ClaRNA

Doublet Group distance statistics: 32346

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Distances from reference structure (by RMSD)

21, 12, 12, 41, 14, 54, 43, 6, 5, 32, 2, 18, 23, 1, 18, 19, 1, 0, 31, 147,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 A 0, 0.191, 0.365, 0.538, 0.767 max_d=0.767 avg_d=0.365 std_dev=0.174
C4 B 0, 0.176, 0.371, 0.566, 0.796 max_d=0.796 avg_d=0.371 std_dev=0.195
C5 B 0, 0.336, 0.758, 1.180, 2.063 max_d=2.063 avg_d=0.758 std_dev=0.422
N3 B 0, 0.274, 0.780, 1.287, 1.946 max_d=1.946 avg_d=0.780 std_dev=0.507
C5 A 0, 0.366, 0.883, 1.399, 2.649 max_d=2.649 avg_d=0.883 std_dev=0.516
N3 A 0, 0.210, 0.860, 1.511, 2.571 max_d=2.571 avg_d=0.860 std_dev=0.651
N9 B 0, 0.415, 1.074, 1.733, 2.573 max_d=2.573 avg_d=1.074 std_dev=0.659
C2 B 0, 0.436, 1.129, 1.821, 2.804 max_d=2.804 avg_d=1.129 std_dev=0.693
C6 B 0, 0.383, 1.138, 1.892, 2.849 max_d=2.849 avg_d=1.138 std_dev=0.755
N9 A 0, 0.391, 1.171, 1.952, 2.911 max_d=2.911 avg_d=1.171 std_dev=0.781
N7 B 0, 0.632, 1.431, 2.230, 3.267 max_d=3.267 avg_d=1.431 std_dev=0.799
N1 B 0, 0.477, 1.299, 2.121, 3.052 max_d=3.052 avg_d=1.299 std_dev=0.822
C8 B 0, 0.672, 1.514, 2.355, 3.588 max_d=3.588 avg_d=1.514 std_dev=0.842
C6 A 0, 0.417, 1.357, 2.297, 4.006 max_d=4.006 avg_d=1.357 std_dev=0.940
C2 A 0, 0.330, 1.291, 2.252, 3.820 max_d=3.820 avg_d=1.291 std_dev=0.961
N7 A 0, 0.570, 1.609, 2.648, 4.623 max_d=4.623 avg_d=1.609 std_dev=1.039
C8 A 0, 0.565, 1.670, 2.776, 4.523 max_d=4.523 avg_d=1.670 std_dev=1.106
N1 A 0, 0.393, 1.508, 2.623, 4.456 max_d=4.456 avg_d=1.508 std_dev=1.115
C1' B 0, 0.504, 1.671, 2.839, 3.810 max_d=3.810 avg_d=1.671 std_dev=1.168
N6 B 0, 0.550, 1.822, 3.094, 4.635 max_d=4.635 avg_d=1.822 std_dev=1.272
C2' B 0, 1.277, 2.621, 3.966, 5.182 max_d=5.182 avg_d=2.621 std_dev=1.345
C1' A 0, 0.484, 1.835, 3.186, 4.839 max_d=4.839 avg_d=1.835 std_dev=1.351
O4' B 0, 1.222, 2.649, 4.076, 4.967 max_d=4.967 avg_d=2.649 std_dev=1.427
N6 A 0, 0.599, 2.151, 3.703, 6.354 max_d=6.354 avg_d=2.151 std_dev=1.552
C2' A 0, 0.836, 2.483, 4.130, 6.692 max_d=6.692 avg_d=2.483 std_dev=1.647
O2' B 0, 1.675, 3.475, 5.275, 6.266 max_d=6.266 avg_d=3.475 std_dev=1.800
O4' A 0, 0.723, 2.546, 4.369, 6.578 max_d=6.578 avg_d=2.546 std_dev=1.823
