ClaRNA

Doublet Group distance statistics: 33655

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Distances from reference structure (by RMSD)

4, 6, 1, 48, 8, 1, 4, 7, 4, 0, 0, 8, 19, 8, 2, 3, 10, 18, 6, 39,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.174, 0.560, 0.946, 1.589 max_d=1.589 avg_d=0.560 std_dev=0.386
C6 A 0, 0.301, 0.770, 1.238, 2.265 max_d=2.265 avg_d=0.770 std_dev=0.469
N1 A 0, 0.053, 0.525, 0.997, 1.830 max_d=1.830 avg_d=0.525 std_dev=0.472
C2 A 0, 0.324, 0.923, 1.523, 2.330 max_d=2.330 avg_d=0.923 std_dev=0.600
C5 A 0, 0.439, 1.127, 1.816, 2.631 max_d=2.631 avg_d=1.127 std_dev=0.689
C1' A 0, 0.262, 1.066, 1.869, 4.353 max_d=4.353 avg_d=1.066 std_dev=0.803
C6 B 0, 0.227, 1.036, 1.844, 3.192 max_d=3.192 avg_d=1.036 std_dev=0.809
N3 A 0, 0.427, 1.249, 2.072, 2.871 max_d=2.871 avg_d=1.249 std_dev=0.822
O2 A 0, 0.589, 1.426, 2.263, 3.926 max_d=3.926 avg_d=1.426 std_dev=0.837
C2 B 0, 0.358, 1.197, 2.037, 3.050 max_d=3.050 avg_d=1.197 std_dev=0.840
C4 A 0, 0.482, 1.324, 2.165, 3.565 max_d=3.565 avg_d=1.324 std_dev=0.842
C1' B 0, 0.195, 1.050, 1.906, 3.690 max_d=3.690 avg_d=1.050 std_dev=0.855
O4' A 0, 0.254, 1.286, 2.318, 5.474 max_d=5.474 avg_d=1.286 std_dev=1.032
C4 B 0, 0.215, 1.315, 2.416, 5.085 max_d=5.085 avg_d=1.315 std_dev=1.100
N3 B 0, 0.348, 1.477, 2.606, 4.464 max_d=4.464 avg_d=1.477 std_dev=1.129
C5 B 0, 0.125, 1.267, 2.410, 4.633 max_d=4.633 avg_d=1.267 std_dev=1.143
C2' A 0, 0.415, 1.593, 2.772, 5.657 max_d=5.657 avg_d=1.593 std_dev=1.178
N4 A 0, 0.637, 1.943, 3.250, 6.034 max_d=6.034 avg_d=1.943 std_dev=1.306
O5' A 0, 1.103, 2.423, 3.743, 6.241 max_d=6.241 avg_d=2.423 std_dev=1.320
C2' B 0, 0.332, 1.686, 3.041, 5.789 max_d=5.789 avg_d=1.686 std_dev=1.355
C4' A 0, 0.232, 1.600, 2.969, 6.943 max_d=6.943 avg_d=1.600 std_dev=1.369
C3' A 0, 0.262, 1.645, 3.029, 6.724 max_d=6.724 avg_d=1.645 std_dev=1.384
O2 B 0, 0.583, 1.985, 3.387, 4.604 max_d=4.604 avg_d=1.985 std_dev=1.402
O4' B 0, 0.208, 1.648, 3.088, 5.152 max_d=5.152 avg_d=1.648 std_dev=1.440
O2' A 0, 0.692, 2.256, 3.820, 7.734 max_d=7.734 avg_d=2.256 std_dev=1.564
O2' B 0, 1.079, 2.643, 4.208, 6.764 max_d=6.764 avg_d=2.643 std_dev=1.564
O3' B 0, 1.540, 3.111, 4.682, 9.147 max_d=9.147 avg_d=3.111 std_dev=1.571
C5' A 0, 0.341, 1.931, 3.522, 6.812 max_d=6.812 avg_d=1.931 std_dev=1.591
C3' B 0, 0.741, 2.349, 3.956, 8.155 max_d=8.155 avg_d=2.349 std_dev=1.608
