ClaRNA

Doublet Group distance statistics: 3128

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Distances from reference structure (by RMSD)

25, 32, 9, 3, 2, 4, 49, 2, 2, 10, 2, 28, 15, 17, 46, 23, 13, 14, 13, 44,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.215, 0.636, 1.057, 2.088 max_d=2.088 avg_d=0.636 std_dev=0.421
C6 A 0, 0.247, 0.754, 1.260, 2.014 max_d=2.014 avg_d=0.754 std_dev=0.506
C5 A 0, 0.369, 0.941, 1.512, 2.293 max_d=2.293 avg_d=0.941 std_dev=0.572
N1 A 0, 0.059, 0.657, 1.255, 2.456 max_d=2.456 avg_d=0.657 std_dev=0.598
C6 B 0, 0.270, 0.913, 1.556, 3.571 max_d=3.571 avg_d=0.913 std_dev=0.643
C1' B 0, 0.455, 1.144, 1.833, 2.917 max_d=2.917 avg_d=1.144 std_dev=0.689
C2 A 0, 0.177, 0.944, 1.711, 3.715 max_d=3.715 avg_d=0.944 std_dev=0.767
C4 A 0, 0.285, 1.055, 1.824, 3.593 max_d=3.593 avg_d=1.055 std_dev=0.770
N3 A 0, 0.296, 1.103, 1.910, 4.186 max_d=4.186 avg_d=1.103 std_dev=0.807
C2 B 0, 0.470, 1.290, 2.110, 3.224 max_d=3.224 avg_d=1.290 std_dev=0.820
C1' A 0, 0.204, 1.073, 1.942, 3.445 max_d=3.445 avg_d=1.073 std_dev=0.869
C5 B 0, 0.398, 1.334, 2.271, 4.998 max_d=4.998 avg_d=1.334 std_dev=0.936
O4' B 0, 0.522, 1.563, 2.604, 4.908 max_d=4.908 avg_d=1.563 std_dev=1.041
O4' A 0, 0.038, 1.099, 2.160, 4.156 max_d=4.156 avg_d=1.099 std_dev=1.061
O2 A 0, 0.345, 1.408, 2.471, 4.811 max_d=4.811 avg_d=1.408 std_dev=1.063
O4 A 0, 0.404, 1.491, 2.578, 5.380 max_d=5.380 avg_d=1.491 std_dev=1.087
C4 B 0, 0.298, 1.428, 2.558, 5.196 max_d=5.196 avg_d=1.428 std_dev=1.130
N3 B 0, 0.272, 1.433, 2.593, 4.655 max_d=4.655 avg_d=1.433 std_dev=1.161
O2 B 0, 0.817, 2.047, 3.278, 4.625 max_d=4.625 avg_d=2.047 std_dev=1.230
C2' B 0, 0.627, 1.863, 3.098, 4.330 max_d=4.330 avg_d=1.863 std_dev=1.236
C2' A 0, 0.397, 1.634, 2.871, 4.350 max_d=4.350 avg_d=1.634 std_dev=1.237
C4' A 0, 0.179, 1.577, 2.974, 5.873 max_d=5.873 avg_d=1.577 std_dev=1.397
C3' A 0, 0.363, 1.835, 3.307, 5.252 max_d=5.252 avg_d=1.835 std_dev=1.472
O5' A 0, 0.468, 2.030, 3.591, 7.555 max_d=7.555 avg_d=2.030 std_dev=1.561
O2' B 0, 0.965, 2.534, 4.103, 6.383 max_d=6.383 avg_d=2.534 std_dev=1.569
O4 B 0, 0.475, 2.045, 3.615, 7.346 max_d=7.346 avg_d=2.045 std_dev=1.570
O2' A 0, 0.619, 2.229, 3.839, 6.867 max_d=6.867 avg_d=2.229 std_dev=1.610
C5' A 0, 0.259, 1.903, 3.547, 7.311 max_d=7.311 avg_d=1.903 std_dev=1.644
C4' B 0, 0.277, 1.933, 3.590, 6.625 max_d=6.625 avg_d=1.933 std_dev=1.657