C3' B 0, 1.555, 3.426, 5.297, 6.452 max_d=6.452 avg_d=3.426 std_dev=1.871
O2' A 0, 1.458, 3.406, 5.354, 8.350 max_d=8.350 avg_d=3.406 std_dev=1.948
C4' B 0, 1.551, 3.526, 5.502, 6.558 max_d=6.558 avg_d=3.526 std_dev=1.975
C3' A 0, 1.019, 3.085, 5.152, 8.708 max_d=8.708 avg_d=3.085 std_dev=2.066
O3' B 0, 1.580, 3.797, 6.015, 7.579 max_d=7.579 avg_d=3.797 std_dev=2.218
C4' A 0, 0.889, 3.263, 5.637, 9.093 max_d=9.093 avg_d=3.263 std_dev=2.374
O3' A 0, 1.403, 3.926, 6.449, 11.124 max_d=11.124 avg_d=3.926 std_dev=2.523
C5' B 0, 2.280, 4.930, 7.580, 9.178 max_d=9.178 avg_d=4.930 std_dev=2.650
O5' A 0, 1.628, 4.402, 7.176, 10.721 max_d=10.721 avg_d=4.402 std_dev=2.774
C5' A 0, 1.376, 4.151, 6.926, 11.001 max_d=11.001 avg_d=4.151 std_dev=2.775
O5' B 0, 2.223, 5.229, 8.235, 9.860 max_d=9.860 avg_d=5.229 std_dev=3.006
P A 0, 1.936, 5.480, 9.023, 12.900 max_d=12.900 avg_d=5.480 std_dev=3.544
OP2 A 0, 2.227, 6.090, 9.952, 13.488 max_d=13.488 avg_d=6.090 std_dev=3.862
OP1 A 0, 2.011, 6.105, 10.200, 15.396 max_d=15.396 avg_d=6.105 std_dev=4.095
P B 0, 2.586, 6.784, 10.982, 12.194 max_d=12.194 avg_d=6.784 std_dev=4.198
OP1 B 0, 3.390, 7.827, 12.265, 13.445 max_d=13.445 avg_d=7.827 std_dev=4.438
OP2 B 0, 2.541, 7.185, 11.828, 13.818 max_d=13.818 avg_d=7.185 std_dev=4.643

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.02 0.01 0.07 0.02 0.01 0.03 0.04 0.02 0.01 0.01 0.02 0.29 0.01 0.28 0.36 0.41 0.30
C2 0.04 0.00 0.39 0.34 0.01 0.31 0.01 0.53 0.01 0.02 0.00 0.00 0.01 0.02 0.01 0.36 0.45 0.35 0.46 0.70 0.90 0.56
C2' 0.01 0.39 0.00 0.01 0.21 0.02 0.11 0.19 0.19 0.19 0.31 0.39 0.14 0.11 0.03 0.00 0.03 0.02 0.51 0.52 0.59 0.50
C3' 0.02 0.34 0.01 0.00 0.27 0.01 0.33 0.03 0.35 0.34 0.35 0.31 0.38 0.36 0.21 0.02 0.01 0.03 0.36 0.45 0.34 0.28
C4 0.02 0.01 0.21 0.27 0.00 0.13 0.00 0.24 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.23 0.27 0.18 0.40 0.57 0.78 0.46
C4' 0.02 0.31 0.02 0.01 0.13 0.00 0.11 0.01 0.13 0.28 0.22 0.30 0.14 0.23 0.09 0.27 0.03 0.01 0.02 0.19 0.34 0.07
C5 0.01 0.01 0.11 0.33 0.00 0.11 0.00 0.23 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.28 0.22 0.08 0.60 0.84 1.10 0.73
C5' 0.07 0.53 0.19 0.03 0.24 0.01 0.23 0.00 0.27 0.46 0.40 0.49 0.28 0.41 0.16 0.11 0.20 0.02 0.01 0.33 0.40 0.02
