 1.52 0.99
O4' 1.76 2.02 1.77 1.32 2.17 1.52 1.95 1.15 1.67 1.76 2.15 2.17 2.02 1.43 2.40 1.67 0.62 0.91 1.29 0.77
O5' 1.99 2.13 1.97 1.66 2.07 1.85 1.82 1.51 1.65 1.86 2.17 2.40 2.28 1.86 2.28 1.97 0.95 0.99 1.20 0.92
OP1 2.07 2.29 2.17 1.88 2.34 1.92 2.07 1.58 1.83 2.01 2.38 2.53 2.44 2.11 2.61 1.97 1.13 1.07 1.24 1.06
OP2 2.23 2.35 2.02 1.77 2.20 2.05 1.95 1.69 1.84 2.09 2.35 2.64 2.31 1.97 2.38 2.27 1.15 1.15 1.17 1.06
P 2.17 2.30 2.10 1.82 2.20 2.01 1.95 1.66 1.81 2.03 2.32 2.58 2.41 2.03 2.40 2.16 1.12 1.06 1.19 1.03

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.02 0.02 0.01 0.02 0.08 0.02 0.01 0.02 0.04 0.02 0.27 0.02 0.01 0.20 0.32 0.31 0.24
C2 0.02 0.00 0.21 0.26 0.01 0.11 0.01 0.20 0.01 0.01 0.01 0.01 0.12 0.16 0.02 0.15 0.32 0.61 0.55 0.37
C2' 0.00 0.21 0.00 0.01 0.06 0.02 0.11 0.18 0.17 0.03 0.17 0.34 0.00 0.03 0.08 0.01 0.44 0.37 0.59 0.48
C3' 0.02 0.26 0.01 0.00 0.35 0.01 0.35 0.03 0.30 0.21 0.32 0.27 0.03 0.01 0.39 0.03 0.19 0.25 0.24 0.18
C4 0.02 0.01 0.06 0.35 0.00 0.12 0.01 0.18 0.01 0.01 0.01 0.02 0.26 0.20 0.00 0.05 0.40 0.88 0.83 0.45
C4' 0.01 0.11 0.02 0.01 0.12 0.00 0.20 0.01 0.20 0.07 0.10 0.21 0.28 0.02 0.13 0.01 0.02 0.14 0.26 0.03
C5 0.02 0.01 0.11 0.35 0.01 0.20 0.00 0.26 0.01 0.01 0.01 0.02 0.35 0.25 0.01 0.10 0.46 0.94 0.90 0.52
C5' 0.08 0.20 0.18 0.03 0.18 0.01 0.26 0.00 0.25 0.11 0.19 0.34 0.11 0.20 0.20 0.02 0.01 0.23 0.42 0.02
C6 0.02 0.01 0.17 0.30 0.01 0.20 0.01 0.25 0.00 0.01 0.01 0.02 0.33 0.19 0.02 0.15 0.42 0.77 0.72 0.46
N1 0.01 0.01 0.03 0.21 0.01 0.07 0.01 0.11 0.01 0.00 0.01 0.02 0.16 0.10 0.02 0.02 0.25 0.54 0.49 0.29
N3 0.02 0.01 0.17 0.32 0.01 0.10 0.01 0.19 0.01 0.01 0.00 0.01 0.17 0.14 0.01 0.12 0.36 0.76 0.69 0.41
O2 0.04 0.01 0.34 0.27 0.02 0.21 0.02 0.34 0.02 0.02 0.01 0.00 0.24 0.31 0.03 0.25 0.45 0.62 0.59 0.51
O2' 0.02 0.12 0.00 0.03 0.26 0.28 0.35 0.11 0.33 0.16 0.17 0.24 0.00 0.07 0.27 0.18 0.31 0.25 0.61 0.37
O3' 0.27 0.16 0.03 0.01 0.20 0.02 0.25 0.20 0.19 0.10 0.14 0.31 0.07 0.00 0.25 0.18 0.26 0.58 0.48 0.34
O4 0.02 0.02 0.08 0.39 0.00 0.13 0.01 0.20 0.02 0.02 0.01 0.03 0.27 0.25 0.00 0.06 0.43 0.97 0.92 0.50
O4' 0.01 0.15 0.01 0.03 0.05 0.01 0.10 0.02 0.15 0.02 0.12 0.25 0.18 0.18 0.06 0.00 0.10 0.27 0.20 0.13
O5' 0.20 0.32 0.44 0.19 0.40 0.02 0.46 0.01 0.42 0.25 0.36 0.45 0.31 0.26 0.43 0.10 0.00 0.03 0.02 0.01
OP1 0.32 0.61 0.37 0.25 0.88 0.14 0.94 0.23 0.77 0.54 0.76 0.62 0.25 0.58 0.97 0.27 0.03 0.00 0.02 0.01
OP2 0.31 0.55 0.59 0.24 0.83 0.26 0.90 0.42 0.72 0.49 0.69 0.59 0.61 0.48 0.92 0.20 0.02 0.02 0.00 0.01
P 0.24 0.37 0.48 0.18 0.45 0.03 0.52 0.02 0.46 0.29 0.41 0.51 0.37 0.34 0.50 0.13 0.01 0.01 0.01 0.00