N4 B 0, 0.345, 1.966, 3.587, 7.698 max_d=7.698 avg_d=1.966 std_dev=1.621
P A 0, 1.401, 3.023, 4.644, 8.505 max_d=8.505 avg_d=3.023 std_dev=1.622
C4' B 0, 0.384, 2.254, 4.124, 7.558 max_d=7.558 avg_d=2.254 std_dev=1.870
O3' A 0, 0.455, 2.330, 4.205, 9.257 max_d=9.257 avg_d=2.330 std_dev=1.875
OP2 A 0, 1.491, 3.373, 5.256, 9.537 max_d=9.537 avg_d=3.373 std_dev=1.882
OP1 A 0, 1.766, 3.748, 5.729, 10.422 max_d=10.422 avg_d=3.748 std_dev=1.981
O5' B 0, 1.444, 3.836, 6.229, 9.673 max_d=9.673 avg_d=3.836 std_dev=2.393
C5' B 0, 0.559, 2.961, 5.364, 8.792 max_d=8.792 avg_d=2.961 std_dev=2.402
OP2 B 0, 1.918, 4.963, 8.009, 11.565 max_d=11.565 avg_d=4.963 std_dev=3.046
P B 0, 1.565, 4.708, 7.852, 11.568 max_d=11.568 avg_d=4.708 std_dev=3.143
OP1 B 0, 1.318, 5.089, 8.860, 13.599 max_d=13.599 avg_d=5.089 std_dev=3.771

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.01 0.02 0.01 0.02 0.07 0.02 0.01 0.02 0.02 0.05 0.02 0.20 0.01 0.27 0.35 0.46 0.29
C2 0.03 0.00 0.18 0.21 0.01 0.09 0.01 0.17 0.01 0.01 0.01 0.01 0.01 0.19 0.17 0.16 0.52 0.57 0.91 0.56
C2' 0.00 0.18 0.00 0.01 0.06 0.01 0.14 0.14 0.19 0.03 0.14 0.06 0.33 0.01 0.03 0.01 0.39 0.62 0.50 0.45
C3' 0.01 0.21 0.01 0.00 0.26 0.01 0.29 0.02 0.26 0.16 0.24 0.29 0.25 0.02 0.01 0.02 0.42 0.71 0.41 0.43
C4 0.02 0.01 0.06 0.26 0.00 0.11 0.01 0.18 0.01 0.01 0.00 0.00 0.02 0.23 0.17 0.04 0.78 0.78 1.35 0.84
C4' 0.01 0.09 0.01 0.01 0.11 0.00 0.18 0.01 0.18 0.07 0.09 0.12 0.17 0.20 0.03 0.01 0.02 0.34 0.27 0.10
C5 0.02 0.01 0.14 0.29 0.01 0.18 0.00 0.23 0.00 0.01 0.01 0.01 0.02 0.32 0.23 0.11 0.86 0.80 1.38 0.89
C5' 0.07 0.17 0.14 0.02 0.18 0.01 0.23 0.00 0.22 0.11 0.17 0.20 0.24 0.08 0.15 0.02 0.01 0.42 0.41 0.02
C6 0.02 0.01 0.19 0.26 0.01 0.18 0.00 0.22 0.00 0.01 0.01 0.01 0.02 0.31 0.21 0.15 0.76 0.66 1.09 0.73
N1 0.01 0.01 0.03 0.16 0.01 0.07 0.01 0.11 0.01 0.00 0.01 0.02 0.02 0.13 0.08 0.02 0.53 0.51 0.82 0.52
N3 0.02 0.01 0.14 0.24 0.00 0.09 0.01 0.17 0.01 0.01 0.00 0.01 0.01 0.20 0.16 0.12 0.65 0.68 1.15 0.70
N4 0.02 0.01 0.06 0.29 0.00 0.12 0.01 0.20 0.01 0.02 0.01 0.00 0.02 0.24 0.20 0.04 0.84 0.87 1.50 0.93
O2 0.05 0.01 0.33 0.25 0.02 0.17 0.02 0.24 0.02 0.02 0.01 0.02 0.00 0.35 0.31 0.27 0.40 0.53 0.75 0.46
O2' 0.02 0.19 0.01 0.02 0.23 0.20 0.32 0.08 0.31 0.13 0.20 0.24 0.35 0.00 0.06 0.14 0.18 0.46 0.38 0.29
O3' 0.20 0.17 0.03 0.01 0.17 0.03 0.23 0.15 0.21 0.08 0.16 0.20 0.31 0.06 0.00 0.14 0.37 0.86 0.52 0.44