C6 0.02 0.01 0.19 0.35 0.01 0.13 0.01 0.27 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.30 0.28 0.15 0.54 0.80 1.12 0.67
C8 0.01 0.02 0.19 0.34 0.01 0.28 0.01 0.46 0.01 0.00 0.02 0.01 0.03 0.00 0.01 0.37 0.20 0.21 0.92 1.14 1.24 1.07
N1 0.03 0.00 0.31 0.35 0.01 0.22 0.01 0.40 0.00 0.02 0.00 0.01 0.01 0.02 0.01 0.31 0.38 0.27 0.45 0.70 0.99 0.55
N3 0.04 0.00 0.39 0.31 0.01 0.30 0.01 0.49 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.34 0.44 0.35 0.41 0.60 0.75 0.47
N6 0.02 0.01 0.14 0.38 0.01 0.14 0.01 0.28 0.00 0.03 0.01 0.01 0.00 0.03 0.02 0.33 0.28 0.10 0.66 0.97 1.33 0.84
N7 0.01 0.02 0.11 0.36 0.01 0.23 0.00 0.41 0.01 0.00 0.02 0.01 0.03 0.00 0.01 0.37 0.22 0.12 0.90 1.21 1.41 1.11
N9 0.01 0.01 0.03 0.21 0.00 0.09 0.01 0.16 0.01 0.01 0.01 0.01 0.02 0.01 0.00 0.19 0.15 0.01 0.50 0.63 0.75 0.56
O2' 0.02 0.36 0.00 0.02 0.23 0.27 0.28 0.11 0.30 0.37 0.31 0.34 0.33 0.37 0.19 0.00 0.06 0.19 0.32 0.36 0.60 0.36
O3' 0.29 0.45 0.03 0.01 0.27 0.03 0.22 0.20 0.28 0.20 0.38 0.44 0.28 0.22 0.15 0.06 0.00 0.20 0.33 0.55 0.62 0.35
O4' 0.01 0.35 0.02 0.03 0.18 0.01 0.08 0.02 0.15 0.21 0.27 0.35 0.10 0.12 0.01 0.19 0.20 0.00 0.16 0.32 0.33 0.22
O5' 0.28 0.46 0.51 0.36 0.40 0.02 0.60 0.01 0.54 0.92 0.45 0.41 0.66 0.90 0.50 0.32 0.33 0.16 0.00 0.02 0.02 0.01
OP1 0.36 0.70 0.52 0.45 0.57 0.19 0.84 0.33 0.80 1.14 0.70 0.60 0.97 1.21 0.63 0.36 0.55 0.32 0.02 0.00 0.02 0.01
OP2 0.41 0.90 0.59 0.34 0.78 0.34 1.10 0.40 1.12 1.24 0.99 0.75 1.33 1.41 0.75 0.60 0.62 0.33 0.02 0.02 0.00 0.01
P 0.30 0.56 0.50 0.28 0.46 0.07 0.73 0.02 0.67 1.07 0.55 0.47 0.84 1.11 0.56 0.36 0.35 0.22 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 1.37 1.22 1.49 1.84 0.78 1.99 0.75 2.33 0.86 1.26 1.01 1.20 1.41 1.27 1.04 1.53 1.78 1.76 2.51 3.23 2.51 2.78
C2 1.13 0.63 0.88 0.99 0.68 1.42 0.62 1.77 0.45 1.08 0.55 0.65 0.70 0.96 0.98 1.14 1.04 1.52 1.42 1.93 1.42 1.56
C2' 1.69 1.31 1.74 2.24 0.85 2.50 0.72 2.85 0.86 1.45 1.02 1.35 1.60 1.39 1.22 1.70 2.19 2.20 3.12 3.81 3.04 3.39
C3' 1.94 1.36 2.15 2.69 1.01 2.81 0.85 3.19 0.78 1.72 0.95 1.46 1.51 1.59 1.47 2.08 2.67 2.37 3.63 4.31 3.73 4.02
C4 0.78 0.80 0.88 0.97 0.51 1.06 0.48 1.39 0.50 0.82 0.69 0.73 0.73 0.82 0.66 1.13 0.96 1.08 1.24 1.85 1.31 1.38
