ClaRNA

Doublet Group distance statistics: 2622

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Distances from reference structure (by RMSD)

16, 91, 146, 106, 71, 40, 10, 2, 1, 1, 5, 2, 0, 0, 0, 1, 6, 2, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 A 0, 0.033, 0.117, 0.201, 0.747 max_d=0.747 avg_d=0.117 std_dev=0.084
C4 B 0, 0.033, 0.126, 0.219, 0.794 max_d=0.794 avg_d=0.126 std_dev=0.093
N3 B 0, 0.067, 0.188, 0.308, 0.749 max_d=0.749 avg_d=0.188 std_dev=0.120
N9 B 0, 0.055, 0.187, 0.318, 1.026 max_d=1.026 avg_d=0.187 std_dev=0.131
C2 B 0, 0.080, 0.225, 0.371, 0.791 max_d=0.791 avg_d=0.225 std_dev=0.145
C5 B 0, 0.081, 0.240, 0.400, 1.045 max_d=1.045 avg_d=0.240 std_dev=0.160
N1 B 0, 0.094, 0.254, 0.414, 1.020 max_d=1.020 avg_d=0.254 std_dev=0.160
C1' B 0, 0.127, 0.301, 0.475, 1.073 max_d=1.073 avg_d=0.301 std_dev=0.174
C6 B 0, 0.117, 0.292, 0.468, 1.246 max_d=1.246 avg_d=0.292 std_dev=0.175
C8 B 0, 0.118, 0.318, 0.518, 1.293 max_d=1.293 avg_d=0.318 std_dev=0.200
N7 B 0, 0.134, 0.371, 0.607, 1.464 max_d=1.464 avg_d=0.371 std_dev=0.236
C6 A 0, 0.176, 0.423, 0.671, 1.578 max_d=1.578 avg_d=0.423 std_dev=0.248
N6 B 0, 0.197, 0.452, 0.707, 1.794 max_d=1.794 avg_d=0.452 std_dev=0.255
C5 A 0, 0.132, 0.421, 0.710, 1.667 max_d=1.667 avg_d=0.421 std_dev=0.289
N9 A 0, 0.009, 0.349, 0.688, 2.564 max_d=2.564 avg_d=0.349 std_dev=0.340
N3 A 0, 0.036, 0.403, 0.770, 2.427 max_d=2.427 avg_d=0.403 std_dev=0.367
C1' A 0, 0.013, 0.382, 0.750, 2.470 max_d=2.470 avg_d=0.382 std_dev=0.369
N6 A 0, 0.324, 0.726, 1.127, 2.455 max_d=2.455 avg_d=0.726 std_dev=0.401
N1 A 0, -0.001, 0.428, 0.856, 3.193 max_d=3.193 avg_d=0.428 std_dev=0.429
C2 A 0, -0.018, 0.526, 1.070, 3.824 max_d=3.824 avg_d=0.526 std_dev=0.544
O4' B 0, 0.186, 0.745, 1.305, 2.733 max_d=2.733 avg_d=0.745 std_dev=0.560
C2' A 0, 0.253, 0.840, 1.427, 2.802 max_d=2.802 avg_d=0.840 std_dev=0.587
C2' B 0, 0.152, 0.818, 1.483, 3.221 max_d=3.221 avg_d=0.818 std_dev=0.665
N7 A 0, 0.082, 0.788, 1.493, 4.366 max_d=4.366 avg_d=0.788 std_dev=0.705
C8 A 0, -0.009, 0.709, 1.427, 4.761 max_d=4.761 avg_d=0.709 std_dev=0.718
C4' B 0, 0.268, 1.182, 2.096, 4.083 max_d=4.083 avg_d=1.182 std_dev=0.914
O2' A 0, 0.296, 1.210, 2.124, 3.902 max_d=3.902 avg_d=1.210 std_dev=0.914
