ClaRNA

Doublet Group distance statistics: 26943

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Distances from reference structure (by RMSD)

4, 4, 16, 1, 3, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C2 B 0, 0.092, 0.219, 0.346, 0.506 max_d=0.506 avg_d=0.219 std_dev=0.127
N1 A 0, 0.006, 0.157, 0.309, 0.755 max_d=0.755 avg_d=0.157 std_dev=0.151
N3 B 0, 0.120, 0.307, 0.493, 0.945 max_d=0.945 avg_d=0.307 std_dev=0.187
N1 B 0, -0.003, 0.190, 0.383, 0.902 max_d=0.902 avg_d=0.190 std_dev=0.193
O2 B 0, 0.169, 0.377, 0.584, 0.862 max_d=0.862 avg_d=0.377 std_dev=0.208
C1' B 0, 0.017, 0.280, 0.543, 1.150 max_d=1.150 avg_d=0.280 std_dev=0.263
C6 A 0, -0.042, 0.230, 0.503, 1.141 max_d=1.141 avg_d=0.230 std_dev=0.272
C4 B 0, 0.011, 0.284, 0.556, 1.155 max_d=1.155 avg_d=0.284 std_dev=0.272
C6 B 0, 0.035, 0.313, 0.592, 1.200 max_d=1.200 avg_d=0.313 std_dev=0.279
C5 B 0, -0.006, 0.315, 0.636, 1.311 max_d=1.311 avg_d=0.315 std_dev=0.321
N4 B 0, 0.070, 0.430, 0.789, 1.603 max_d=1.603 avg_d=0.430 std_dev=0.360
C2 A 0, -0.102, 0.310, 0.722, 2.002 max_d=2.002 avg_d=0.310 std_dev=0.412
C1' A 0, -0.057, 0.359, 0.775, 2.472 max_d=2.472 avg_d=0.359 std_dev=0.416
C5 A 0, -0.133, 0.377, 0.888, 2.289 max_d=2.289 avg_d=0.377 std_dev=0.511
N3 A 0, -0.195, 0.383, 0.961, 2.739 max_d=2.739 avg_d=0.383 std_dev=0.578
C4 A 0, -0.206, 0.428, 1.063, 2.971 max_d=2.971 avg_d=0.428 std_dev=0.635
O2 A 0, -0.146, 0.509, 1.164, 3.437 max_d=3.437 avg_d=0.509 std_dev=0.655
O4' A 0, 0.236, 0.891, 1.547, 2.537 max_d=2.537 avg_d=0.891 std_dev=0.655
C2' B 0, 0.424, 1.125, 1.826, 2.455 max_d=2.455 avg_d=1.125 std_dev=0.701
C2' A 0, 0.038, 0.750, 1.461, 4.151 max_d=4.151 avg_d=0.750 std_dev=0.711
O4' B 0, 0.454, 1.183, 1.912, 2.528 max_d=2.528 avg_d=1.183 std_dev=0.729
O2' A 0, 0.256, 1.178, 2.100, 5.186 max_d=5.186 avg_d=1.178 std_dev=0.922
O4 A 0, -0.295, 0.632, 1.560, 4.570 max_d=4.570 avg_d=0.632 std_dev=0.928
O2' B 0, 0.613, 1.581, 2.549, 4.073 max_d=4.073 avg_d=1.581 std_dev=0.968
C4' A 0, 0.234, 1.276, 2.319, 4.212 max_d=4.212 avg_d=1.276 std_dev=1.042
C3' B 0, 0.524, 1.602, 2.680, 2.969 max_d=2.969 avg_d=1.602 std_dev=1.078
C3' A 0, 0.290, 1.374, 2.458, 4.486 max_d=4.486 avg_d=1.374 std_dev=1.084
O5' A 0, 0.302, 1.450, 2.599, 4.381 max_d=4.381 avg_d=1.450 std_dev=1.148
C4' B 0, 0.373, 1.529, 2.686, 2.920 max_d=2.920 avg_d=1.529 std_dev=1.157
