ClaRNA

Doublet Group distance statistics: 34594

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Distances from reference structure (by RMSD)

4, 8, 42, 24, 2, 1, 0, 5, 1, 0, 2, 44, 22, 5, 10, 3, 4, 8, 0, 1,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 A 0, 0.128, 0.406, 0.683, 0.931 max_d=0.931 avg_d=0.406 std_dev=0.277
N1 B 0, 0.150, 0.440, 0.731, 1.000 max_d=1.000 avg_d=0.440 std_dev=0.291
C2 B 0, 0.243, 0.619, 0.996, 1.531 max_d=1.531 avg_d=0.619 std_dev=0.377
C2 A 0, 0.156, 0.537, 0.918, 1.857 max_d=1.857 avg_d=0.537 std_dev=0.381
N3 B 0, 0.266, 0.710, 1.154, 1.957 max_d=1.957 avg_d=0.710 std_dev=0.444
C6 A 0, 0.220, 0.682, 1.144, 1.468 max_d=1.468 avg_d=0.682 std_dev=0.462
N3 A 0, 0.251, 0.721, 1.191, 2.554 max_d=2.554 avg_d=0.721 std_dev=0.470
C6 B 0, 0.248, 0.733, 1.217, 1.607 max_d=1.607 avg_d=0.733 std_dev=0.485
C4 A 0, 0.337, 0.901, 1.465, 2.594 max_d=2.594 avg_d=0.901 std_dev=0.564
C5 A 0, 0.305, 0.901, 1.498, 2.240 max_d=2.240 avg_d=0.901 std_dev=0.596
C4 B 0, 0.318, 0.923, 1.529, 2.531 max_d=2.531 avg_d=0.923 std_dev=0.606
C5 B 0, 0.334, 0.993, 1.651, 2.473 max_d=2.473 avg_d=0.993 std_dev=0.658
C1' A 0, 0.342, 1.007, 1.672, 2.240 max_d=2.240 avg_d=1.007 std_dev=0.665
C1' B 0, 0.328, 1.047, 1.767, 2.265 max_d=2.265 avg_d=1.047 std_dev=0.719
O2 A 0, 0.341, 1.082, 1.823, 3.186 max_d=3.186 avg_d=1.082 std_dev=0.741
O2 B 0, 0.456, 1.244, 2.032, 2.840 max_d=2.840 avg_d=1.244 std_dev=0.788
O4' A 0, 0.403, 1.214, 2.025, 2.956 max_d=2.956 avg_d=1.214 std_dev=0.811
O4' B 0, 0.344, 1.198, 2.053, 3.084 max_d=3.084 avg_d=1.198 std_dev=0.854
O4 A 0, 0.557, 1.425, 2.293, 3.937 max_d=3.937 avg_d=1.425 std_dev=0.868
O4 B 0, 0.517, 1.493, 2.470, 3.736 max_d=3.736 avg_d=1.493 std_dev=0.976
C2' B 0, 0.468, 1.642, 2.816, 3.968 max_d=3.968 avg_d=1.642 std_dev=1.174
C2' A 0, 0.440, 1.716, 2.992, 3.903 max_d=3.903 avg_d=1.716 std_dev=1.276
C4' B 0, 0.365, 1.697, 3.028, 4.409 max_d=4.409 avg_d=1.697 std_dev=1.331
C3' B 0, 0.481, 1.950, 3.418, 4.935 max_d=4.935 avg_d=1.950 std_dev=1.468
C4' A 0, 0.488, 2.016, 3.543, 4.513 max_d=4.513 avg_d=2.016 std_dev=1.527
O2' B 0, 0.344, 1.974, 3.605, 5.752 max_d=5.752 avg_d=1.974 std_dev=1.630
C5' B 0, 0.536, 2.179, 3.822, 6.058 max_d=6.058 avg_d=2.179 std_dev=1.643
O3' B 0, 0.534, 2.206, 3.878, 5.601 max_d=5.601 avg_d=2.206 std_dev=1.672
C3' A 0, 0.478, 2.168, 3.857, 5.186 max_d=5.186 avg_d=2.168 std_dev=1.690
