ClaRNA

Doublet Group distance statistics: 2759

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Distances from reference structure (by RMSD)

37, 63, 147, 121, 75, 27, 16, 1, 1, 1, 0, 5, 3, 1, 2, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.480, 2.119, 3.757, 4.063 max_d=4.063 avg_d=2.119 std_dev=1.639
N1 A 0, 0.521, 2.178, 3.836, 4.399 max_d=4.399 avg_d=2.178 std_dev=1.657
N6 A 0, 0.519, 2.187, 3.856, 5.641 max_d=5.641 avg_d=2.187 std_dev=1.668
N6 B 0, 0.606, 2.425, 4.244, 5.881 max_d=5.881 avg_d=2.425 std_dev=1.819
C6 A 0, 0.463, 2.443, 4.423, 4.851 max_d=4.851 avg_d=2.443 std_dev=1.980
C6 B 0, 0.513, 2.558, 4.603, 5.503 max_d=5.503 avg_d=2.558 std_dev=2.045
C2 B 0, 0.621, 3.468, 6.316, 6.657 max_d=6.657 avg_d=3.468 std_dev=2.847
C2 A 0, 0.642, 3.569, 6.495, 6.989 max_d=6.989 avg_d=3.569 std_dev=2.927
C5 A 0, 0.570, 3.946, 7.323, 7.335 max_d=7.335 avg_d=3.946 std_dev=3.377
C5 B 0, 0.579, 4.033, 7.487, 7.915 max_d=7.915 avg_d=4.033 std_dev=3.454
N3 B 0, 0.664, 4.688, 8.711, 8.782 max_d=8.782 avg_d=4.688 std_dev=4.024
N3 A 0, 0.653, 4.733, 8.814, 8.901 max_d=8.901 avg_d=4.733 std_dev=4.081
C4 A 0, 0.565, 4.745, 8.925, 8.860 max_d=8.860 avg_d=4.745 std_dev=4.180
C4 B 0, 0.546, 4.753, 8.959, 8.890 max_d=8.890 avg_d=4.753 std_dev=4.207
N7 A 0, 0.861, 5.209, 9.557, 9.676 max_d=9.676 avg_d=5.209 std_dev=4.348
N7 B 0, 0.841, 5.319, 9.796, 10.306 max_d=10.306 avg_d=5.319 std_dev=4.478
C8 A 0, 0.993, 6.349, 11.706, 11.540 max_d=11.540 avg_d=6.349 std_dev=5.357
N9 A 0, 0.837, 6.197, 11.557, 11.382 max_d=11.382 avg_d=6.197 std_dev=5.360
N9 B 0, 0.798, 6.211, 11.624, 11.452 max_d=11.452 avg_d=6.211 std_dev=5.413
C8 B 0, 0.933, 6.405, 11.878, 11.940 max_d=11.940 avg_d=6.405 std_dev=5.472
C1' B 0, 1.068, 7.609, 14.149, 13.907 max_d=13.907 avg_d=7.609 std_dev=6.541
C1' A 0, 1.055, 7.599, 14.144, 13.855 max_d=13.855 avg_d=7.599 std_dev=6.545
O2' A 0, 2.586, 9.330, 16.075, 16.403 max_d=16.403 avg_d=9.330 std_dev=6.744
O4' B 0, 1.638, 8.531, 15.424, 15.235 max_d=15.235 avg_d=8.531 std_dev=6.893
C2' A 0, 1.670, 8.693, 15.717, 15.875 max_d=15.875 avg_d=8.693 std_dev=7.023
O4' A 0, 1.578, 8.675, 15.772, 15.396 max_d=15.396 avg_d=8.675 std_dev=7.097
O2' B 0, 2.132, 9.380, 16.627, 17.244 max_d=17.244 avg_d=9.380 std_dev=7.248