C5' A 0, 0.474, 1.652, 2.830, 4.984 max_d=4.984 avg_d=1.652 std_dev=1.178
O3' B 0, 0.762, 2.042, 3.322, 3.778 max_d=3.778 avg_d=2.042 std_dev=1.280
O3' A 0, 0.542, 2.072, 3.603, 4.977 max_d=4.977 avg_d=2.072 std_dev=1.531
O5' B 0, 0.550, 2.113, 3.676, 5.806 max_d=5.806 avg_d=2.113 std_dev=1.563
P A 0, 0.189, 1.827, 3.465, 6.515 max_d=6.515 avg_d=1.827 std_dev=1.638
C5' B 0, 0.658, 2.376, 4.094, 4.965 max_d=4.965 avg_d=2.376 std_dev=1.718
OP2 A 0, 0.240, 2.064, 3.887, 7.731 max_d=7.731 avg_d=2.064 std_dev=1.823
OP1 A 0, 0.362, 2.383, 4.403, 8.063 max_d=8.063 avg_d=2.383 std_dev=2.021
OP2 B 0, 0.320, 2.457, 4.594, 9.891 max_d=9.891 avg_d=2.457 std_dev=2.137
P B 0, 0.499, 2.653, 4.808, 8.851 max_d=8.851 avg_d=2.653 std_dev=2.155
OP1 B 0, 0.743, 3.431, 6.118, 10.013 max_d=10.013 avg_d=3.431 std_dev=2.688

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.01 0.03 0.01 0.03 0.07 0.02 0.01 0.03 0.06 0.02 0.36 0.03 0.01 0.32 0.76 0.32 0.34
C2 0.04 0.00 0.20 0.27 0.01 0.08 0.02 0.12 0.02 0.01 0.01 0.01 0.20 0.27 0.01 0.13 0.38 0.72 0.31 0.25
C2' 0.01 0.20 0.00 0.01 0.07 0.02 0.19 0.22 0.23 0.03 0.14 0.38 0.00 0.04 0.07 0.02 0.54 1.10 0.78 0.75
C3' 0.01 0.27 0.01 0.00 0.40 0.01 0.46 0.02 0.42 0.23 0.33 0.32 0.03 0.01 0.44 0.02 0.31 0.85 0.34 0.41
C4 0.03 0.01 0.07 0.40 0.00 0.18 0.01 0.23 0.01 0.02 0.01 0.02 0.39 0.17 0.01 0.05 0.62 0.74 0.67 0.48
C4' 0.01 0.08 0.02 0.01 0.18 0.00 0.27 0.01 0.27 0.10 0.10 0.16 0.31 0.03 0.19 0.01 0.02 0.44 0.33 0.16
C5 0.03 0.02 0.19 0.46 0.01 0.27 0.00 0.31 0.01 0.01 0.01 0.02 0.45 0.33 0.02 0.12 0.73 0.76 0.74 0.56
C5' 0.07 0.12 0.22 0.02 0.23 0.01 0.31 0.00 0.28 0.10 0.15 0.19 0.09 0.24 0.26 0.02 0.01 0.26 0.31 0.02
C6 0.02 0.02 0.23 0.42 0.01 0.27 0.01 0.28 0.00 0.01 0.02 0.03 0.40 0.30 0.01 0.15 0.67 0.71 0.53 0.44
N1 0.01 0.01 0.03 0.23 0.02 0.10 0.01 0.10 0.01 0.00 0.02 0.03 0.23 0.15 0.02 0.03 0.45 0.71 0.31 0.29
N3 0.03 0.01 0.14 0.33 0.01 0.10 0.01 0.15 0.02 0.02 0.00 0.01 0.28 0.16 0.01 0.10 0.48 0.71 0.46 0.32
O2 0.06 0.01 0.38 0.32 0.02 0.16 0.02 0.19 0.03 0.03 0.01 0.00 0.26 0.52 0.02 0.22 0.28 0.75 0.28 0.24
O2' 0.02 0.20 0.00 0.03 0.39 0.31 0.45 0.09 0.40 0.23 0.28 0.26 0.00 0.05 0.41 0.21 0.41 1.15 0.89 0.75
O3' 0.36 0.27 0.04 0.01 0.17 0.03 0.33 0.24 0.30 0.15 0.16 0.52 0.05 0.00 0.21 0.25 0.38 0.77 0.40 0.39
O4 0.03 0.01 0.07 0.44 0.01 0.19 0.02 0.26 0.01 0.02 0.01 0.02 0.41 0.21 0.00 0.06 0.66 0.77 0.79 0.55