C4' 1.72 1.28 2.03 2.50 0.88 2.53 0.83 2.92 0.84 1.59 0.95 1.31 1.53 1.53 1.29 2.04 2.50 2.08 3.33 4.14 3.53 3.76
C5 0.62 0.70 1.06 0.90 0.42 0.55 0.42 0.83 0.43 0.77 0.66 0.55 0.51 0.71 0.59 1.41 1.02 0.58 0.70 1.21 1.20 0.82
C5' 1.77 1.36 2.21 2.67 0.94 2.51 0.95 2.85 0.94 1.72 1.06 1.33 1.57 1.64 1.37 2.28 2.71 2.01 3.31 4.09 3.70 3.77
C6 0.59 0.56 1.04 0.85 0.35 0.76 0.37 1.14 0.38 0.66 0.48 0.49 0.56 0.63 0.52 1.44 1.02 0.78 0.88 1.14 1.30 0.96
C8 1.18 1.10 1.62 1.66 0.75 1.27 0.79 1.38 0.80 1.37 1.02 0.91 1.10 1.26 1.07 1.84 1.71 1.09 1.68 2.10 2.08 1.85
N1 0.74 0.57 0.82 0.77 0.49 1.06 0.58 1.54 0.43 0.91 0.42 0.51 0.66 0.90 0.71 1.20 0.91 1.12 1.24 1.61 1.49 1.40
N3 1.20 0.75 1.00 1.19 0.69 1.57 0.53 1.89 0.51 0.97 0.65 0.83 0.84 0.87 0.95 1.17 1.16 1.61 1.58 2.16 1.40 1.68
N6 1.18 0.75 1.67 1.55 0.63 1.43 0.45 1.63 0.62 0.88 0.70 0.82 1.00 0.72 0.90 2.03 1.71 1.33 1.50 1.41 1.80 1.46
N7 1.15 0.94 1.66 1.54 0.73 0.98 0.69 0.91 0.67 1.23 0.93 0.78 0.86 1.07 1.04 1.96 1.67 0.87 1.15 1.43 1.70 1.23
N9 1.04 1.07 1.26 1.43 0.66 1.39 0.68 1.67 0.74 1.13 0.93 0.96 1.10 1.12 0.87 1.41 1.40 1.26 1.79 2.39 1.93 1.99
O2' 1.83 1.48 1.81 2.32 1.02 2.72 1.04 3.06 1.32 1.50 1.40 1.46 2.04 1.55 1.31 1.81 2.31 2.38 3.20 4.03 3.00 3.51
O3' 2.11 1.33 2.31 2.97 1.03 3.16 0.88 3.60 0.86 1.81 0.97 1.47 1.66 1.66 1.55 2.23 3.04 2.61 4.06 4.84 4.10 4.57
O4' 1.42 1.22 1.71 2.05 0.79 2.06 0.81 2.41 0.89 1.39 1.00 1.18 1.44 1.38 1.10 1.79 2.04 1.74 2.71 3.46 2.86 3.05
O5' 1.64 1.52 2.14 2.49 0.90 2.27 0.93 2.59 1.07 1.58 1.29 1.36 1.67 1.54 1.25 2.33 2.57 1.80 3.01 3.76 3.57 3.47
OP1 1.85 1.66 2.42 2.90 1.06 2.53 1.10 2.75 1.22 1.74 1.47 1.47 1.76 1.69 1.41 2.62 3.11 1.93 3.17 3.94 3.86 3.64
OP2 1.99 1.67 2.45 2.65 1.42 2.22 1.67 2.36 1.67 2.24 1.63 1.53 2.19 2.29 1.77 2.90 2.94 1.82 2.76 3.59 3.63 3.31
P 1.78 1.63 2.32 2.65 1.12 2.26 1.23 2.47 1.31 1.84 1.47 1.44 1.83 1.83 1.45 2.63 2.86 1.77 2.87 3.63 3.61 3.36

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.02 0.02 0.11 0.02 0.02 0.03 0.04 0.03 0.01 0.01 0.03 0.35 0.01 0.43 0.64 0.40 0.38
C2 0.04 0.00 0.46 0.64 0.01 0.77 0.01 1.41 0.01 0.02 0.01 0.01 0.01 0.02 0.02 0.56 0.52 0.54 1.06 1.40 1.73 1.34
C2' 0.01 0.46 0.00 0.01 0.23 0.02 0.10 0.24 0.19 0.25 0.35 0.47 0.13 0.15 0.03 0.00 0.03 0.02 0.55 0.70 0.68 0.60
