sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1281-A1319
X
>3R8S-A1281-A1319
X
>1K9M-A2245-A2260
X
>1S72-02245-02260
X
>3I56-02245-02260
X
>1YJ9-02245-02260
X
>1VQ6-02245-02260
X
>1YI2-02245-02260
X
>1VQ5-02245-02260
X
>1VQ4-02245-02260
X
>1VQ7-02245-02260
X
</seq>
<hsp>
0 1:0.468003828505
0 2:0.99999533259
0 3:0.98263492823
0 4:0.844475284695
0 5:0.958895328887
0 6:0.926966960678
0 7:0.959946547415
0 8:0.832850602961
0 9:0.886463226447
0 10:0.859749855569
1 2:0.720437733883
1 3:0.696174902715
1 4:0.597838955449
1 5:0.665802880157
1 6:0.670245630659
1 7:0.669413556509
1 8:0.574824085734
1 9:0.614373520564
1 10:0.577326625709
2 3:0.0751027495733
2 4:0.254029968782
2 5:0.129456777823
2 6:0.115442838509
2 7:0.105992260602
2 8:0.208905571168
2 9:0.176220022993
2 10:0.171850181221
3 4:0.269605145946
3 5:0.169718370739
3 6:0.155544413573
3 7:0.131867346673
3 8:0.216991366303
3 9:0.172937690153
3 10:0.158841538292
4 5:0.213483168759
4 6:0.177834550778
4 7:0.198672360586
4 8:0.0983632405047
4 9:0.111571069075
4 10:0.1565240723
5 6:0.0999871390817
5 7:0.060558595367
5 8:0.162443311211
5 9:0.165578125793
5 10:0.149923835539
6 7:0.085664392262
6 8:0.126120315046
6 9:0.138790187535
6 10:0.13437813883
7 8:0.145105992389
7 9:0.130549440376
7 10:0.120956252778
8 9:0.0872675678032
8 10:0.0811218777553
9 10:0.0740248987541
</hsp>