O4' 0.01 0.13 0.02 0.02 0.05 0.01 0.12 0.02 0.15 0.03 0.10 0.22 0.21 0.25 0.06 0.00 0.19 0.67 0.44 0.36
O5' 0.32 0.38 0.54 0.31 0.62 0.02 0.73 0.01 0.67 0.45 0.48 0.28 0.41 0.38 0.66 0.19 0.00 0.03 0.02 0.01
OP1 0.76 0.72 1.10 0.85 0.74 0.44 0.76 0.26 0.71 0.71 0.71 0.75 1.15 0.77 0.77 0.67 0.03 0.00 0.01 0.01
OP2 0.32 0.31 0.78 0.34 0.67 0.33 0.74 0.31 0.53 0.31 0.46 0.28 0.89 0.40 0.79 0.44 0.02 0.01 0.00 0.01
P 0.34 0.25 0.75 0.41 0.48 0.16 0.56 0.02 0.44 0.29 0.32 0.24 0.75 0.39 0.55 0.36 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.46 0.52 0.53 0.40 0.56 0.40 0.51 0.58 0.48 0.48 0.56 0.62 0.52 0.77 0.43 0.49 0.72 1.03 1.25 1.01
C2 0.43 0.38 0.44 0.43 0.42 0.40 0.41 0.52 0.45 0.40 0.42 0.53 0.38 0.72 0.50 0.42 0.54 0.91 0.89 0.79
C2' 0.65 0.63 0.78 0.50 0.62 0.53 0.61 0.67 0.62 0.63 0.63 0.63 0.64 1.08 0.49 0.62 0.78 1.11 1.33 1.08
C3' 0.79 0.68 0.69 0.79 0.64 0.94 0.71 1.11 0.77 0.74 0.64 0.60 0.68 0.88 0.82 0.98 1.17 1.51 1.61 1.46
C4 0.85 0.68 0.81 0.98 0.67 0.94 0.84 0.99 0.89 0.81 0.61 0.56 0.64 0.92 1.02 0.91 1.04 1.19 1.18 1.13
C4' 0.66 0.64 0.55 0.59 0.62 0.71 0.63 0.88 0.65 0.65 0.63 0.61 0.64 0.73 0.59 0.82 0.98 1.30 1.45 1.27
C5 0.70 0.57 0.67 0.81 0.55 0.75 0.68 0.79 0.72 0.66 0.51 0.46 0.54 0.84 0.88 0.73 0.84 1.04 1.05 0.95
C5' 0.59 0.52 0.46 0.59 0.48 0.70 0.53 0.87 0.57 0.56 0.48 0.44 0.52 0.66 0.64 0.78 0.96 1.34 1.37 1.26
C6 0.45 0.30 0.44 0.54 0.26 0.47 0.38 0.57 0.44 0.40 0.25 0.19 0.29 0.71 0.63 0.47 0.64 0.95 1.02 0.85
N1 0.36 0.30 0.39 0.37 0.31 0.32 0.31 0.47 0.35 0.32 0.32 0.37 0.30 0.70 0.46 0.36 0.54 0.90 0.99 0.81
N3 0.67 0.48 0.63 0.77 0.47 0.76 0.65 0.85 0.71 0.61 0.42 0.42 0.44 0.81 0.82 0.73 0.88 1.13 1.09 1.04
O2 0.49 0.62 0.52 0.34 0.74 0.28 0.58 0.41 0.52 0.53 0.74 0.93 0.63 0.78 0.38 0.40 0.41 0.85 0.80 0.72
O2' 0.72 0.75 0.88 0.65 0.78 0.64 0.76 0.83 0.74 0.74 0.77 0.80 0.75 1.13 0.63 0.70 1.03 1.31 1.69 1.34
O3' 1.35 1.21 1.06 1.35 1.14 1.59 1.26 1.77 1.34 1.30 1.13 1.04 1.20 1.08 1.36 1.66 1.80 2.03 2.14 2.05
O4 1.15 0.99 1.10 1.29 1.00 1.25 1.17 1.29 1.20 1.12 0.93 0.90 0.94 1.14 1.31 1.21 1.35 1.41 1.40 1.38
O4' 0.56 0.61 0.50 0.48 0.63 0.55 0.59 0.71 0.57 0.58 0.63 0.66 0.62 0.68 0.49 0.66 0.83 1.14 1.30 1.12
O5' 0.52 0.42 0.46 0.58 0.40 0.62 0.46 0.77 0.50 0.48 0.39 0.39 0.42 0.69 0.66 0.66 0.84 1.20 1.25 1.10