C2' B 0, 1.551, 8.805, 16.059, 16.190 max_d=16.190 avg_d=8.805 std_dev=7.254
O3' A 0, 2.729, 10.564, 18.398, 18.773 max_d=18.773 avg_d=10.564 std_dev=7.835
O5' A 0, 3.822, 11.667, 19.512, 20.030 max_d=20.030 avg_d=11.667 std_dev=7.845
C3' A 0, 2.087, 9.944, 17.802, 18.200 max_d=18.200 avg_d=9.944 std_dev=7.857
C4' B 0, 2.085, 10.089, 18.093, 17.842 max_d=17.842 avg_d=10.089 std_dev=8.004
C5' B 0, 2.760, 10.800, 18.840, 19.007 max_d=19.007 avg_d=10.800 std_dev=8.040
C4' A 0, 2.162, 10.219, 18.277, 17.985 max_d=17.985 avg_d=10.219 std_dev=8.058
C3' B 0, 2.182, 10.305, 18.427, 18.587 max_d=18.587 avg_d=10.305 std_dev=8.123
P A 0, 4.692, 12.992, 21.292, 22.232 max_d=22.232 avg_d=12.992 std_dev=8.300
OP2 B 0, 4.267, 12.657, 21.048, 23.248 max_d=23.248 avg_d=12.657 std_dev=8.391
O5' B 0, 3.191, 11.642, 20.092, 20.878 max_d=20.878 avg_d=11.642 std_dev=8.450
OP2 A 0, 4.497, 13.038, 21.580, 22.887 max_d=22.887 avg_d=13.038 std_dev=8.541
C5' A 0, 2.631, 11.236, 19.841, 19.978 max_d=19.978 avg_d=11.236 std_dev=8.605
O3' B 0, 2.699, 11.326, 19.954, 20.251 max_d=20.251 avg_d=11.326 std_dev=8.627
P B 0, 4.020, 12.745, 21.470, 22.530 max_d=22.530 avg_d=12.745 std_dev=8.725
OP1 A 0, 5.380, 14.208, 23.037, 24.595 max_d=24.595 avg_d=14.208 std_dev=8.828
OP1 B 0, 4.410, 13.955, 23.499, 24.463 max_d=24.463 avg_d=13.955 std_dev=9.544

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.01 0.01 0.06 0.02 0.02 0.03 0.04 0.02 0.01 0.01 0.02 0.35 0.01 0.32 0.46 0.56 0.33
C2 0.04 0.00 0.38 0.36 0.01 0.28 0.01 0.49 0.01 0.02 0.00 0.00 0.01 0.02 0.02 0.21 0.36 0.32 0.68 1.15 0.98 0.83
C2' 0.01 0.38 0.00 0.00 0.21 0.01 0.12 0.20 0.20 0.16 0.31 0.37 0.15 0.08 0.03 0.00 0.04 0.02 0.31 0.44 0.37 0.30
C3' 0.02 0.36 0.00 0.00 0.30 0.01 0.38 0.02 0.41 0.35 0.39 0.31 0.45 0.41 0.24 0.02 0.01 0.02 0.36 0.46 0.34 0.33
C4 0.02 0.01 0.21 0.30 0.00 0.13 0.01 0.23 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.15 0.20 0.16 0.56 0.92 0.89 0.63
C4' 0.01 0.28 0.01 0.01 0.13 0.00 0.15 0.01 0.16 0.30 0.21 0.28 0.18 0.27 0.11 0.29 0.03 0.01 0.02 0.25 0.30 0.05
C5 0.01 0.01 0.12 0.38 0.01 0.15 0.00 0.25 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.28 0.13 0.07 0.69 1.15 1.14 0.80
C5' 0.06 0.49 0.20 0.02 0.23 0.01 0.25 0.00 0.29 0.41 0.39 0.46 0.32 0.39 0.14 0.09 0.21 0.02 0.01 0.36 0.39 0.02
