ClaRNA

Doublet Group distance statistics: 34678

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Distances from reference structure (by RMSD)

33, 11, 0, 0, 10, 3, 0, 0, 0, 0, 1, 1, 8, 2, 1, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C2 B 0, 0.007, 0.199, 0.391, 0.782 max_d=0.782 avg_d=0.199 std_dev=0.192
C4 A 0, -0.015, 0.253, 0.521, 0.887 max_d=0.887 avg_d=0.253 std_dev=0.268
N1 A 0, -0.073, 0.205, 0.482, 0.896 max_d=0.896 avg_d=0.205 std_dev=0.277
N3 A 0, -0.017, 0.280, 0.577, 1.043 max_d=1.043 avg_d=0.280 std_dev=0.297
N1 B 0, -0.120, 0.218, 0.556, 1.114 max_d=1.114 avg_d=0.218 std_dev=0.338
N4 A 0, -0.007, 0.371, 0.750, 1.217 max_d=1.217 avg_d=0.371 std_dev=0.379
C1' A 0, -0.056, 0.323, 0.702, 1.220 max_d=1.220 avg_d=0.323 std_dev=0.379
C6 A 0, -0.055, 0.334, 0.722, 1.334 max_d=1.334 avg_d=0.334 std_dev=0.388
C2 A 0, -0.043, 0.361, 0.764, 1.291 max_d=1.291 avg_d=0.361 std_dev=0.403
C2' A 0, -0.018, 0.425, 0.869, 1.494 max_d=1.494 avg_d=0.425 std_dev=0.444
N3 B 0, -0.077, 0.370, 0.817, 1.439 max_d=1.439 avg_d=0.370 std_dev=0.447
C5 A 0, -0.053, 0.426, 0.905, 1.478 max_d=1.478 avg_d=0.426 std_dev=0.479
O2 B 0, -0.061, 0.421, 0.903, 1.845 max_d=1.845 avg_d=0.421 std_dev=0.482
C4 B 0, -0.141, 0.423, 0.987, 1.732 max_d=1.732 avg_d=0.423 std_dev=0.564
C6 B 0, -0.239, 0.394, 1.026, 1.944 max_d=1.944 avg_d=0.394 std_dev=0.632
C5 B 0, -0.214, 0.451, 1.115, 2.067 max_d=2.067 avg_d=0.451 std_dev=0.665
C1' B 0, -0.222, 0.448, 1.118, 2.101 max_d=2.101 avg_d=0.448 std_dev=0.670
O2' A 0, -0.111, 0.566, 1.244, 2.788 max_d=2.788 avg_d=0.566 std_dev=0.677
O4' A 0, -0.103, 0.597, 1.298, 2.286 max_d=2.286 avg_d=0.597 std_dev=0.700
O2 A 0, -0.075, 0.650, 1.375, 2.225 max_d=2.225 avg_d=0.650 std_dev=0.725
C4' A 0, -0.061, 0.712, 1.485, 2.047 max_d=2.047 avg_d=0.712 std_dev=0.773
C3' A 0, -0.139, 0.645, 1.429, 2.429 max_d=2.429 avg_d=0.645 std_dev=0.784
N4 B 0, -0.235, 0.672, 1.580, 2.760 max_d=2.760 avg_d=0.672 std_dev=0.907
C5' A 0, -0.114, 0.883, 1.879, 3.530 max_d=3.530 avg_d=0.883 std_dev=0.997
O4' B 0, -0.355, 0.699, 1.754, 3.197 max_d=3.197 avg_d=0.699 std_dev=1.055
C2' B 0, -0.389, 0.778, 1.945, 3.547 max_d=3.547 avg_d=0.778 std_dev=1.167
O5' A 0, -0.288, 0.973, 2.233, 5.037 max_d=5.037 avg_d=0.973 std_dev=1.261
O3' A 0, -0.278, 1.052, 2.381, 3.846 max_d=3.846 avg_d=1.052 std_dev=1.329
O2' B 0, -0.426, 0.922, 2.270, 3.983 max_d=3.983 avg_d=0.922 std_dev=1.348
C3' B 0, -0.504, 0.992, 2.488, 4.521 max_d=4.521 avg_d=0.992 std_dev=1.496
OP2 A 0, -0.433, 1.063, 2.560, 5.674 max_d=5.674 avg_d=1.063 std_dev=1.496
C4' B 0, -0.530, 1.015, 2.560, 4.612 max_d=4.612 avg_d=1.015 std_dev=1.545
P A 0, -0.282, 1.354, 2.990, 5.872 max_d=5.872 avg_d=1.354 std_dev=1.636
O5' B 0, -0.531, 1.141, 2.814, 5.581 max_d=5.581 avg_d=1.141 std_dev=1.672
OP2 B 0, -0.243, 1.484, 3.212, 5.410 max_d=5.410 avg_d=1.484 std_dev=1.727
P B 0, -0.407, 1.470, 3.347, 5.600 max_d=5.600 avg_d=1.470 std_dev=1.877
C5' B 0, -0.649, 1.278, 3.206, 5.923 max_d=5.923 avg_d=1.278 std_dev=1.928
O3' B 0, -0.631, 1.313, 3.258, 6.133 max_d=6.133 avg_d=1.313 std_dev=1.945
OP1 A 0, -0.217, 1.921, 4.059, 5.667 max_d=5.667 avg_d=1.921 std_dev=2.138
OP1 B 0, -0.453, 2.180, 4.814, 7.648 max_d=7.648 avg_d=2.180 std_dev=2.634

