ClaRNA

Doublet Group distance statistics: 33656

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Distances from reference structure (by RMSD)

37, 20, 20, 55, 9, 8, 14, 10, 2, 6, 0, 9, 59, 4, 1, 4, 6, 9, 18, 90,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 A 0, 0.139, 0.667, 1.196, 1.970 max_d=1.970 avg_d=0.667 std_dev=0.528
C4 B 0, 0.078, 0.611, 1.145, 1.820 max_d=1.820 avg_d=0.611 std_dev=0.533
N1 A 0, 0.045, 0.626, 1.206, 2.446 max_d=2.446 avg_d=0.626 std_dev=0.581
C1' B 0, 0.215, 0.850, 1.486, 2.765 max_d=2.765 avg_d=0.850 std_dev=0.636
N9 B 0, 0.242, 0.899, 1.557, 2.069 max_d=2.069 avg_d=0.899 std_dev=0.657
C2 A 0, 0.157, 0.870, 1.584, 2.705 max_d=2.705 avg_d=0.870 std_dev=0.713
C5 A 0, 0.133, 0.870, 1.608, 2.858 max_d=2.858 avg_d=0.870 std_dev=0.738
C1' A 0, 0.031, 0.907, 1.782, 4.640 max_d=4.640 avg_d=0.907 std_dev=0.875
O2 A 0, 0.243, 1.122, 2.001, 3.923 max_d=3.923 avg_d=1.122 std_dev=0.879
N1 B 0, 0.295, 1.208, 2.121, 4.529 max_d=4.529 avg_d=1.208 std_dev=0.913
N3 A 0, 0.229, 1.154, 2.078, 3.724 max_d=3.724 avg_d=1.154 std_dev=0.925
N3 B 0, 0.277, 1.216, 2.156, 2.925 max_d=2.925 avg_d=1.216 std_dev=0.940
C4 A 0, 0.175, 1.144, 2.112, 4.192 max_d=4.192 avg_d=1.144 std_dev=0.968
O4' B 0, 0.138, 1.127, 2.116, 4.659 max_d=4.659 avg_d=1.127 std_dev=0.989
C2' B 0, 0.167, 1.185, 2.203, 3.832 max_d=3.832 avg_d=1.185 std_dev=1.018
C5 B 0, 0.144, 1.170, 2.196, 3.843 max_d=3.843 avg_d=1.170 std_dev=1.026
C3' B 0, 0.280, 1.320, 2.360, 5.634 max_d=5.634 avg_d=1.320 std_dev=1.040
C6 B 0, 0.084, 1.148, 2.211, 4.424 max_d=4.424 avg_d=1.148 std_dev=1.063
C4' B 0, 0.156, 1.259, 2.362, 5.584 max_d=5.584 avg_d=1.259 std_dev=1.103
O4' A 0, 0.045, 1.176, 2.307, 6.050 max_d=6.050 avg_d=1.176 std_dev=1.131
C2 B 0, 0.338, 1.489, 2.639, 4.050 max_d=4.050 avg_d=1.489 std_dev=1.150
C2' A 0, 0.283, 1.470, 2.657, 5.907 max_d=5.907 avg_d=1.470 std_dev=1.187
O3' B 0, 0.176, 1.538, 2.899, 5.907 max_d=5.907 avg_d=1.538 std_dev=1.361
N4 A 0, 0.222, 1.611, 3.000, 6.409 max_d=6.409 avg_d=1.611 std_dev=1.389
O2' A 0, 0.311, 1.753, 3.194, 7.792 max_d=7.792 avg_d=1.753 std_dev=1.441
C5' B 0, 0.221, 1.704, 3.187, 8.312 max_d=8.312 avg_d=1.704 std_dev=1.483
C4' A 0, 0.198, 1.688, 3.178, 7.532 max_d=7.532 avg_d=1.688 std_dev=1.490
C8 B 0, 0.256, 1.785, 3.314, 4.648 max_d=4.648 avg_d=1.785 std_dev=1.529
C3' A 0, 0.468, 2.005, 3.541, 7.325 max_d=7.325 avg_d=2.005 std_dev=1.536
O5' A 0, 0.793, 2.399, 4.004, 8.863 max_d=8.863 avg_d=2.399 std_dev=1.605
N6 B 0, 0.147, 1.790, 3.433, 6.525 max_d=6.525 avg_d=1.790 std_dev=1.643
O2' B 0, 0.144, 1.804, 3.464, 5.163 max_d=5.163 avg_d=1.804 std_dev=1.660