C6 0.02 0.01 0.20 0.41 0.01 0.16 0.01 0.29 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.25 0.18 0.14 0.68 1.24 1.16 0.82
C8 0.02 0.02 0.16 0.35 0.01 0.30 0.01 0.41 0.02 0.00 0.02 0.01 0.03 0.00 0.00 0.43 0.17 0.20 0.86 1.14 1.27 0.94
N1 0.03 0.00 0.31 0.39 0.01 0.21 0.01 0.39 0.01 0.02 0.00 0.01 0.01 0.02 0.02 0.17 0.26 0.24 0.67 1.21 1.06 0.82
N3 0.04 0.00 0.37 0.31 0.00 0.28 0.01 0.46 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.22 0.38 0.32 0.63 0.98 0.86 0.72
N6 0.02 0.01 0.15 0.45 0.01 0.18 0.02 0.32 0.00 0.03 0.01 0.01 0.00 0.03 0.02 0.32 0.19 0.09 0.75 1.39 1.32 0.93
N7 0.01 0.02 0.08 0.41 0.01 0.27 0.01 0.39 0.02 0.00 0.02 0.01 0.03 0.00 0.01 0.43 0.18 0.12 0.87 1.33 1.40 1.02
N9 0.01 0.02 0.03 0.24 0.01 0.11 0.01 0.14 0.01 0.00 0.02 0.01 0.02 0.01 0.00 0.22 0.15 0.02 0.55 0.78 0.86 0.58
O2' 0.02 0.21 0.00 0.02 0.15 0.29 0.28 0.09 0.25 0.43 0.17 0.22 0.32 0.43 0.22 0.00 0.06 0.21 0.31 0.43 0.34 0.29
O3' 0.35 0.36 0.04 0.01 0.20 0.03 0.13 0.21 0.18 0.17 0.26 0.38 0.19 0.18 0.15 0.06 0.00 0.23 0.48 0.64 0.66 0.55
O4' 0.01 0.32 0.02 0.02 0.16 0.01 0.07 0.02 0.14 0.20 0.24 0.32 0.09 0.12 0.02 0.21 0.23 0.00 0.28 0.36 0.57 0.30
O5' 0.32 0.68 0.31 0.36 0.56 0.02 0.69 0.01 0.68 0.86 0.67 0.63 0.75 0.87 0.55 0.31 0.48 0.28 0.00 0.02 0.02 0.01
OP1 0.46 1.15 0.44 0.46 0.92 0.25 1.15 0.36 1.24 1.14 1.21 0.98 1.39 1.33 0.78 0.43 0.64 0.36 0.02 0.00 0.01 0.01
OP2 0.56 0.98 0.37 0.34 0.89 0.30 1.14 0.39 1.16 1.27 1.06 0.86 1.32 1.40 0.86 0.34 0.66 0.57 0.02 0.01 0.00 0.01
P 0.33 0.83 0.30 0.33 0.63 0.05 0.80 0.02 0.82 0.94 0.82 0.72 0.93 1.02 0.58 0.29 0.55 0.30 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.31 0.38 0.44 0.64 0.28 0.59 0.25 0.84 0.24 0.26 0.29 0.37 0.31 0.28 0.27 0.54 0.58 0.56 1.19 1.65 1.93 1.53
C2 0.40 0.51 0.46 0.68 0.38 0.60 0.32 0.76 0.32 0.32 0.42 0.48 0.37 0.32 0.36 0.59 0.62 0.58 1.07 1.44 1.70 1.28
C2' 0.41 0.44 0.61 0.79 0.39 0.62 0.39 0.80 0.38 0.41 0.38 0.44 0.43 0.43 0.39 0.69 0.77 0.55 1.16 1.72 1.80 1.47
C3' 0.59 0.62 0.81 0.93 0.56 0.72 0.52 0.85 0.51 0.52 0.56 0.62 0.50 0.51 0.55 0.89 0.94 0.65 1.16 1.74 1.76 1.46
C4 0.30 0.37 0.42 0.61 0.26 0.58 0.20 0.82 0.20 0.22 0.26 0.36 0.30 0.23 0.24 0.52 0.55 0.55 1.15 1.60 1.84 1.47
