sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1319-A1281
X
>3R8S-A1319-A1281
X
>1K9M-A2260-A2245
X
>1S72-02260-02245
X
>3I56-02260-02245
X
>1YJ9-02260-02245
X
>1VQ6-02260-02245
X
>1YI2-02260-02245
X
>1VQ5-02260-02245
X
>1VQ4-02260-02245
X
>1VQ7-02260-02245
X
</seq>
<hsp>
0 1:0.468000998959
0 2:0.999999944435
0 3:0.982632402773
0 4:0.844479009736
0 5:0.95889670214
0 6:0.926968547947
0 7:0.959950904913
0 8:0.832849264585
0 9:0.886467988227
0 10:0.859754302399
1 2:0.720438642447
1 3:0.696176453783
1 4:0.597840941866
1 5:0.665806681521
1 6:0.670246914051
1 7:0.669411880657
1 8:0.574825398286
1 9:0.614376468991
1 10:0.577326028083
2 3:0.0751056025588
2 4:0.254034255657
2 5:0.129454286189
2 6:0.115443289753
2 7:0.1059925635
2 8:0.208904825242
2 9:0.176215668828
2 10:0.17185535062
3 4:0.269608589112
3 5:0.169718358373
3 6:0.155543921955
3 7:0.131866959896
3 8:0.216992957926
3 9:0.172938804537
3 10:0.158841158174
4 5:0.213483937747
4 6:0.177833227664
4 7:0.198674427891
4 8:0.0983619828463
4 9:0.111572548348
4 10:0.156522293386
5 6:0.0999870379955
5 7:0.0605586150526
5 8:0.162445448996
5 9:0.165576939805
5 10:0.149924362757
6 7:0.0856628841165
6 8:0.126117444359
6 9:0.138787730576
6 10:0.134377062339
7 8:0.145106167399
7 9:0.13055061313
7 10:0.120954892692
8 9:0.0872670105112
8 10:0.0811212110533
9 10:0.0740271942353
</hsp>