sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1L9A-B57-B56
X
>3L3C-G3-G2
X
>3IQN-A46-A45
X
>3U5B-21305-21286
X
>1XMQ-A1075-A1056
X
>2UXC-A1080-A1061
X
</seq>
<hsp>
0 1:0.378223999791
0 2:0.479672316922
0 3:0.999998175575
0 4:0.89535593739
0 5:0.898478212545
1 2:0.457750448422
1 3:0.965834464421
1 4:0.858758665842
1 5:0.861583281723
2 3:0.681841113599
2 4:0.601107961954
2 5:0.589098098393
3 4:0.15652373495
3 5:0.135592997201
4 5:0.0535760084551
</hsp>