ClaRNA

Doublet Group info: classifier/stacking/<>/GG

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: stacking
Desc: <>/GG
Sub-clusters:
count: 39     show
<>/GG/sub-001
<>/GG/sub-002
<>/GG/sub-003
<>/GG/sub-004
<>/GG/sub-005
<>/GG/sub-006
<>/GG/sub-007
<>/GG/sub-008
<>/GG/sub-009
<>/GG/sub-010
<>/GG/sub-011
<>/GG/sub-012
<>/GG/sub-013
<>/GG/sub-014
<>/GG/sub-015
<>/GG/sub-016
<>/GG/sub-017
<>/GG/sub-018
<>/GG/sub-019
<>/GG/sub-020
<>/GG/sub-021
<>/GG/sub-022
<>/GG/sub-023
<>/GG/sub-024
<>/GG/sub-025
<>/GG/sub-026
<>/GG/sub-027
<>/GG/sub-028
<>/GG/sub-029
<>/GG/sub-030
<>/GG/sub-031
<>/GG/sub-032
<>/GG/sub-033
<>/GG/sub-034
<>/GG/sub-035
<>/GG/sub-036
<>/GG/sub-037
<>/GG/sub-038
<>/GG/sub-039
Members:
count: 594
download members
1NUJ:A6:E6
1NUJ:C6:G6
1NUV:A6:E6
1NUV:C6:G6
3KNI:A1821:A1844
3KNK:A1821:A1844
3F1H:A1900:A1923
3CCV:0207:0209
3F1F:A1900:A1923
3OH5:A1822:A1845
3OI1:A1822:A1845
3OH7:A1822:A1845
3OHK:A1822:A1845
3OHJ:A1822:A1845
2J03:A1822:A1845
3R8T:A1898:A1921
3CCR:01905:01916
2QA4:01904:01915
3KNH:A109:A177
3D0X:A151:A153
3D0U:A151:A153
3DIZ:A162:A164
3DIG:X162:X164
3OGE:A413:A414
3OGY:A413:A414
3DIX:A162:A164
2CKY:A0:A1
3DIM:A162:A164
3DIL:A162:A164
1Q81:A128:A130
3DIO:X162:X164
3DJ2:A162:A164
1K8A:A128:A130
3DJ0:A162:A164
1K9M:A128:A130
3CXC:0128:0130
3DIQ:A162:A164
1Q82:A128:A130
3CCJ:0128:0130
1S72:0128:0130
1JJ2:0128:0130
1Q86:A128:A130
3I56:0128:0130
1YHQ:0128:0130
3CPW:0128:0130
3CMA:0128:0130
1KD1:A128:A130
1M90:A128:A130
3CCS:0128:0130
3F1F:B80:B81
1VQK:0128:0130
1VQO:0128:0130
1YJ9:0128:0130
1VQP:0128:0130
3CC7:0128:0130
3CCU:0128:0130
2QEX:0128:0130
3CC2:0128:0130
3CCL:0128:0130
3F1H:B80:B81
3G6E:0128:0130
1VQM:0128:0130
1VQ9:0128:0130
2OTL:0128:0130
3DIR:A162:A164
1VQ6:0128:0130
1VQ5:0128:0130
1YJN:0128:0130
1YIJ:0128:0130
1QVG:01731:01732
3CD6:0128:0130
3CXC:01731:01732
1K8A:A1731:A1732
2UUB:A336:A337
1YIT:0128:0130
3CCV:0128:0130
2QA4:0128:0130
1VQ7:0128:0130
1N32:A336:A337
1VQ8:0128:0130
3CCQ:0128:0130
3CME:0128:0130
1CX0:B24:B27
3CCE:0128:0130