C5' A 0, 0.582, 2.258, 3.935, 8.942 max_d=8.942 avg_d=2.258 std_dev=1.676
O5' B 0, 1.533, 3.245, 4.957, 9.794 max_d=9.794 avg_d=3.245 std_dev=1.712
N7 B 0, 0.223, 2.003, 3.784, 5.602 max_d=5.602 avg_d=2.003 std_dev=1.780
O3' A 0, 0.715, 2.786, 4.857, 9.804 max_d=9.804 avg_d=2.786 std_dev=2.071
P B 0, 2.324, 4.543, 6.761, 12.144 max_d=12.144 avg_d=4.543 std_dev=2.219
P A 0, 0.354, 2.762, 5.170, 10.966 max_d=10.966 avg_d=2.762 std_dev=2.408
OP1 B 0, 2.062, 4.507, 6.952, 12.572 max_d=12.572 avg_d=4.507 std_dev=2.445
OP1 A 0, 0.708, 3.389, 6.070, 12.631 max_d=12.631 avg_d=3.389 std_dev=2.681
OP2 B 0, 3.430, 6.211, 8.991, 12.517 max_d=12.517 avg_d=6.211 std_dev=2.780
OP2 A 0, 0.540, 3.382, 6.223, 12.711 max_d=12.711 avg_d=3.382 std_dev=2.842

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.10 0.02 0.01 0.02 0.02 0.05 0.02 0.25 0.01 0.38 0.41 0.53 0.30
C2 0.03 0.00 0.15 0.20 0.01 0.09 0.01 0.26 0.01 0.01 0.01 0.02 0.01 0.31 0.18 0.08 0.56 0.54 0.77 0.52
C2' 0.01 0.15 0.00 0.00 0.06 0.02 0.12 0.19 0.14 0.03 0.12 0.07 0.26 0.00 0.03 0.02 0.47 0.51 0.87 0.57
C3' 0.02 0.20 0.00 0.00 0.33 0.01 0.40 0.02 0.38 0.21 0.25 0.35 0.25 0.02 0.01 0.02 0.24 0.28 0.62 0.31
C4 0.02 0.01 0.06 0.33 0.00 0.17 0.01 0.37 0.01 0.01 0.01 0.00 0.02 0.26 0.22 0.03 0.58 0.64 0.77 0.51
C4' 0.01 0.09 0.02 0.01 0.17 0.00 0.22 0.01 0.22 0.10 0.12 0.18 0.13 0.25 0.03 0.00 0.02 0.23 0.36 0.09
C5 0.02 0.01 0.12 0.40 0.01 0.22 0.00 0.43 0.00 0.01 0.01 0.01 0.02 0.19 0.31 0.07 0.57 0.70 0.80 0.53
C5' 0.10 0.26 0.19 0.02 0.37 0.01 0.43 0.00 0.39 0.24 0.31 0.40 0.27 0.08 0.19 0.03 0.01 0.27 0.32 0.03
C6 0.02 0.01 0.14 0.38 0.01 0.22 0.00 0.39 0.00 0.01 0.01 0.01 0.02 0.16 0.27 0.09 0.53 0.60 0.66 0.44
N1 0.01 0.01 0.03 0.21 0.01 0.10 0.01 0.24 0.01 0.00 0.01 0.02 0.02 0.15 0.10 0.02 0.48 0.48 0.58 0.36
N3 0.02 0.01 0.12 0.25 0.01 0.12 0.01 0.31 0.01 0.01 0.00 0.01 0.01 0.33 0.17 0.06 0.59 0.60 0.80 0.55
N4 0.02 0.02 0.07 0.35 0.00 0.18 0.01 0.40 0.01 0.02 0.01 0.00 0.02 0.29 0.27 0.04 0.59 0.71 0.85 0.56
O2 0.05 0.01 0.26 0.25 0.02 0.13 0.02 0.27 0.02 0.02 0.01 0.02 0.00 0.44 0.35 0.14 0.59 0.59 0.93 0.64
O2' 0.02 0.31 0.00 0.02 0.26 0.25 0.19 0.08 0.16 0.15 0.33 0.29 0.44 0.00 0.06 0.19 0.32 0.42 0.95 0.54
O3' 0.25 0.18 0.03 0.01 0.22 0.03 0.31 0.19 0.27 0.10 0.17 0.27 0.35 0.06 0.00 0.23 0.40 0.44 0.82 0.49
O4' 0.01 0.08 0.02 0.02 0.03 0.00 0.07 0.03 0.09 0.02 0.06 0.04 0.14 0.19 0.23 0.00 0.31 0.46 0.42 0.29
O5' 0.38 0.56 0.47 0.24 0.58 0.02 0.57 0.01 0.53 0.48 0.59 0.59 0.59 0.32 0.40 0.31 0.00 0.02 0.03 0.01
OP1 0.41 0.54 0.51 0.28 0.64 0.23 0.70 0.27 0.60 0.48 0.60 0.71 0.59 0.42 0.44 0.46 0.02 0.00 0.02 0.01