O2' A 0, 0.567, 2.301, 4.035, 4.833 max_d=4.833 avg_d=2.301 std_dev=1.734
C5' A 0, 0.528, 2.474, 4.420, 6.245 max_d=6.245 avg_d=2.474 std_dev=1.946
O5' B 0, 0.516, 2.481, 4.445, 6.747 max_d=6.747 avg_d=2.481 std_dev=1.964
O5' A 0, 0.504, 2.549, 4.594, 6.835 max_d=6.835 avg_d=2.549 std_dev=2.045
O3' A 0, 0.606, 2.978, 5.351, 7.121 max_d=7.121 avg_d=2.978 std_dev=2.372
P A 0, 0.531, 2.952, 5.374, 9.508 max_d=9.508 avg_d=2.952 std_dev=2.422
OP2 A 0, 0.577, 3.153, 5.730, 11.244 max_d=11.244 avg_d=3.153 std_dev=2.577
P B 0, 0.601, 3.279, 5.956, 7.801 max_d=7.801 avg_d=3.279 std_dev=2.677
OP1 A 0, 0.446, 3.196, 5.945, 10.518 max_d=10.518 avg_d=3.196 std_dev=2.750
OP1 B 0, 0.661, 3.766, 6.871, 9.221 max_d=9.221 avg_d=3.766 std_dev=3.105
OP2 B 0, 0.690, 3.825, 6.961, 8.447 max_d=8.447 avg_d=3.825 std_dev=3.135

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.02 0.02 0.01 0.02 0.03 0.02 0.01 0.02 0.04 0.02 0.08 0.02 0.01 0.13 0.33 0.61 0.22
C2 0.02 0.00 0.13 0.11 0.01 0.06 0.01 0.12 0.01 0.01 0.01 0.01 0.16 0.13 0.02 0.08 0.30 0.66 0.58 0.34
C2' 0.00 0.13 0.00 0.01 0.06 0.02 0.14 0.06 0.16 0.03 0.08 0.26 0.01 0.02 0.06 0.01 0.19 0.32 0.41 0.20
C3' 0.02 0.11 0.01 0.00 0.17 0.00 0.26 0.02 0.26 0.10 0.11 0.22 0.02 0.01 0.18 0.01 0.26 0.29 0.29 0.20
C4 0.02 0.01 0.06 0.17 0.00 0.10 0.01 0.19 0.01 0.01 0.01 0.02 0.10 0.18 0.01 0.04 0.46 0.92 0.66 0.47
C4' 0.01 0.06 0.02 0.00 0.10 0.00 0.15 0.01 0.15 0.06 0.07 0.11 0.09 0.02 0.11 0.01 0.02 0.22 0.47 0.10
C5 0.02 0.01 0.14 0.26 0.01 0.15 0.00 0.25 0.00 0.01 0.01 0.02 0.15 0.29 0.01 0.09 0.53 0.91 0.71 0.52
C5' 0.03 0.12 0.06 0.02 0.19 0.01 0.25 0.00 0.23 0.10 0.15 0.17 0.06 0.07 0.21 0.01 0.01 0.38 0.38 0.02
C6 0.02 0.01 0.16 0.26 0.01 0.15 0.00 0.23 0.00 0.01 0.01 0.02 0.15 0.27 0.01 0.11 0.48 0.73 0.67 0.43
N1 0.01 0.01 0.03 0.10 0.01 0.06 0.01 0.10 0.01 0.00 0.01 0.02 0.06 0.09 0.02 0.02 0.29 0.57 0.60 0.31
N3 0.02 0.01 0.08 0.11 0.01 0.07 0.01 0.15 0.01 0.01 0.00 0.01 0.13 0.11 0.01 0.06 0.37 0.81 0.60 0.40
O2 0.04 0.01 0.26 0.22 0.02 0.11 0.02 0.17 0.02 0.02 0.01 0.00 0.29 0.28 0.02 0.15 0.29 0.62 0.61 0.38
O2' 0.02 0.16 0.01 0.02 0.10 0.09 0.15 0.06 0.15 0.06 0.13 0.29 0.00 0.05 0.11 0.07 0.10 0.23 0.44 0.12
O3' 0.08 0.13 0.02 0.01 0.18 0.02 0.29 0.07 0.27 0.09 0.11 0.28 0.05 0.00 0.20 0.06 0.23 0.42 0.23 0.20
O4 0.02 0.02 0.06 0.18 0.01 0.11 0.01 0.21 0.01 0.02 0.01 0.02 0.11 0.20 0.00 0.05 0.49 1.01 0.70 0.51