3G71:0128:0130
3CCR:01731:01732
3CCR:0128:0130
2OTJ:0128:0130
1DRZ:B24:B27
1YJW:0128:0130
1Q81:A1731:A1732
1YJ9:01731:01732
2J03:B80:B81
2UUA:A1428:A1429
2J01:B80:B81
2QA4:01730:01731
3OHZ:B80:B81
3OHJ:B80:B81
3OH5:B80:B81
2VQE:A1428:A1429
3OHK:B80:B81
3OH7:B80:B81
2UXC:A1428:A1429
3OGY:A1428:A1429
3F1F:A1479:A1481
2J02:A1428:A1429
3R8O:A720:A722
3OHY:A1428:A1429
3OI0:A1428:A1429
3R8N:A720:A722
3OHD:A1428:A1429
3OHC:A1428:A1429
3KNK:A131:A132
2J01:A131:A132
2J03:A131:A132
1K8A:A855:A857
3U5H:51192:51193
3OH7:A131:A132
3KNI:A1415:A1417
3OHK:A279:A280
3CCE:0855:0857
3OHJ:A279:A280
2QEX:0855:0857
3OH5:A131:A132
1NJI:A855:A857
3CCR:0855:0857
3F1F:A131:A132
3F1H:A131:A132
1Q81:A855:A857
3CCQ:0855:0857
3OHZ:A1409:A1411
3R8T:A774:A776
3OI1:A1409:A1411
1YJN:0855:0857
1YJ9:0855:0857
3CCV:0855:0857
1S72:0855:0857
3CME:0855:0857
1VQ5:0855:0857
1JJ2:0855:0857
1QVG:0855:0857
1YHQ:0855:0857
3CXC:0855:0857
3OHK:A1409:A1411
3CCU:0855:0857
2J01:A279:A280
3G71:0855:0857
1YI2:0855:0857
3OHZ:A131:A132
1YIJ:0855:0857
1VQ4:0855:0857
3R8S:A774:A776
3CCJ:0855:0857
3OI1:A131:A132
3CC4:0855:0857
1VQK:0855:0857
1VQO:0855:0857
3G6E:0855:0857
1VQ9:0855:0857
3CMA:0855:0857
3OH5:A279:A280
3U5F:6895:6896
3U5D:1851:1853
3U5H:5857:5859
2QA4:0854:0856
1P79:A0:A2
2J03:A1409:A1411
3KNI:A279:A280
3F1F:A282:A284
3F1H:A282:A284
3KNK:A279:A280
2J03:A2507:A2768
2J01:A2507:A2768
3U5F:6230:6231
2AZX:D8:D44
3EPH:E7:E43
2AZX:C8:C44
3KNH:X8:X46
3U5D:1417:12192
2OIU:P7:P44
1J8G:B1:D1
2J02:V8:V46
3R8S:A2133:A2145
2UUA:A1004:A1008
3U5H:5626:5737
1KUQ:B29:B39
1KXK:A28:A44
3CXC:0792:0796
1Q81:A792:A796
1Q82:A792:A796
2OTL:0792:0796
1M90:A792:A796
1QVG:0792:0796
1KD1:A792:A796
3OHC:A70:A83
1N8R:A792:A796
1FFK:0791:0795
3OHD:A70:A83
1JJ2:0792:0796
1S72:0792:0796
3BT7:C0:D0
1VQL:0792:0796
3OH5:A2022:A2024
3OH7:A2022:A2024
3F1G:A982:A994
3F1E:A982:A994
3CPW:0792:0796
3OHY:A70:A83
2ZUF:B0:B74
3CC7:0792:0796
3CCL:0792:0796
3U5B:2272:2283
1YIT:0792:0796
3CCQ:0792:0796
1YJN:0792:0796
3DH3:G20:H1
3CCU:0792:0796
3F1F:A620:A676
2UUB:A1004:A1008