C4' 0.52 0.55 0.68 0.81 0.49 0.72 0.47 0.93 0.46 0.48 0.49 0.55 0.48 0.48 0.49 0.74 0.79 0.68 1.21 1.71 1.95 1.55
C5 0.24 0.29 0.42 0.56 0.18 0.56 0.15 0.85 0.19 0.15 0.19 0.29 0.34 0.20 0.18 0.53 0.52 0.53 1.18 1.68 1.86 1.55
C5' 0.73 0.73 0.92 1.00 0.70 0.88 0.70 1.07 0.69 0.72 0.69 0.73 0.71 0.72 0.71 0.98 0.99 0.83 1.31 1.85 2.02 1.67
C6 0.23 0.28 0.39 0.54 0.17 0.55 0.18 0.82 0.24 0.16 0.21 0.28 0.42 0.22 0.17 0.50 0.51 0.51 1.14 1.61 1.77 1.47
C8 0.26 0.30 0.47 0.57 0.19 0.58 0.15 0.91 0.16 0.16 0.18 0.30 0.30 0.20 0.19 0.59 0.55 0.55 1.25 1.82 2.00 1.68
N1 0.32 0.42 0.41 0.61 0.28 0.57 0.22 0.77 0.25 0.22 0.29 0.40 0.40 0.25 0.26 0.52 0.56 0.54 1.07 1.47 1.67 1.31
N3 0.38 0.48 0.46 0.67 0.36 0.60 0.31 0.77 0.31 0.32 0.39 0.45 0.34 0.32 0.34 0.56 0.61 0.57 1.10 1.49 1.77 1.35
N6 0.22 0.26 0.43 0.49 0.21 0.53 0.30 0.84 0.39 0.24 0.34 0.24 0.54 0.32 0.20 0.56 0.50 0.50 1.15 1.68 1.78 1.53
N7 0.26 0.28 0.48 0.54 0.19 0.57 0.18 0.91 0.21 0.17 0.20 0.29 0.35 0.22 0.19 0.61 0.54 0.55 1.25 1.83 1.97 1.69
N9 0.28 0.35 0.44 0.61 0.24 0.58 0.19 0.85 0.19 0.21 0.24 0.34 0.29 0.23 0.23 0.54 0.55 0.55 1.20 1.69 1.93 1.56
O2' 0.41 0.53 0.60 0.79 0.38 0.62 0.32 0.80 0.33 0.33 0.41 0.50 0.36 0.35 0.36 0.72 0.78 0.54 1.12 1.61 1.89 1.44
O3' 0.51 0.51 0.78 0.92 0.47 0.69 0.45 0.86 0.43 0.48 0.44 0.52 0.47 0.49 0.48 0.84 0.96 0.58 1.02 1.58 1.76 1.34
O4' 0.49 0.53 0.57 0.74 0.47 0.75 0.46 1.01 0.45 0.47 0.47 0.52 0.49 0.49 0.47 0.63 0.68 0.73 1.29 1.72 2.08 1.66
O5' 0.92 0.94 0.97 1.03 0.93 1.05 0.94 1.26 0.95 0.94 0.94 0.94 0.98 0.96 0.93 1.06 1.03 1.09 1.62 2.03 2.31 1.95
OP1 1.78 1.79 1.93 1.90 1.77 1.74 1.75 1.79 1.74 1.75 1.75 1.80 1.73 1.74 1.77 1.96 1.85 1.74 2.14 2.40 2.68 2.36
OP2 1.44 1.39 1.38 1.39 1.40 1.56 1.40 1.75 1.38 1.43 1.36 1.41 1.40 1.43 1.42 1.60 1.47 1.65 2.03 2.53 2.57 2.37
P 1.21 1.20 1.32 1.33 1.20 1.27 1.21 1.44 1.21 1.22 1.18 1.21 1.24 1.24 1.21 1.45 1.36 1.29 1.78 2.26 2.40 2.12

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.01 0.01 0.11 0.02 0.02 0.03 0.04 0.02 0.01 0.01 0.02 0.31 0.01 0.30 0.54 0.45 0.31
C2 0.04 0.00 0.38 0.31 0.01 0.32 0.01 0.52 0.01 0.02 0.00 0.00 0.01 0.02 0.02 0.46 0.40 0.42 0.75 1.16 1.04 0.94
C2' 0.01 0.38 0.00 0.01 0.20 0.02 0.11 0.23 0.19 0.20 0.30 0.37 0.15 0.12 0.04 0.00 0.04 0.02 0.54 0.60 0.91 0.63