O4' 0.01 0.08 0.01 0.01 0.04 0.01 0.09 0.01 0.11 0.02 0.06 0.15 0.07 0.06 0.05 0.00 0.08 0.21 0.72 0.22
O5' 0.13 0.30 0.19 0.26 0.46 0.02 0.53 0.01 0.48 0.29 0.37 0.29 0.10 0.23 0.49 0.08 0.00 0.02 0.02 0.01
OP1 0.33 0.66 0.32 0.29 0.92 0.22 0.91 0.38 0.73 0.57 0.81 0.62 0.23 0.42 1.01 0.21 0.02 0.00 0.01 0.01
OP2 0.61 0.58 0.41 0.29 0.66 0.47 0.71 0.38 0.67 0.60 0.60 0.61 0.44 0.23 0.70 0.72 0.02 0.01 0.00 0.01
P 0.22 0.34 0.20 0.20 0.47 0.10 0.52 0.02 0.43 0.31 0.40 0.38 0.12 0.20 0.51 0.22 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 1.22 0.62 1.48 1.66 0.50 1.70 0.53 1.91 0.75 0.83 0.32 0.88 1.45 1.53 1.04 1.51 2.24 2.77 2.12 2.45
C2 0.64 0.32 0.58 0.70 0.50 0.88 0.47 0.99 0.47 0.45 0.35 0.43 0.61 0.58 0.79 0.92 1.28 2.09 1.16 1.50
C2' 1.60 0.78 1.89 2.19 0.54 2.30 0.73 2.63 1.12 1.12 0.37 1.09 1.70 2.00 1.24 2.00 2.98 3.59 3.04 3.31
C3' 1.88 0.94 2.39 2.69 0.55 2.63 0.64 2.94 1.13 1.26 0.43 1.33 2.26 2.53 1.31 2.15 3.34 3.50 3.29 3.53
C4 0.41 0.33 0.64 0.58 0.23 0.46 0.45 0.54 0.44 0.32 0.26 0.51 0.96 0.69 0.33 0.41 0.78 1.21 0.88 0.84
C4' 1.66 0.87 2.22 2.49 0.63 2.31 0.60 2.54 0.85 1.07 0.48 1.26 2.25 2.39 1.29 1.85 2.87 2.89 2.75 2.94
C5 0.61 0.63 0.95 0.73 0.27 0.42 0.49 0.37 0.37 0.44 0.44 0.91 1.44 0.95 0.44 0.35 0.71 1.24 0.81 0.85
C5' 1.72 0.98 2.44 2.70 0.82 2.29 0.76 2.36 0.76 1.07 0.67 1.42 2.62 2.69 1.42 1.73 2.60 2.25 2.29 2.40
C6 0.91 0.68 1.28 1.16 0.34 0.93 0.43 0.87 0.39 0.64 0.39 0.94 1.61 1.24 0.66 0.82 1.15 1.62 0.85 1.17
N1 0.87 0.50 1.08 1.13 0.41 1.13 0.41 1.24 0.50 0.61 0.25 0.69 1.18 1.06 0.82 1.06 1.54 2.15 1.33 1.68
N3 0.45 0.32 0.41 0.46 0.40 0.51 0.43 0.54 0.41 0.36 0.34 0.40 0.60 0.47 0.52 0.59 0.82 1.56 0.71 0.94
O2 0.83 0.44 0.66 0.87 0.66 1.14 0.63 1.28 0.63 0.56 0.57 0.59 0.56 0.70 1.02 1.16 1.55 2.48 1.55 1.86
O2' 1.73 0.80 1.95 2.37 0.59 2.60 0.85 3.02 1.24 1.19 0.44 1.10 1.69 2.18 1.24 2.25 3.33 4.11 3.64 3.81
O3' 2.20 1.06 2.71 3.20 0.51 3.23 0.79 3.71 1.40 1.49 0.44 1.47 2.48 3.03 1.30 2.61 4.11 4.28 4.40 4.54
O4 0.83 0.44 1.16 1.17 0.36 1.02 0.59 1.10 0.72 0.61 0.40 0.65 1.32 1.20 0.61 0.82 1.22 1.18 1.41 1.17
O4' 1.27 0.69 1.71 1.85 0.61 1.71 0.59 1.86 0.65 0.82 0.41 1.01 1.83 1.79 1.13 1.42 2.17 2.42 1.94 2.25
O5' 1.76 1.01 2.57 2.70 0.64 2.14 0.75 2.02 0.71 1.08 0.55 1.50 2.90 2.77 1.20 1.61 2.23 1.93 1.72 1.90