O4' 0.01 0.16 0.01 0.02 0.04 0.01 0.11 0.02 0.15 0.02 0.12 0.04 0.27 0.14 0.14 0.00 0.21 0.27 0.34 0.25
O5' 0.27 0.52 0.39 0.42 0.78 0.02 0.86 0.01 0.76 0.53 0.65 0.84 0.40 0.18 0.37 0.21 0.00 0.02 0.02 0.01
OP1 0.35 0.57 0.62 0.71 0.78 0.34 0.80 0.42 0.66 0.51 0.68 0.87 0.53 0.46 0.86 0.27 0.02 0.00 0.02 0.01
OP2 0.46 0.91 0.50 0.41 1.35 0.27 1.38 0.41 1.09 0.82 1.15 1.50 0.75 0.38 0.52 0.34 0.02 0.02 0.00 0.01
P 0.29 0.56 0.45 0.43 0.84 0.10 0.89 0.02 0.73 0.52 0.70 0.93 0.46 0.29 0.44 0.25 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.93 1.32 0.88 1.19 1.81 1.42 1.82 1.73 1.50 1.15 1.62 2.07 1.39 0.92 1.56 1.26 1.79 2.36 2.11 2.15
C2 0.92 1.64 0.56 0.64 2.07 1.05 1.86 1.21 1.42 1.26 1.98 2.38 1.75 0.69 1.09 1.13 1.16 1.69 1.47 1.44
C2' 1.19 1.55 1.13 1.32 1.98 1.48 2.06 1.85 1.77 1.41 1.80 2.21 1.65 1.13 1.62 1.40 2.06 2.75 2.51 2.53
C3' 1.21 1.41 1.26 1.50 1.74 1.57 1.86 1.99 1.69 1.35 1.60 1.92 1.55 1.28 1.81 1.43 2.26 2.86 2.71 2.71
C4 1.02 1.72 0.55 0.46 2.01 0.99 1.73 1.09 1.40 1.35 2.02 2.23 1.78 0.72 0.85 1.26 0.98 1.27 1.28 1.13
C4' 1.03 1.15 1.16 1.60 1.61 1.67 1.74 2.09 1.54 1.14 1.40 1.83 1.21 1.17 1.94 1.38 2.27 2.84 2.67 2.66
C5 0.80 1.31 0.52 0.52 1.55 1.00 1.38 1.08 1.13 1.04 1.53 1.69 1.37 0.78 0.96 1.18 0.94 1.14 1.17 1.07
C5' 1.04 1.07 1.27 1.75 1.47 1.72 1.58 2.07 1.42 1.08 1.29 1.67 1.13 1.32 2.12 1.37 2.22 2.68 2.58 2.52
C6 0.79 1.20 0.71 0.87 1.54 1.15 1.46 1.26 1.20 1.00 1.44 1.69 1.26 0.86 1.29 1.14 1.20 1.49 1.38 1.37
N1 0.85 1.37 0.69 0.89 1.80 1.19 1.71 1.37 1.36 1.12 1.66 2.03 1.45 0.80 1.30 1.15 1.35 1.80 1.61 1.61
N3 1.03 1.83 0.55 0.49 2.22 0.98 1.90 1.10 1.48 1.40 2.19 2.52 1.92 0.68 0.91 1.19 1.00 1.46 1.33 1.23
N4 1.24 1.98 0.78 0.70 2.26 1.14 1.97 1.31 1.67 1.61 2.30 2.48 2.00 0.89 0.88 1.46 1.25 1.49 1.59 1.40
O2 0.95 1.72 0.59 0.69 2.20 1.09 1.97 1.30 1.50 1.31 2.10 2.57 1.85 0.69 1.13 1.13 1.28 1.93 1.64 1.63
O2' 1.32 1.67 1.22 1.43 2.14 1.61 2.21 2.04 1.90 1.54 1.94 2.41 1.76 1.18 1.69 1.54 2.26 3.06 2.83 2.82
O3' 1.36 1.52 1.40 1.67 1.82 1.75 1.98 2.27 1.83 1.47 1.68 2.00 1.68 1.39 1.92 1.59 2.61 3.30 3.23 3.21
O4' 0.95 1.19 1.01 1.43 1.67 1.62 1.70 1.96 1.45 1.11 1.47 1.91 1.22 1.03 1.79 1.35 1.99 2.48 2.25 2.29
O5' 1.19 1.37 1.42 1.87 1.79 1.67 1.86 1.96 1.67 1.35 1.61 1.99 1.33 1.27 2.23 1.40 2.16 2.48 2.49 2.36