O2' B 0, 0.031, 0.949, 1.867, 4.691 max_d=4.691 avg_d=0.949 std_dev=0.918
O4' A 0, 0.132, 1.070, 2.008, 5.110 max_d=5.110 avg_d=1.070 std_dev=0.938
C3' A 0, 0.301, 1.245, 2.189, 5.235 max_d=5.235 avg_d=1.245 std_dev=0.944
C3' B 0, 0.298, 1.349, 2.399, 4.833 max_d=4.833 avg_d=1.349 std_dev=1.050
O3' A 0, 0.463, 1.560, 2.656, 6.114 max_d=6.114 avg_d=1.560 std_dev=1.096
C4' A 0, 0.185, 1.299, 2.413, 5.800 max_d=5.800 avg_d=1.299 std_dev=1.114
O5' B 0, 1.195, 2.464, 3.733, 7.771 max_d=7.771 avg_d=2.464 std_dev=1.269
C5' B 0, 0.231, 1.581, 2.932, 6.892 max_d=6.892 avg_d=1.581 std_dev=1.350
O3' B 0, 0.594, 2.053, 3.512, 6.813 max_d=6.813 avg_d=2.053 std_dev=1.459
C5' A 0, 0.336, 2.101, 3.866, 8.816 max_d=8.816 avg_d=2.101 std_dev=1.765
P B 0, 1.283, 3.064, 4.846, 10.166 max_d=10.166 avg_d=3.064 std_dev=1.781
OP1 B 0, 2.256, 4.165, 6.074, 11.354 max_d=11.354 avg_d=4.165 std_dev=1.909
O5' A 0, 0.431, 2.496, 4.561, 9.947 max_d=9.947 avg_d=2.496 std_dev=2.065
OP2 B 0, 1.686, 3.766, 5.846, 12.174 max_d=12.174 avg_d=3.766 std_dev=2.080
P A 0, 0.691, 3.316, 5.940, 12.892 max_d=12.892 avg_d=3.316 std_dev=2.624
OP2 A 0, 0.797, 3.635, 6.474, 14.254 max_d=14.254 avg_d=3.635 std_dev=2.839
OP1 A 0, 1.241, 4.122, 7.002, 13.607 max_d=13.607 avg_d=4.122 std_dev=2.881

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.01 0.02 0.07 0.02 0.02 0.03 0.04 0.03 0.01 0.01 0.02 0.27 0.01 0.20 0.43 0.41 0.24
C2 0.04 0.00 0.41 0.30 0.01 0.20 0.02 0.36 0.01 0.02 0.01 0.01 0.01 0.02 0.02 0.38 0.35 0.35 0.47 0.89 0.80 0.63
C2' 0.01 0.41 0.00 0.01 0.22 0.02 0.11 0.17 0.20 0.21 0.33 0.41 0.15 0.12 0.03 0.01 0.04 0.02 0.42 0.68 0.61 0.52
C3' 0.02 0.30 0.01 0.00 0.25 0.01 0.31 0.02 0.33 0.31 0.32 0.27 0.36 0.34 0.20 0.02 0.01 0.02 0.28 0.55 0.30 0.28
C4 0.02 0.01 0.22 0.25 0.00 0.08 0.01 0.19 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.20 0.20 0.19 0.34 0.71 0.70 0.45
C4' 0.01 0.20 0.02 0.01 0.08 0.00 0.10 0.01 0.09 0.25 0.13 0.19 0.12 0.21 0.09 0.27 0.03 0.01 0.02 0.34 0.31 0.09
C5 0.02 0.02 0.11 0.31 0.01 0.10 0.00 0.20 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.25 0.18 0.09 0.42 0.88 0.90 0.57
C5' 0.07 0.36 0.17 0.02 0.19 0.01 0.20 0.00 0.22 0.34 0.29 0.34 0.24 0.32 0.13 0.11 0.18 0.02 0.01 0.36 0.37 0.02