C3' B 0, 0.274, 2.043, 3.812, 6.225 max_d=6.225 avg_d=2.043 std_dev=1.769
O3' A 0, 0.591, 2.521, 4.450, 6.473 max_d=6.473 avg_d=2.521 std_dev=1.930
P A 0, 0.664, 2.780, 4.896, 10.285 max_d=10.285 avg_d=2.780 std_dev=2.116
O5' B 0, 0.682, 2.867, 5.052, 8.178 max_d=8.178 avg_d=2.867 std_dev=2.185
C5' B 0, 0.515, 2.741, 4.967, 8.417 max_d=8.417 avg_d=2.741 std_dev=2.226
O3' B 0, 0.294, 2.626, 4.958, 7.916 max_d=7.916 avg_d=2.626 std_dev=2.332
OP1 A 0, 0.761, 3.159, 5.557, 12.090 max_d=12.090 avg_d=3.159 std_dev=2.398
OP2 A 0, 0.867, 3.413, 5.959, 10.943 max_d=10.943 avg_d=3.413 std_dev=2.546
P B 0, 1.099, 4.045, 6.992, 10.264 max_d=10.264 avg_d=4.045 std_dev=2.946
OP2 B 0, 1.195, 4.223, 7.252, 11.973 max_d=11.973 avg_d=4.223 std_dev=3.028
OP1 B 0, 1.314, 4.868, 8.422, 12.738 max_d=12.738 avg_d=4.868 std_dev=3.554

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.08 0.02 0.01 0.02 0.05 0.03 0.33 0.03 0.01 0.21 0.29 0.34 0.24
C2 0.03 0.00 0.20 0.30 0.02 0.16 0.02 0.26 0.01 0.01 0.01 0.01 0.25 0.22 0.02 0.16 0.44 0.65 0.71 0.51
C2' 0.01 0.20 0.00 0.01 0.07 0.02 0.16 0.21 0.19 0.03 0.14 0.36 0.01 0.04 0.08 0.02 0.51 0.48 0.68 0.55
C3' 0.02 0.30 0.01 0.00 0.39 0.01 0.40 0.03 0.35 0.24 0.36 0.34 0.03 0.01 0.42 0.02 0.24 0.31 0.43 0.24
C4 0.02 0.02 0.07 0.39 0.00 0.16 0.01 0.26 0.01 0.02 0.01 0.02 0.40 0.19 0.01 0.04 0.59 0.69 1.20 0.73
C4' 0.01 0.16 0.02 0.01 0.16 0.00 0.25 0.01 0.26 0.10 0.14 0.29 0.31 0.03 0.17 0.01 0.02 0.15 0.31 0.08
C5 0.02 0.02 0.16 0.40 0.01 0.25 0.00 0.39 0.01 0.01 0.01 0.02 0.44 0.26 0.01 0.14 0.70 0.74 1.29 0.86
C5' 0.08 0.26 0.21 0.03 0.26 0.01 0.39 0.00 0.38 0.14 0.24 0.48 0.13 0.23 0.28 0.02 0.01 0.21 0.33 0.02
C6 0.02 0.01 0.19 0.35 0.01 0.26 0.01 0.38 0.00 0.01 0.01 0.02 0.39 0.21 0.02 0.18 0.64 0.62 1.01 0.73
N1 0.01 0.01 0.03 0.24 0.02 0.10 0.01 0.14 0.01 0.00 0.01 0.02 0.23 0.13 0.02 0.02 0.37 0.43 0.62 0.41
N3 0.02 0.01 0.14 0.36 0.01 0.14 0.01 0.24 0.01 0.01 0.00 0.01 0.32 0.17 0.01 0.12 0.51 0.71 0.95 0.61
O2 0.05 0.01 0.36 0.34 0.02 0.29 0.02 0.48 0.02 0.02 0.01 0.00 0.28 0.40 0.02 0.29 0.60 0.89 0.76 0.70
O2' 0.03 0.25 0.01 0.03 0.40 0.31 0.44 0.13 0.39 0.23 0.32 0.28 0.00 0.07 0.43 0.22 0.38 0.36 0.76 0.48
O3' 0.33 0.22 0.04 0.01 0.19 0.03 0.26 0.23 0.21 0.13 0.17 0.40 0.07 0.00 0.23 0.23 0.29 0.54 0.58 0.36
O4 0.03 0.02 0.08 0.42 0.01 0.17 0.01 0.28 0.02 0.02 0.01 0.02 0.43 0.23 0.00 0.05 0.63 0.77 1.34 0.81