3F1H:A620:A676
3SUH:X65:X69
2OTJ:0792:0796
3CME:0792:0796
3CC4:0792:0796
2QEX:0792:0796
3CC2:0792:0796
3NDB:M40:M44
1VQ6:0792:0796
3SUX:X65:X69
3OGE:A70:A83
3R1D:A8:B3
3OGY:A70:A83
480D:A12:A16
3I56:0792:0796
3ADC:D53:D57
3OHJ:A2022:A2024
3OHK:A2022:A2024
3DW7:A12:A16
1F7Y:B29:B39
3F1H:A631:A636
1LNG:B23:B27
1Z43:A25:A29
3R1E:A5:B3
2J02:A1111:A1119
3F1F:A2135:A2145
1DK1:B29:B39
3F1H:A2135:A2145
483D:A1:A26
1Q9A:A1:A26
2QA4:071:084
3DW5:A1:A26
3DW7:A1:A26
1H4S:T15:T55
3CCR:0792:0796
3DW6:A12:A16
3ADB:D53:D57
439D:A6:B2
3OHZ:A2022:A2024
3OI1:A2022:A2024
3CCS:0792:0796
1H4Q:T15:T55
1KH6:A37:A39
2ZUE:B0:B74
3ADL:B9:C1
3R8T:A2132:A2144
3OGE:A1111:A1119
480D:A1:A26
3PDR:A51:A61
1Q81:A71:A84
3OGY:A1111:A1119
3OHY:A1111:A1119
3OI0:A1111:A1119
2NOK:C21:D2
3DVZ:A1:A26
3R8S:A84:A97
3OHD:A1111:A1119
3OHC:A1111:A1119
2V3C:M21:M25
3HHN:C47:C50
1G1X:D37:E18
2VQF:A1004:A1008
2W89:C6:D1
1KD1:A71:A84
3ADC:C49:C53
1Q82:A71:A84
2OTL:071:084
2Y9H:L7:L11
2G91:A5:B3
1QVG:071:084
1VQN:071:084
1T0E:A16:C1
3CCQ:071:084
3JXQ:A3:B3
1N8R:A71:A84
1JJ2:071:084
3OHY:A666:A678
1FFK:071:084
1K9M:A71:A84
3CPW:071:084
3R1C:A2:B6
3DW4:A1:A26
1VQO:071:084
3KNH:A70:A74
430D:A13:A17
1VQP:071:084
3CD6:071:084
2ZJR:X952:X1030
2OTJ:071:084
1YHQ:071:084
1VQ9:071:084
3CC4:071:084
3CC2:071:084
1VQ5:071:084
1VQM:071:084
3CC7:071:084
1M90:A71:A84
3JXR:A1:B5
3NPQ:B29:B41
3NPQ:A29:A43
3CCJ:071:084
3CCL:071:084
1VQK:071:084
3F1F:A78:A91
3CCR:071:084
1YIT:071:084
2QEX:071:084
1U1Y:S1:S14
1YJ9:071:084
3R1C:E2:F6
1NJI:A71:A84
3F1H:A78:A91
1YI2:071:084
2IZN:S3:S9
3CXC:071:084
2HW8:B11:B21
1YIJ:071:084
2O3V:A20:B2
1YFG:A17:A55
3R1C:S6:Y2
3CCM:071:084
3R1C:V2:Z6
1Q86:A71:A84
3CCU:071:084
1YJW:071:084
3KNI:A2056:A2066
3NPN:A29:A42
2G5Q:A19:B2
3CCE:071:084
2F4T:A19:B4
1YJN:071:084
3G6E:071:084
3I56:071:084
1YRJ:A21:B3
3U5H:51902:51906
2R20:A11:B2
3CMA:071:084
1ZHO:H12:H22
2R1S:A11:B2
1ASZ:R29:R40
2O3W:A20:B2
1G1X:I37:J18
2QUX:O6:O20
2ESI:A21:B2
3R1C:O6:P2
2R21:A11:B2
2ESJ:A19:B2
3L25:C1:F7
2ET8:A19:B2
2R22:A11:B2
1J7T:A19:B2
2F4S:A19:B2