OP2 0.53 0.77 0.87 0.62 0.77 0.36 0.80 0.32 0.66 0.58 0.80 0.85 0.93 0.95 0.82 0.42 0.03 0.02 0.00 0.01
P 0.30 0.52 0.57 0.31 0.51 0.09 0.53 0.03 0.44 0.36 0.55 0.56 0.64 0.54 0.49 0.29 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 1.03 1.90 0.69 0.93 1.50 1.14 1.73 1.26 1.92 1.62 1.98 1.64 2.08 1.83 1.30 0.67 1.29 1.24 1.46 2.08 1.81 1.81
C2 0.95 2.13 0.49 0.57 1.63 0.78 1.91 0.78 2.16 1.67 2.21 1.84 2.37 1.97 1.33 0.72 0.97 1.11 1.04 1.59 1.35 1.34
C2' 1.33 2.08 0.98 1.17 1.72 1.30 1.96 1.45 2.11 1.96 2.16 1.83 2.28 2.13 1.59 0.77 1.49 1.45 1.70 2.33 2.09 2.10
C3' 1.67 2.18 1.38 1.62 1.87 1.69 2.00 1.80 2.12 2.02 2.21 1.98 2.22 2.10 1.79 1.14 1.93 1.77 2.00 2.43 2.26 2.30
C4 0.93 2.11 0.41 0.43 1.61 0.72 1.79 0.70 2.02 1.51 2.12 1.88 2.13 1.76 1.28 0.88 0.79 1.17 0.93 1.22 1.21 1.09
C4' 1.30 1.78 1.04 1.47 1.44 1.63 1.56 1.79 1.70 1.55 1.80 1.58 1.79 1.63 1.36 0.79 1.80 1.56 1.93 2.39 2.24 2.21
C5 0.98 1.76 0.40 0.52 1.45 0.89 1.55 0.84 1.69 1.34 1.76 1.63 1.74 1.51 1.21 0.82 0.86 1.30 0.96 1.25 1.08 1.07
C5' 1.51 1.72 1.27 1.79 1.45 1.97 1.47 2.06 1.56 1.49 1.70 1.58 1.60 1.49 1.42 1.00 2.08 1.82 2.11 2.45 2.28 2.27
C6 1.01 1.69 0.55 0.76 1.40 1.07 1.54 1.05 1.66 1.40 1.71 1.54 1.74 1.55 1.22 0.73 1.09 1.30 1.17 1.58 1.27 1.34
N1 0.99 1.91 0.57 0.75 1.52 0.98 1.74 1.01 1.92 1.57 1.97 1.68 2.07 1.80 1.29 0.69 1.12 1.21 1.20 1.73 1.44 1.47
N3 0.92 2.23 0.43 0.45 1.66 0.68 1.93 0.67 2.21 1.64 2.28 1.92 2.40 1.95 1.32 0.81 0.84 1.10 0.96 1.38 1.28 1.20
N4 0.94 2.34 0.51 0.55 1.70 0.79 1.85 0.84 2.13 1.53 2.31 2.06 2.23 1.79 1.31 1.01 0.81 1.20 1.08 1.22 1.45 1.22
O2 0.94 2.23 0.52 0.60 1.67 0.76 2.01 0.80 2.30 1.75 2.35 1.88 2.57 2.10 1.36 0.70 1.00 1.07 1.10 1.73 1.49 1.45
O2' 1.26 2.09 0.96 1.16 1.71 1.29 2.00 1.51 2.17 1.97 2.20 1.80 2.39 2.18 1.57 0.76 1.46 1.41 1.78 2.50 2.35 2.28
O3' 1.69 2.11 1.50 1.78 1.83 1.81 1.99 2.06 2.10 2.08 2.18 1.90 2.23 2.14 1.80 1.26 2.08 1.80 2.25 2.72 2.65 2.66
O4' 1.01 1.69 0.72 1.11 1.31 1.36 1.47 1.50 1.64 1.38 1.73 1.47 1.76 1.53 1.15 0.66 1.45 1.32 1.65 2.22 1.97 1.95
O5' 1.77 1.88 1.53 1.99 1.71 2.11 1.71 2.11 1.78 1.71 1.87 1.79 1.79 1.71 1.69 1.26 2.24 2.02 2.14 2.41 2.12 2.23
OP1 2.25 2.22 2.13 2.68 2.03 2.82 1.94 2.93 1.99 1.99 2.14 2.17 1.94 1.90 2.06 1.86 2.57 2.56 2.93 3.24 2.80 2.99
OP2 2.36 2.66 2.28 2.42 2.43 2.26 2.39 2.18 2.48 2.22 2.62 2.58 2.46 2.25 2.32 2.23 2.45 2.30 2.18 2.29 2.08 2.16
P 2.24 2.22 2.08 2.54 2.08 2.53 2.01 2.47 2.05 2.00 2.17 2.19 2.02 1.95 2.08 1.86 2.69 2.41 2.45 2.64 2.29 2.45