O4' 0.01 0.16 0.02 0.02 0.04 0.01 0.14 0.02 0.18 0.02 0.12 0.29 0.22 0.23 0.05 0.00 0.16 0.29 0.29 0.23
O5' 0.21 0.44 0.51 0.24 0.59 0.02 0.70 0.01 0.64 0.37 0.51 0.60 0.38 0.29 0.63 0.16 0.00 0.02 0.03 0.01
OP1 0.29 0.65 0.48 0.31 0.69 0.15 0.74 0.21 0.62 0.43 0.71 0.89 0.36 0.54 0.77 0.29 0.02 0.00 0.02 0.01
OP2 0.34 0.71 0.68 0.43 1.20 0.31 1.29 0.33 1.01 0.62 0.95 0.76 0.76 0.58 1.34 0.29 0.03 0.02 0.00 0.01
P 0.24 0.51 0.55 0.24 0.73 0.08 0.86 0.02 0.73 0.41 0.61 0.70 0.48 0.36 0.81 0.23 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 1.09 2.05 0.93 1.01 2.21 1.02 1.77 1.28 1.43 1.51 2.35 2.24 1.08 1.50 2.46 0.91 1.16 1.85 1.30 1.39
C2 0.88 1.83 0.56 0.51 1.99 0.87 1.58 1.21 1.23 1.29 2.11 2.06 0.84 0.98 2.24 0.90 0.97 1.59 1.08 1.25
C2' 1.39 2.36 1.22 1.22 2.60 1.09 2.19 1.30 1.84 1.86 2.69 2.48 1.31 1.68 2.85 1.14 1.38 1.98 1.62 1.59
C3' 1.24 2.23 1.16 1.37 2.59 1.17 2.19 1.47 1.81 1.74 2.64 2.31 1.14 1.86 2.87 1.02 1.62 2.31 1.96 1.89
C4 0.83 1.54 0.48 0.54 1.73 1.11 1.51 1.51 1.27 1.19 1.77 1.69 0.81 0.76 1.88 1.15 1.32 1.68 1.47 1.57
C4' 1.08 1.91 1.12 1.52 2.26 1.44 1.92 1.84 1.58 1.48 2.29 2.01 1.11 1.98 2.54 1.05 1.88 2.67 2.16 2.18
C5 0.76 1.40 0.48 0.44 1.45 0.86 1.21 1.10 1.02 1.05 1.54 1.57 0.85 0.86 1.56 0.95 0.88 1.20 0.97 1.05
C5' 1.18 1.72 1.34 1.88 2.16 1.77 1.98 2.20 1.72 1.48 2.08 1.70 1.23 2.29 2.41 1.31 2.30 3.03 2.60 2.59
C6 0.91 1.62 0.71 0.72 1.65 0.87 1.33 1.05 1.10 1.20 1.78 1.81 0.96 1.18 1.79 0.88 0.84 1.30 0.89 0.99
N1 0.94 1.83 0.72 0.72 1.93 0.87 1.52 1.11 1.22 1.32 2.07 2.05 0.95 1.21 2.13 0.85 0.90 1.50 0.97 1.11
N3 0.86 1.71 0.48 0.48 1.92 1.03 1.60 1.45 1.30 1.26 1.99 1.90 0.78 0.78 2.14 1.08 1.24 1.75 1.41 1.54
O2 0.91 1.95 0.59 0.54 2.16 0.88 1.69 1.25 1.31 1.37 2.28 2.19 0.85 1.02 2.46 0.90 1.02 1.72 1.15 1.33
O2' 1.69 2.73 1.45 1.33 3.03 1.24 2.57 1.41 2.19 2.20 3.12 2.82 1.50 1.72 3.30 1.42 1.53 2.06 1.78 1.71
O3' 1.39 2.48 1.23 1.42 2.96 1.22 2.49 1.56 2.04 1.95 2.97 2.52 1.18 1.87 3.31 1.15 1.77 2.48 2.20 2.09
O4 1.00 1.59 0.68 0.86 1.91 1.46 1.80 1.96 1.58 1.35 1.86 1.66 0.88 0.83 2.07 1.45 1.83 2.15 2.04 2.12
O4' 1.00 1.82 0.97 1.27 2.01 1.33 1.62 1.66 1.32 1.34 2.12 2.00 1.08 1.72 2.25 0.99 1.53 2.26 1.65 1.77
O5' 1.23 1.69 1.47 1.93 2.07 1.68 1.92 1.94 1.69 1.50 2.00 1.63 1.34 2.38 2.26 1.26 2.06 2.56 2.31 2.23