C3' 0.02 0.64 0.01 0.00 0.35 0.01 0.32 0.02 0.39 0.46 0.53 0.61 0.38 0.41 0.21 0.02 0.01 0.03 0.32 0.49 0.39 0.34
C4 0.02 0.01 0.23 0.35 0.00 0.35 0.01 0.62 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.38 0.25 0.28 0.35 0.79 0.64 0.31
C4' 0.02 0.77 0.02 0.01 0.35 0.00 0.18 0.01 0.33 0.39 0.59 0.74 0.24 0.26 0.08 0.32 0.03 0.01 0.02 0.29 0.29 0.10
C5 0.02 0.01 0.10 0.32 0.01 0.18 0.00 0.36 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.38 0.17 0.11 0.59 1.12 0.78 0.59
C5' 0.11 1.41 0.24 0.02 0.62 0.01 0.36 0.00 0.63 0.67 1.10 1.30 0.48 0.48 0.18 0.11 0.25 0.02 0.01 0.35 0.39 0.02
C6 0.02 0.01 0.19 0.39 0.01 0.33 0.01 0.63 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.45 0.27 0.23 0.43 1.04 0.79 0.40
C8 0.02 0.02 0.25 0.46 0.01 0.39 0.01 0.67 0.02 0.00 0.02 0.01 0.03 0.00 0.01 0.29 0.26 0.29 1.41 1.80 1.58 1.56
N1 0.03 0.01 0.35 0.53 0.01 0.59 0.01 1.10 0.01 0.02 0.00 0.01 0.01 0.02 0.02 0.53 0.42 0.41 0.69 1.15 1.28 0.87
N3 0.04 0.01 0.47 0.61 0.01 0.74 0.01 1.30 0.01 0.01 0.01 0.00 0.02 0.01 0.01 0.51 0.48 0.55 0.94 1.16 1.46 1.14
N6 0.03 0.01 0.13 0.38 0.01 0.24 0.02 0.48 0.00 0.03 0.01 0.02 0.00 0.04 0.02 0.45 0.24 0.15 0.56 1.23 0.89 0.58
N7 0.01 0.02 0.15 0.41 0.01 0.26 0.00 0.48 0.02 0.00 0.02 0.01 0.04 0.00 0.01 0.33 0.20 0.17 1.25 1.77 1.52 1.43
N9 0.01 0.02 0.03 0.21 0.01 0.08 0.01 0.18 0.01 0.01 0.02 0.01 0.02 0.01 0.00 0.21 0.16 0.02 0.67 0.98 0.68 0.65
O2' 0.03 0.56 0.00 0.02 0.38 0.32 0.38 0.11 0.45 0.29 0.53 0.51 0.45 0.33 0.21 0.00 0.05 0.21 0.42 0.63 0.69 0.51
O3' 0.35 0.52 0.03 0.01 0.25 0.03 0.17 0.25 0.27 0.26 0.42 0.48 0.24 0.20 0.16 0.05 0.00 0.25 0.35 0.62 0.50 0.40
O4' 0.01 0.54 0.02 0.03 0.28 0.01 0.11 0.02 0.23 0.29 0.41 0.55 0.15 0.17 0.02 0.21 0.25 0.00 0.38 0.57 0.37 0.34
O5' 0.43 1.06 0.55 0.32 0.35 0.02 0.59 0.01 0.43 1.41 0.69 0.94 0.56 1.25 0.67 0.42 0.35 0.38 0.00 0.02 0.02 0.01
OP1 0.64 1.40 0.70 0.49 0.79 0.29 1.12 0.35 1.04 1.80 1.15 1.16 1.23 1.77 0.98 0.63 0.62 0.57 0.02 0.00 0.02 0.01
OP2 0.40 1.73 0.68 0.39 0.64 0.29 0.78 0.39 0.79 1.58 1.28 1.46 0.89 1.52 0.68 0.69 0.50 0.37 0.02 0.02 0.00 0.01
P 0.38 1.34 0.60 0.34 0.31 0.10 0.59 0.02 0.40 1.56 0.87 1.14 0.58 1.43 0.65 0.51 0.40 0.34 0.01 0.01 0.01 0.00