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.01 0.02 0.10 0.02 0.02 0.04 0.04 0.03 0.02 0.01 0.02 0.32 0.01 0.46 0.52 0.78 0.51
C2 0.04 0.00 0.43 0.45 0.01 0.48 0.01 0.93 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.39 0.45 0.35 1.05 1.05 1.74 1.15
C2' 0.01 0.43 0.00 0.01 0.22 0.02 0.10 0.23 0.19 0.23 0.33 0.43 0.13 0.13 0.03 0.00 0.04 0.02 0.59 0.71 0.76 0.62
C3' 0.02 0.45 0.01 0.00 0.26 0.01 0.29 0.02 0.31 0.44 0.37 0.43 0.34 0.41 0.21 0.02 0.01 0.02 0.37 0.45 0.42 0.33
C4 0.02 0.01 0.22 0.26 0.00 0.20 0.01 0.40 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.27 0.25 0.19 0.73 0.71 1.34 0.81
C4' 0.01 0.48 0.02 0.01 0.20 0.00 0.12 0.01 0.19 0.33 0.35 0.47 0.15 0.25 0.08 0.30 0.03 0.01 0.02 0.30 0.31 0.10
C5 0.02 0.01 0.10 0.29 0.01 0.12 0.00 0.24 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.33 0.16 0.09 0.83 0.93 1.64 1.04
C5' 0.10 0.93 0.23 0.02 0.40 0.01 0.24 0.00 0.39 0.56 0.71 0.87 0.31 0.44 0.17 0.09 0.23 0.02 0.01 0.24 0.34 0.02
C6 0.02 0.01 0.19 0.31 0.01 0.19 0.01 0.39 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.35 0.22 0.16 0.85 0.89 1.71 1.04
C8 0.02 0.01 0.23 0.44 0.01 0.33 0.01 0.56 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.35 0.21 0.20 1.10 1.35 1.85 1.41
N1 0.04 0.00 0.33 0.37 0.01 0.35 0.01 0.71 0.00 0.01 0.00 0.01 0.01 0.01 0.02 0.37 0.34 0.28 0.95 0.92 1.74 1.07
N3 0.04 0.01 0.43 0.43 0.01 0.47 0.01 0.87 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.35 0.46 0.35 0.95 0.92 1.49 0.99
N6 0.03 0.01 0.13 0.34 0.01 0.15 0.01 0.31 0.00 0.02 0.01 0.01 0.00 0.02 0.02 0.38 0.21 0.12 0.89 1.04 1.88 1.17
N7 0.02 0.01 0.13 0.41 0.01 0.25 0.00 0.44 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.38 0.21 0.11 1.06 1.37 2.00 1.43
N9 0.01 0.02 0.03 0.21 0.01 0.08 0.01 0.17 0.01 0.01 0.02 0.01 0.02 0.01 0.00 0.20 0.14 0.02 0.71 0.78 1.24 0.84
O2' 0.02 0.39 0.00 0.02 0.27 0.30 0.33 0.09 0.35 0.35 0.37 0.35 0.38 0.38 0.20 0.00 0.08 0.21 0.50 0.65 0.83 0.60
O3' 0.32 0.45 0.04 0.01 0.25 0.03 0.16 0.23 0.22 0.21 0.34 0.46 0.21 0.21 0.14 0.08 0.00 0.24 0.38 0.51 0.57 0.40
O4' 0.01 0.35 0.02 0.02 0.19 0.01 0.09 0.02 0.16 0.20 0.28 0.35 0.12 0.11 0.02 0.21 0.24 0.00 0.33 0.40 0.60 0.36
O5' 0.46 1.05 0.59 0.37 0.73 0.02 0.83 0.01 0.85 1.10 0.95 0.95 0.89 1.06 0.71 0.50 0.38 0.33 0.00 0.02 0.02 0.01
OP1 0.52 1.05 0.71 0.45 0.71 0.30 0.93 0.24 0.89 1.35 0.92 0.92 1.04 1.37 0.78 0.65 0.51 0.40 0.02 0.00 0.01 0.01
OP2 0.78 1.74 0.76 0.42 1.34 0.31 1.64 0.34 1.71 1.85 1.74 1.49 1.88 2.00 1.24 0.83 0.57 0.60 0.02 0.01 0.00 0.01
P 0.51 1.15 0.62 0.33 0.81 0.10 1.04 0.02 1.04 1.41 1.07 0.99 1.17 1.43 0.84 0.60 0.40 0.36 0.01 0.01 0.01 0.00