OP1 1.04 0.96 0.88 1.25 0.93 1.35 0.96 1.54 1.01 1.00 0.94 0.92 0.96 0.86 1.37 1.29 1.57 1.90 1.93 1.80
OP2 0.74 0.60 0.59 0.83 0.54 0.88 0.63 0.99 0.70 0.68 0.55 0.48 0.61 0.75 0.91 0.87 1.01 1.38 1.34 1.22
P 0.60 0.44 0.47 0.76 0.39 0.82 0.48 0.99 0.56 0.53 0.39 0.34 0.44 0.64 0.87 0.80 1.03 1.39 1.40 1.27

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.03 0.02 0.02 0.02 0.08 0.02 0.01 0.03 0.03 0.07 0.03 0.21 0.01 0.19 0.20 0.23 0.21
C2 0.04 0.00 0.23 0.34 0.02 0.14 0.02 0.25 0.02 0.01 0.01 0.02 0.01 0.18 0.25 0.17 0.36 0.37 0.41 0.41
C2' 0.01 0.23 0.00 0.01 0.07 0.04 0.19 0.17 0.24 0.04 0.17 0.08 0.42 0.00 0.04 0.02 0.45 0.43 0.55 0.48
C3' 0.03 0.34 0.01 0.00 0.34 0.01 0.28 0.03 0.23 0.21 0.37 0.37 0.40 0.03 0.02 0.03 0.22 0.26 0.13 0.19
C4 0.02 0.02 0.07 0.34 0.00 0.12 0.01 0.22 0.01 0.02 0.01 0.01 0.03 0.28 0.27 0.06 0.30 0.29 0.27 0.30
C4' 0.02 0.14 0.04 0.01 0.12 0.00 0.20 0.01 0.22 0.07 0.12 0.14 0.28 0.29 0.05 0.01 0.03 0.10 0.15 0.04
C5 0.02 0.02 0.19 0.28 0.01 0.20 0.00 0.34 0.00 0.01 0.01 0.02 0.03 0.39 0.24 0.16 0.44 0.47 0.50 0.48
C5' 0.08 0.25 0.17 0.03 0.22 0.01 0.34 0.00 0.35 0.13 0.23 0.24 0.47 0.15 0.21 0.02 0.01 0.11 0.21 0.03
C6 0.02 0.02 0.24 0.23 0.01 0.22 0.00 0.35 0.00 0.01 0.01 0.02 0.03 0.37 0.18 0.20 0.44 0.45 0.48 0.47
N1 0.01 0.01 0.04 0.21 0.02 0.07 0.01 0.13 0.01 0.00 0.01 0.02 0.03 0.17 0.13 0.03 0.21 0.21 0.19 0.22
N3 0.03 0.01 0.17 0.37 0.01 0.12 0.01 0.23 0.01 0.01 0.00 0.01 0.02 0.20 0.29 0.12 0.34 0.36 0.39 0.38
N4 0.03 0.02 0.08 0.37 0.01 0.14 0.02 0.24 0.02 0.02 0.01 0.00 0.03 0.30 0.32 0.07 0.33 0.33 0.33 0.33
O2 0.07 0.01 0.42 0.40 0.03 0.28 0.03 0.47 0.03 0.03 0.02 0.03 0.00 0.37 0.34 0.31 0.61 0.66 0.73 0.72
O2' 0.03 0.18 0.00 0.03 0.28 0.29 0.39 0.15 0.37 0.17 0.20 0.30 0.37 0.00 0.08 0.19 0.31 0.34 0.60 0.39
O3' 0.21 0.25 0.04 0.02 0.27 0.05 0.24 0.21 0.18 0.13 0.29 0.32 0.34 0.08 0.00 0.15 0.21 0.40 0.24 0.25
O4' 0.01 0.17 0.02 0.03 0.06 0.01 0.16 0.02 0.20 0.03 0.12 0.07 0.31 0.19 0.15 0.00 0.10 0.14 0.24 0.16
O5' 0.19 0.36 0.45 0.22 0.30 0.03 0.44 0.01 0.44 0.21 0.34 0.33 0.61 0.31 0.21 0.10 0.00 0.02 0.02 0.01
OP1 0.20 0.37 0.43 0.26 0.29 0.10 0.47 0.11 0.45 0.21 0.36 0.33 0.66 0.34 0.40 0.14 0.02 0.00 0.02 0.01
OP2 0.23 0.41 0.55 0.13 0.27 0.15 0.50 0.21 0.48 0.19 0.39 0.33 0.73 0.60 0.24 0.24 0.02 0.02 0.00 0.01
P 0.21 0.41 0.48 0.19 0.30 0.04 0.48 0.03 0.47 0.22 0.38 0.33 0.72 0.39 0.25 0.16 0.01 0.01 0.01 0.00