OP1 1.27 0.65 2.06 2.25 1.39 1.62 1.66 1.44 1.24 0.80 0.82 1.04 2.55 2.51 1.82 1.13 1.50 1.96 1.10 1.41
OP2 1.86 1.30 2.61 2.67 0.97 1.92 1.18 1.46 0.99 1.23 0.93 1.86 3.34 3.08 1.32 1.47 1.30 1.29 1.21 1.06
P 1.52 0.88 2.37 2.47 0.86 1.74 1.09 1.44 0.76 0.86 0.58 1.43 2.94 2.73 1.34 1.21 1.49 1.51 1.06 1.20

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.07 0.02 0.01 0.03 0.05 0.02 0.28 0.03 0.01 0.26 0.75 0.28 0.28
C2 0.03 0.00 0.15 0.32 0.02 0.29 0.02 0.43 0.01 0.01 0.01 0.01 0.37 0.20 0.02 0.22 0.53 0.93 0.85 0.53
C2' 0.01 0.15 0.00 0.01 0.06 0.01 0.13 0.17 0.16 0.03 0.11 0.27 0.01 0.04 0.07 0.02 0.51 0.74 0.43 0.51
C3' 0.02 0.32 0.01 0.00 0.25 0.01 0.22 0.02 0.20 0.14 0.32 0.47 0.02 0.01 0.28 0.02 0.25 0.36 0.31 0.21
C4 0.02 0.02 0.06 0.25 0.00 0.10 0.01 0.20 0.01 0.02 0.01 0.02 0.28 0.10 0.00 0.05 0.42 1.34 0.65 0.51
C4' 0.01 0.29 0.01 0.01 0.10 0.00 0.18 0.01 0.23 0.05 0.24 0.52 0.21 0.03 0.12 0.01 0.02 0.22 0.24 0.08
C5 0.02 0.02 0.13 0.22 0.01 0.18 0.00 0.38 0.01 0.01 0.01 0.02 0.26 0.15 0.01 0.19 0.62 1.66 0.61 0.81
C5' 0.07 0.43 0.17 0.02 0.20 0.01 0.38 0.00 0.43 0.12 0.37 0.79 0.08 0.17 0.22 0.02 0.01 0.24 0.28 0.02
C6 0.02 0.01 0.16 0.20 0.01 0.23 0.01 0.43 0.00 0.01 0.01 0.02 0.24 0.18 0.02 0.24 0.67 1.56 0.56 0.81
N1 0.01 0.01 0.03 0.14 0.02 0.05 0.01 0.12 0.01 0.00 0.01 0.02 0.16 0.14 0.02 0.02 0.33 1.04 0.38 0.37
N3 0.03 0.01 0.11 0.32 0.01 0.24 0.01 0.37 0.01 0.01 0.00 0.02 0.36 0.16 0.02 0.15 0.50 1.08 0.90 0.54
O2 0.05 0.01 0.27 0.47 0.02 0.52 0.02 0.79 0.02 0.02 0.02 0.00 0.55 0.35 0.03 0.41 0.92 1.00 1.27 0.96
O2' 0.02 0.37 0.01 0.02 0.28 0.21 0.26 0.08 0.24 0.16 0.36 0.55 0.00 0.06 0.30 0.13 0.39 0.64 0.55 0.44
O3' 0.28 0.20 0.04 0.01 0.10 0.03 0.15 0.17 0.18 0.14 0.16 0.35 0.06 0.00 0.12 0.19 0.16 0.37 0.42 0.23
O4 0.03 0.02 0.07 0.28 0.00 0.12 0.01 0.22 0.02 0.02 0.02 0.03 0.30 0.12 0.00 0.06 0.44 1.37 0.75 0.54
O4' 0.01 0.22 0.02 0.02 0.05 0.01 0.19 0.02 0.24 0.02 0.15 0.41 0.13 0.19 0.06 0.00 0.15 0.58 0.33 0.21
O5' 0.26 0.53 0.51 0.25 0.42 0.02 0.62 0.01 0.67 0.33 0.50 0.92 0.39 0.16 0.44 0.15 0.00 0.02 0.02 0.01
OP1 0.75 0.93 0.74 0.36 1.34 0.22 1.66 0.24 1.56 1.04 1.08 1.00 0.64 0.37 1.37 0.58 0.02 0.00 0.01 0.01
OP2 0.28 0.85 0.43 0.31 0.65 0.24 0.61 0.28 0.56 0.38 0.90 1.27 0.55 0.42 0.75 0.33 0.02 0.01 0.00 0.01
P 0.28 0.53 0.51 0.21 0.51 0.08 0.81 0.02 0.81 0.37 0.54 0.96 0.44 0.23 0.54 0.21 0.01 0.01 0.01 0.00