OP1 1.67 1.87 1.99 2.39 2.16 2.04 2.19 2.27 2.03 1.80 2.05 2.34 1.90 1.83 2.51 1.70 2.50 2.73 2.83 2.64
OP2 1.54 1.74 1.69 1.88 2.02 1.54 2.04 1.73 1.88 1.68 1.90 2.17 1.74 1.72 2.13 1.51 1.88 2.17 2.27 2.05
P 1.38 1.53 1.68 2.09 1.83 1.71 1.86 1.89 1.69 1.47 1.71 2.01 1.57 1.62 2.45 1.42 2.02 2.29 2.32 2.16

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.09 0.02 0.01 0.03 0.03 0.05 0.03 0.32 0.01 0.26 0.43 0.49 0.30
C2 0.03 0.00 0.15 0.24 0.01 0.10 0.01 0.21 0.01 0.01 0.01 0.02 0.01 0.22 0.25 0.11 0.40 0.67 0.77 0.48
C2' 0.01 0.15 0.00 0.01 0.06 0.02 0.14 0.22 0.17 0.03 0.12 0.07 0.28 0.00 0.05 0.02 0.43 0.48 0.61 0.46
C3' 0.02 0.24 0.01 0.00 0.34 0.01 0.36 0.03 0.32 0.21 0.29 0.36 0.24 0.02 0.01 0.03 0.32 0.32 0.35 0.27
C4 0.02 0.01 0.06 0.34 0.00 0.14 0.01 0.27 0.01 0.02 0.01 0.01 0.02 0.36 0.19 0.04 0.60 0.97 1.09 0.73
C4' 0.01 0.10 0.02 0.01 0.14 0.00 0.20 0.01 0.19 0.08 0.11 0.16 0.17 0.31 0.03 0.01 0.02 0.22 0.26 0.07
C5 0.02 0.01 0.14 0.36 0.01 0.20 0.00 0.32 0.01 0.01 0.01 0.01 0.02 0.39 0.24 0.09 0.68 1.03 1.15 0.81
C5' 0.09 0.21 0.22 0.03 0.27 0.01 0.32 0.00 0.29 0.16 0.24 0.30 0.27 0.11 0.24 0.02 0.01 0.24 0.35 0.02
C6 0.02 0.01 0.17 0.32 0.01 0.19 0.01 0.29 0.00 0.01 0.02 0.02 0.02 0.33 0.20 0.12 0.62 0.86 0.95 0.69
N1 0.01 0.01 0.03 0.21 0.02 0.08 0.01 0.16 0.01 0.00 0.01 0.02 0.02 0.20 0.15 0.02 0.42 0.64 0.73 0.48
N3 0.03 0.01 0.12 0.29 0.01 0.11 0.01 0.24 0.02 0.01 0.00 0.01 0.02 0.29 0.20 0.08 0.49 0.82 0.93 0.60
N4 0.03 0.02 0.07 0.36 0.01 0.16 0.01 0.30 0.02 0.02 0.01 0.00 0.03 0.39 0.22 0.05 0.64 1.07 1.20 0.81
O2 0.05 0.01 0.28 0.24 0.02 0.17 0.02 0.27 0.02 0.02 0.02 0.03 0.00 0.24 0.43 0.18 0.34 0.58 0.68 0.41
O2' 0.03 0.22 0.00 0.02 0.36 0.31 0.39 0.11 0.33 0.20 0.29 0.39 0.24 0.00 0.07 0.21 0.35 0.41 0.63 0.39
O3' 0.32 0.25 0.05 0.01 0.19 0.03 0.24 0.24 0.20 0.15 0.20 0.22 0.43 0.07 0.00 0.22 0.43 0.69 0.51 0.49
O4' 0.01 0.11 0.02 0.03 0.04 0.01 0.09 0.02 0.12 0.02 0.08 0.05 0.18 0.21 0.22 0.00 0.19 0.39 0.38 0.24
O5' 0.26 0.40 0.43 0.32 0.60 0.02 0.68 0.01 0.62 0.42 0.49 0.64 0.34 0.35 0.43 0.19 0.00 0.02 0.02 0.01
OP1 0.43 0.67 0.48 0.32 0.97 0.22 1.03 0.24 0.86 0.64 0.82 1.07 0.58 0.41 0.69 0.39 0.02 0.00 0.01 0.01
OP2 0.49 0.77 0.61 0.35 1.09 0.26 1.15 0.35 0.95 0.73 0.93 1.20 0.68 0.63 0.51 0.38 0.02 0.01 0.00 0.01
P 0.30 0.48 0.46 0.27 0.73 0.07 0.81 0.02 0.69 0.48 0.60 0.81 0.41 0.39 0.49 0.24 0.01 0.01 0.01 0.00