C6 0.02 0.01 0.20 0.33 0.01 0.09 0.01 0.22 0.00 0.02 0.01 0.01 0.01 0.02 0.02 0.25 0.23 0.16 0.42 0.96 0.96 0.61
C8 0.02 0.02 0.21 0.31 0.01 0.25 0.01 0.34 0.02 0.00 0.02 0.01 0.03 0.00 0.01 0.42 0.22 0.21 0.57 0.86 0.87 0.64
N1 0.03 0.01 0.33 0.32 0.01 0.13 0.01 0.29 0.01 0.02 0.00 0.01 0.01 0.02 0.02 0.30 0.29 0.28 0.43 0.94 0.89 0.62
N3 0.04 0.01 0.41 0.27 0.01 0.19 0.01 0.34 0.01 0.01 0.01 0.00 0.02 0.01 0.01 0.38 0.34 0.35 0.44 0.78 0.69 0.55
N6 0.03 0.01 0.15 0.36 0.02 0.12 0.02 0.24 0.01 0.03 0.01 0.02 0.00 0.03 0.02 0.29 0.24 0.11 0.48 1.10 1.10 0.70
N7 0.01 0.02 0.12 0.34 0.01 0.21 0.01 0.32 0.02 0.00 0.02 0.01 0.03 0.00 0.01 0.40 0.23 0.11 0.57 1.03 1.04 0.71
N9 0.01 0.02 0.03 0.20 0.01 0.09 0.01 0.13 0.02 0.01 0.02 0.01 0.02 0.01 0.00 0.19 0.13 0.02 0.32 0.59 0.61 0.38
O2' 0.02 0.38 0.01 0.02 0.20 0.27 0.25 0.11 0.25 0.42 0.30 0.38 0.29 0.40 0.19 0.00 0.07 0.19 0.30 0.67 0.65 0.46
O3' 0.27 0.35 0.04 0.01 0.20 0.03 0.18 0.18 0.23 0.22 0.29 0.34 0.24 0.23 0.13 0.07 0.00 0.18 0.30 0.64 0.33 0.30
O4' 0.01 0.35 0.02 0.02 0.19 0.01 0.09 0.02 0.16 0.21 0.28 0.35 0.11 0.11 0.02 0.19 0.18 0.00 0.14 0.35 0.46 0.22
O5' 0.20 0.47 0.42 0.28 0.34 0.02 0.42 0.01 0.42 0.57 0.43 0.44 0.48 0.57 0.32 0.30 0.30 0.14 0.00 0.02 0.03 0.01
OP1 0.43 0.89 0.68 0.55 0.71 0.34 0.88 0.36 0.96 0.86 0.94 0.78 1.10 1.03 0.59 0.67 0.64 0.35 0.02 0.00 0.02 0.01
OP2 0.41 0.80 0.61 0.30 0.70 0.31 0.90 0.37 0.96 0.87 0.89 0.69 1.10 1.04 0.61 0.65 0.33 0.46 0.03 0.02 0.00 0.01
P 0.24 0.63 0.52 0.28 0.45 0.09 0.57 0.02 0.61 0.64 0.62 0.55 0.70 0.71 0.38 0.46 0.30 0.22 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.34 0.31 0.40 0.65 0.27 0.50 0.27 0.69 0.29 0.35 0.34 0.28 0.32 0.31 0.31 0.61 0.66 0.42 1.22 1.91 2.09 1.61
C2 0.31 0.51 0.34 0.58 0.38 0.41 0.42 0.58 0.53 0.34 0.57 0.42 0.61 0.37 0.33 0.51 0.52 0.38 1.14 1.69 1.91 1.44
C2' 0.43 0.50 0.49 0.61 0.43 0.52 0.43 0.71 0.48 0.43 0.53 0.45 0.52 0.42 0.42 0.70 0.61 0.48 1.20 1.94 2.07 1.61
C3' 0.51 0.48 0.58 0.65 0.44 0.63 0.44 0.85 0.47 0.52 0.51 0.44 0.50 0.47 0.48 0.79 0.65 0.58 1.27 2.03 2.14 1.70
C4 0.30 0.23 0.36 0.59 0.22 0.45 0.21 0.65 0.23 0.32 0.26 0.21 0.28 0.27 0.27 0.58 0.56 0.38 1.19 1.83 2.05 1.56