2PN4:C21:D2
1YYO:E11:F1
353D:A9:B3
5MSF:S1:S14
3B5F:A12:B1
3G71:071:084
2PN3:A21:B2
3F1E:A70:A83
3JXQ:A5:B1
2Q1O:C11:D1
2FQN:A20:B2
3L25:C7:F1
1LC4:A19:B2
2PWT:A19:B2
3OG8:C11:D3
1YYK:E9:F3
2BGG:R6:S0
3BBK:A12:B1
2Q1O:A11:B1
2A04:A13:B1
1YZ9:E8:F1
1Q2R:F5:F16
3JXQ:K1:L5
2PN4:A21:B2
3ADB:D0:D88
3MEI:A21:B2
2D2L:C15:D2
2BEE:A19:B2
2BGG:P6:Q0
2NPY:A12:B1
3JXR:A3:B3
2BE0:A19:B2
3B58:A12:B1
1YYK:E11:F1
1MWL:A19:B2
1RC7:B7:C3
5MSF:R2:R15
1R9F:B17:C2
3GS8:A12:B1
2P7D:C15:D2
3GS8:C15:D2
3B5S:B28:C2
3GS1:A12:B1
3I2Q:B28:C2
2P7F:C15:D2
3I2U:B28:C2
2P7E:C15:D2
1ZFT:C15:D2
2BCY:A12:B1
1U1Y:R2:R15
3B5A:B28:C2
157D:A11:B1
3BBI:A12:B1
3I2R:B28:C2
3BBM:A12:B1
3GS5:C15:C19
1X9C:A12:B1
2P7F:A12:B1
3CR1:B28:C2
3CR1:A12:B1
2OUE:A12:B1
3GS5:A12:A14
1ZFV:A12:B1
3CCS:0855:0857
1Q86:A855:A857
2OTL:0855:0857
1YJW:0855:0857
1KD1:A855:A857
3OH5:A1409:A1411
1VQL:0855:0857
1N8R:A855:A857
3OHK:A131:A132
3OHJ:A131:A132
3OH7:A1409:A1411
1Q82:A855:A857
3CCL:0855:0857
3OHJ:A1409:A1411
1VQM:0855:0857
1YIT:0855:0857
1VQ6:0855:0857
2OTJ:0855:0857
2D2K:A12:B1
3H5X:P4:T5
3BSO:P4:T5
3EQT:C6:D2
3BNO:A19:B2
2G5K:A20:B3
7MSF:R2:R12
2QUX:L6:L20
2O3Y:A20:B2
3ADD:D0:D86
2O3X:A19:B2
1Q2R:E5:E16
2D2K:C15:D2
2YKG:C8:D2
3H5Y:P4:T5
2BCZ:A12:B1
3TMI:B10:C2
3HHN:E47:E50
3S4P:A19:B2
3I2S:A12:B1
1RPU:C18:D1
3BNP:A20:B2
2BGG:R3:S3
2BCY:C15:D2
2D2L:A12:B1
3BSN:P5:T5
3CQS:B28:C2
1O9M:A19:B2
402D:A7:B1
1ZFT:A12:B1
2W89:A6:B1
3I2U:A12:B1
1ZFV:C15:D2
1ZFX:A12:B1
2FGP:C15:D2
3BBK:B28:C2
1LNT:A11:B1
2NPY:C15:D2
1ZFX:C15:D2
3BNL:A20:B3
1ZX7:A13:B1
3I2S:B28:C2
1X9C:C15:D2
3B5F:B28:C2
3B91:B28:C2
402D:A1:B7
3I2R:A12:B1
Closest classifer groups: show all      show selected
Group Members RMSD
stacking/<> 654 0.856
base-ribose/W_5BR 121 0.858
stacking/>> 2466 1.713
base-phosphate/H_9BPh 376 1.828
stacking/<< 3714 1.844
bp/HS_cis 1 2.134
bp/SH_cis 1 2.134
bp/WS_tran 11 2.143
bp/SW_cis 252 2.152
bp/WH_tran 14 2.210

Extra

PDB:download
Reference image (generated by PyMOL):
pymol image
show in jmol
All members (generated by PyMOL):
pymol image
show in jmol