C3' 0.02 0.31 0.01 0.00 0.27 0.01 0.35 0.03 0.37 0.37 0.34 0.27 0.41 0.40 0.24 0.03 0.01 0.02 0.33 0.42 0.68 0.36
C4 0.02 0.01 0.20 0.27 0.00 0.15 0.00 0.27 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.29 0.22 0.22 0.53 0.87 0.73 0.59
C4' 0.01 0.32 0.02 0.01 0.15 0.00 0.14 0.01 0.16 0.27 0.25 0.31 0.17 0.23 0.10 0.32 0.03 0.01 0.02 0.25 0.33 0.11
C5 0.01 0.01 0.11 0.35 0.00 0.14 0.00 0.26 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.34 0.18 0.10 0.61 1.00 0.96 0.70
C5' 0.11 0.52 0.23 0.03 0.27 0.01 0.26 0.00 0.31 0.45 0.43 0.48 0.31 0.40 0.20 0.12 0.23 0.02 0.01 0.29 0.36 0.02
C6 0.02 0.01 0.19 0.37 0.01 0.16 0.01 0.31 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.37 0.23 0.19 0.67 1.08 1.09 0.81
C8 0.02 0.02 0.20 0.37 0.01 0.27 0.01 0.45 0.01 0.00 0.02 0.01 0.02 0.00 0.01 0.41 0.25 0.23 0.73 1.07 0.97 0.79
N1 0.03 0.00 0.30 0.34 0.01 0.25 0.01 0.43 0.01 0.02 0.00 0.01 0.01 0.01 0.02 0.41 0.31 0.33 0.73 1.15 1.10 0.91
N3 0.04 0.00 0.37 0.27 0.01 0.31 0.01 0.48 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.43 0.41 0.42 0.66 1.00 0.83 0.78
N6 0.02 0.01 0.15 0.41 0.01 0.17 0.01 0.31 0.00 0.02 0.01 0.01 0.00 0.02 0.02 0.39 0.25 0.13 0.71 1.16 1.24 0.88
N7 0.01 0.02 0.12 0.40 0.01 0.23 0.00 0.40 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.42 0.27 0.13 0.73 1.15 1.13 0.84
N9 0.01 0.02 0.04 0.24 0.01 0.10 0.01 0.20 0.01 0.01 0.02 0.01 0.02 0.01 0.00 0.22 0.13 0.02 0.46 0.76 0.61 0.47
O2' 0.02 0.46 0.00 0.03 0.29 0.32 0.34 0.12 0.37 0.41 0.41 0.43 0.39 0.42 0.22 0.00 0.07 0.22 0.35 0.49 0.92 0.53
O3' 0.31 0.40 0.04 0.01 0.22 0.03 0.18 0.23 0.23 0.25 0.31 0.41 0.25 0.27 0.13 0.07 0.00 0.23 0.27 0.55 0.56 0.31
O4' 0.01 0.42 0.02 0.02 0.22 0.01 0.10 0.02 0.19 0.23 0.33 0.42 0.13 0.13 0.02 0.22 0.23 0.00 0.24 0.56 0.34 0.32
O5' 0.30 0.75 0.54 0.33 0.53 0.02 0.61 0.01 0.67 0.73 0.73 0.66 0.71 0.73 0.46 0.35 0.27 0.24 0.00 0.03 0.02 0.01
OP1 0.54 1.16 0.60 0.42 0.87 0.25 1.00 0.29 1.08 1.07 1.15 1.00 1.16 1.15 0.76 0.49 0.55 0.56 0.03 0.00 0.02 0.01
OP2 0.45 1.04 0.91 0.68 0.73 0.33 0.96 0.36 1.09 0.97 1.10 0.83 1.24 1.13 0.61 0.92 0.56 0.34 0.02 0.02 0.00 0.01
P 0.31 0.94 0.63 0.36 0.59 0.11 0.70 0.02 0.81 0.79 0.91 0.78 0.88 0.84 0.47 0.53 0.31 0.32 0.01 0.01 0.01 0.00