C4' 0.43 0.57 0.50 0.67 0.43 0.58 0.43 0.81 0.52 0.42 0.61 0.48 0.57 0.40 0.41 0.70 0.67 0.50 1.28 2.04 2.16 1.72
C5 0.34 0.20 0.42 0.59 0.24 0.48 0.22 0.69 0.20 0.34 0.21 0.21 0.24 0.28 0.30 0.64 0.55 0.41 1.21 1.86 2.08 1.59
C5' 0.59 0.82 0.69 0.78 0.63 0.71 0.63 0.94 0.76 0.55 0.87 0.71 0.81 0.54 0.58 0.87 0.77 0.62 1.36 2.14 2.23 1.82
C6 0.28 0.24 0.36 0.53 0.22 0.43 0.23 0.63 0.27 0.29 0.28 0.22 0.35 0.25 0.26 0.58 0.47 0.36 1.17 1.78 2.02 1.53
C8 0.43 0.37 0.54 0.68 0.36 0.58 0.35 0.79 0.37 0.42 0.39 0.36 0.40 0.37 0.40 0.74 0.67 0.49 1.26 1.98 2.16 1.69
N1 0.26 0.42 0.29 0.53 0.31 0.39 0.36 0.58 0.47 0.29 0.49 0.34 0.57 0.31 0.26 0.50 0.45 0.34 1.14 1.68 1.93 1.45
N3 0.30 0.41 0.33 0.59 0.32 0.42 0.34 0.59 0.42 0.32 0.46 0.35 0.48 0.32 0.30 0.53 0.55 0.38 1.16 1.75 1.97 1.48
N6 0.38 0.36 0.48 0.54 0.35 0.47 0.35 0.67 0.37 0.38 0.37 0.35 0.41 0.36 0.37 0.67 0.47 0.41 1.19 1.79 2.04 1.55
N7 0.45 0.38 0.57 0.67 0.39 0.58 0.37 0.79 0.38 0.44 0.39 0.38 0.40 0.39 0.42 0.77 0.64 0.50 1.26 1.97 2.16 1.68
N9 0.35 0.26 0.42 0.64 0.26 0.51 0.25 0.70 0.25 0.36 0.28 0.25 0.28 0.30 0.32 0.64 0.63 0.42 1.22 1.91 2.10 1.62
O2' 0.47 0.54 0.47 0.67 0.46 0.58 0.46 0.76 0.51 0.46 0.56 0.49 0.53 0.44 0.46 0.64 0.67 0.55 1.26 1.96 2.08 1.65
O3' 0.42 0.61 0.45 0.53 0.43 0.55 0.43 0.80 0.55 0.41 0.65 0.50 0.59 0.39 0.40 0.70 0.53 0.50 1.25 2.03 2.13 1.70
O4' 0.45 0.62 0.50 0.74 0.48 0.60 0.48 0.79 0.58 0.44 0.66 0.53 0.62 0.42 0.44 0.68 0.75 0.50 1.29 1.98 2.15 1.69
O5' 0.78 0.93 0.90 0.91 0.78 0.87 0.77 1.07 0.88 0.73 0.97 0.84 0.93 0.70 0.75 1.07 0.90 0.80 1.47 2.26 2.30 1.93
OP1 1.63 1.70 1.73 1.77 1.58 1.74 1.53 1.89 1.60 1.54 1.70 1.65 1.58 1.47 1.58 1.81 1.76 1.68 2.05 2.69 2.69 2.44
OP2 1.39 1.41 1.56 1.48 1.31 1.47 1.26 1.64 1.31 1.31 1.41 1.37 1.31 1.23 1.33 1.72 1.47 1.39 1.93 2.65 2.64 2.35
P 1.15 1.30 1.31 1.25 1.14 1.22 1.11 1.39 1.22 1.07 1.33 1.22 1.24 1.02 1.11 1.47 1.24 1.15 1.69 2.45 2.43 2.13

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.00 0.02 0.02 0.01 0.02 0.08 0.02 0.02 0.03 0.04 0.03 0.01 0.01 0.02 0.30 0.01 0.31 0.48 0.43 0.28
C2 0.04 0.00 0.35 0.33 0.01 0.26 0.01 0.54 0.01 0.02 0.01 0.01 0.01 0.01 0.02 0.29 0.33 0.27 0.67 0.85 0.90 0.68
C2' 0.00 0.35 0.00 0.01 0.19 0.02 0.11 0.20 0.18 0.17 0.28 0.35 0.14 0.10 0.03 0.01 0.03 0.02 0.54 0.75 0.60 0.54