OP1 1.66 1.77 1.85 2.54 2.49 2.37 2.60 2.79 2.37 1.91 2.12 1.46 1.45 2.63 2.68 1.93 3.06 3.53 3.46 3.30
OP2 1.83 1.96 2.28 2.58 2.41 2.11 2.49 2.27 2.35 2.07 2.18 1.66 2.03 2.78 2.50 1.77 2.56 2.80 2.88 2.67
P 1.61 1.71 1.95 2.52 2.20 2.18 2.25 2.41 2.10 1.79 1.97 1.47 1.62 2.86 2.34 1.73 2.59 2.92 2.84 2.72

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.01 0.03 0.01 0.02 0.09 0.02 0.01 0.03 0.05 0.02 0.28 0.03 0.01 0.22 0.31 0.30 0.21
C2 0.03 0.00 0.18 0.23 0.02 0.08 0.02 0.16 0.01 0.01 0.01 0.01 0.20 0.19 0.03 0.14 0.30 0.41 0.50 0.31
C2' 0.01 0.18 0.00 0.01 0.08 0.02 0.14 0.20 0.17 0.04 0.14 0.31 0.01 0.03 0.10 0.02 0.39 0.47 0.52 0.43
C3' 0.01 0.23 0.01 0.00 0.36 0.01 0.37 0.03 0.33 0.22 0.30 0.21 0.03 0.01 0.39 0.02 0.14 0.26 0.22 0.14
C4 0.03 0.02 0.08 0.36 0.00 0.15 0.01 0.23 0.01 0.02 0.01 0.02 0.35 0.20 0.01 0.04 0.47 0.56 0.87 0.53
C4' 0.01 0.08 0.02 0.01 0.15 0.00 0.22 0.01 0.22 0.08 0.09 0.16 0.28 0.03 0.16 0.01 0.02 0.20 0.21 0.09
C5 0.02 0.02 0.14 0.37 0.01 0.22 0.00 0.30 0.01 0.01 0.01 0.02 0.41 0.26 0.01 0.13 0.57 0.62 0.96 0.63
C5' 0.09 0.16 0.20 0.03 0.23 0.01 0.30 0.00 0.28 0.13 0.17 0.25 0.11 0.21 0.25 0.02 0.01 0.20 0.23 0.02
C6 0.02 0.01 0.17 0.33 0.01 0.22 0.01 0.28 0.00 0.01 0.01 0.02 0.37 0.20 0.02 0.16 0.52 0.51 0.75 0.52
N1 0.01 0.01 0.04 0.22 0.02 0.08 0.01 0.13 0.01 0.00 0.01 0.02 0.20 0.11 0.02 0.02 0.32 0.37 0.48 0.31
N3 0.03 0.01 0.14 0.30 0.01 0.09 0.01 0.17 0.01 0.01 0.00 0.02 0.27 0.15 0.02 0.10 0.37 0.47 0.67 0.40
O2 0.05 0.01 0.31 0.21 0.02 0.16 0.02 0.25 0.02 0.02 0.02 0.00 0.28 0.34 0.03 0.24 0.33 0.46 0.44 0.36
O2' 0.02 0.20 0.01 0.03 0.35 0.28 0.41 0.11 0.37 0.20 0.27 0.28 0.00 0.07 0.38 0.19 0.29 0.44 0.57 0.37
O3' 0.28 0.19 0.03 0.01 0.20 0.03 0.26 0.21 0.20 0.11 0.15 0.34 0.07 0.00 0.25 0.20 0.26 0.49 0.40 0.33
O4 0.03 0.03 0.10 0.39 0.01 0.16 0.01 0.25 0.02 0.02 0.02 0.03 0.38 0.25 0.00 0.05 0.50 0.62 0.97 0.58
O4' 0.01 0.14 0.02 0.02 0.04 0.01 0.13 0.02 0.16 0.02 0.10 0.24 0.19 0.20 0.05 0.00 0.19 0.27 0.27 0.20
O5' 0.22 0.30 0.39 0.14 0.47 0.02 0.57 0.01 0.52 0.32 0.37 0.33 0.29 0.26 0.50 0.19 0.00 0.02 0.03 0.01
OP1 0.31 0.41 0.47 0.26 0.56 0.20 0.62 0.20 0.51 0.37 0.47 0.46 0.44 0.49 0.62 0.27 0.02 0.00 0.02 0.01
OP2 0.30 0.50 0.52 0.22 0.87 0.21 0.96 0.23 0.75 0.48 0.67 0.44 0.57 0.40 0.97 0.27 0.03 0.02 0.00 0.01
P 0.21 0.31 0.43 0.14 0.53 0.09 0.63 0.02 0.52 0.31 0.40 0.36 0.37 0.33 0.58 0.20 0.01 0.01 0.01 0.00