C3' 0.02 0.33 0.01 0.00 0.27 0.01 0.34 0.03 0.36 0.38 0.35 0.30 0.40 0.41 0.23 0.02 0.01 0.03 0.34 0.54 0.31 0.28
C4 0.02 0.01 0.19 0.27 0.00 0.12 0.01 0.26 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.21 0.18 0.15 0.53 0.73 0.76 0.49
C4' 0.01 0.26 0.02 0.01 0.12 0.00 0.11 0.01 0.13 0.26 0.19 0.26 0.13 0.22 0.09 0.29 0.03 0.01 0.02 0.24 0.33 0.09
C5 0.02 0.01 0.11 0.34 0.01 0.11 0.00 0.22 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.28 0.18 0.08 0.68 0.93 1.05 0.69
C5' 0.08 0.54 0.20 0.03 0.26 0.01 0.22 0.00 0.28 0.38 0.42 0.51 0.26 0.34 0.14 0.11 0.21 0.02 0.01 0.37 0.40 0.02
C6 0.02 0.01 0.18 0.36 0.01 0.13 0.01 0.28 0.00 0.02 0.01 0.01 0.01 0.01 0.02 0.28 0.22 0.14 0.68 0.93 1.09 0.69
C8 0.02 0.02 0.17 0.38 0.01 0.26 0.01 0.38 0.02 0.00 0.02 0.01 0.03 0.00 0.01 0.35 0.22 0.16 0.86 1.09 1.16 0.92
N1 0.03 0.01 0.28 0.35 0.01 0.19 0.01 0.42 0.01 0.02 0.00 0.01 0.01 0.01 0.02 0.28 0.27 0.22 0.66 0.87 0.97 0.65
N3 0.04 0.01 0.35 0.30 0.01 0.26 0.01 0.51 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.27 0.34 0.27 0.60 0.76 0.77 0.59
N6 0.03 0.01 0.14 0.40 0.02 0.13 0.02 0.26 0.01 0.03 0.01 0.01 0.00 0.03 0.03 0.32 0.26 0.11 0.76 1.07 1.29 0.83
N7 0.01 0.01 0.10 0.41 0.01 0.22 0.00 0.34 0.01 0.00 0.01 0.01 0.03 0.00 0.01 0.36 0.25 0.09 0.88 1.18 1.34 0.98
N9 0.01 0.02 0.03 0.23 0.01 0.09 0.01 0.14 0.02 0.01 0.02 0.01 0.03 0.01 0.00 0.20 0.11 0.02 0.53 0.71 0.71 0.50
O2' 0.02 0.29 0.01 0.02 0.21 0.29 0.28 0.11 0.28 0.35 0.28 0.27 0.32 0.36 0.20 0.00 0.06 0.20 0.33 0.62 0.56 0.40
O3' 0.30 0.33 0.03 0.01 0.18 0.03 0.18 0.21 0.22 0.22 0.27 0.34 0.26 0.25 0.11 0.06 0.00 0.21 0.29 0.61 0.38 0.31
O4' 0.01 0.27 0.02 0.03 0.15 0.01 0.08 0.02 0.14 0.16 0.22 0.27 0.11 0.09 0.02 0.20 0.21 0.00 0.19 0.32 0.40 0.24
O5' 0.31 0.67 0.54 0.34 0.53 0.02 0.68 0.01 0.68 0.86 0.66 0.60 0.76 0.88 0.53 0.33 0.29 0.19 0.00 0.03 0.02 0.01
OP1 0.48 0.85 0.75 0.54 0.73 0.24 0.93 0.37 0.93 1.09 0.87 0.76 1.07 1.18 0.71 0.62 0.61 0.32 0.03 0.00 0.02 0.01
OP2 0.43 0.90 0.60 0.31 0.76 0.33 1.05 0.40 1.09 1.16 0.97 0.77 1.29 1.34 0.71 0.56 0.38 0.40 0.02 0.02 0.00 0.01
P 0.28 0.68 0.54 0.28 0.49 0.09 0.69 0.02 0.69 0.92 0.65 0.59 0.83 0.98 0.50 0.40 0.31 0.24 0.01 0.01 0.01 0.00