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.02 0.02 0.01 0.02 0.06 0.01 0.01 0.02 0.03 0.04 0.02 0.30 0.00 0.34 0.91 0.55 0.39
C2 0.02 0.00 0.21 0.25 0.01 0.07 0.01 0.16 0.01 0.01 0.00 0.01 0.00 0.17 0.22 0.11 0.49 1.28 0.86 0.58
C2' 0.00 0.21 0.00 0.00 0.06 0.01 0.13 0.17 0.18 0.03 0.17 0.07 0.38 0.00 0.04 0.02 0.66 0.96 0.52 0.65
C3' 0.02 0.25 0.00 0.00 0.32 0.01 0.29 0.02 0.23 0.19 0.30 0.35 0.23 0.02 0.01 0.02 0.35 0.43 0.22 0.25
C4 0.02 0.01 0.06 0.32 0.00 0.15 0.00 0.25 0.01 0.02 0.00 0.01 0.01 0.31 0.14 0.03 0.54 1.54 1.09 0.69
C4' 0.01 0.07 0.01 0.01 0.15 0.00 0.19 0.01 0.17 0.09 0.10 0.17 0.07 0.25 0.02 0.01 0.01 0.26 0.28 0.11
C5 0.02 0.01 0.13 0.29 0.00 0.19 0.00 0.27 0.00 0.01 0.01 0.01 0.01 0.38 0.13 0.11 0.51 1.56 1.06 0.66
C5' 0.06 0.16 0.17 0.02 0.25 0.01 0.27 0.00 0.22 0.14 0.21 0.29 0.15 0.09 0.20 0.02 0.01 0.21 0.29 0.01
C6 0.01 0.01 0.18 0.23 0.01 0.17 0.00 0.22 0.00 0.00 0.01 0.01 0.01 0.35 0.08 0.15 0.48 1.42 0.90 0.59
N1 0.01 0.01 0.03 0.19 0.02 0.09 0.01 0.14 0.00 0.00 0.01 0.02 0.01 0.18 0.15 0.02 0.45 1.23 0.78 0.53
N3 0.02 0.00 0.17 0.30 0.00 0.10 0.01 0.21 0.01 0.01 0.00 0.01 0.01 0.22 0.19 0.08 0.54 1.43 1.00 0.66
N4 0.03 0.01 0.07 0.35 0.01 0.17 0.01 0.29 0.01 0.02 0.01 0.00 0.01 0.33 0.17 0.04 0.56 1.59 1.16 0.73
O2 0.04 0.00 0.38 0.23 0.01 0.07 0.01 0.15 0.01 0.01 0.01 0.01 0.00 0.28 0.34 0.19 0.45 1.13 0.77 0.52
O2' 0.02 0.17 0.00 0.02 0.31 0.25 0.38 0.09 0.35 0.18 0.22 0.33 0.28 0.00 0.06 0.18 0.39 0.67 0.48 0.41
O3' 0.30 0.22 0.04 0.01 0.14 0.02 0.13 0.20 0.08 0.15 0.19 0.17 0.34 0.06 0.00 0.19 0.15 0.22 0.32 0.14
O4' 0.00 0.11 0.02 0.02 0.03 0.01 0.11 0.02 0.15 0.02 0.08 0.04 0.19 0.18 0.19 0.00 0.14 0.69 0.50 0.26
O5' 0.34 0.49 0.66 0.35 0.54 0.01 0.51 0.01 0.48 0.45 0.54 0.56 0.45 0.39 0.15 0.14 0.00 0.02 0.01 0.00
OP1 0.91 1.28 0.96 0.43 1.54 0.26 1.56 0.21 1.42 1.23 1.43 1.59 1.13 0.67 0.22 0.69 0.02 0.00 0.01 0.01
OP2 0.55 0.86 0.52 0.22 1.09 0.28 1.06 0.29 0.90 0.78 1.00 1.16 0.77 0.48 0.32 0.50 0.01 0.01 0.00 0.01
P 0.39 0.58 0.65 0.25 0.69 0.11 0.66 0.01 0.59 0.53 0.66 0.73 0.52 0.41 0.14 0.26 0.00 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.88 0.25 1.03 1.25 0.14 1.42 0.58 1.73 0.89 0.66 0.23 0.59 0.23 1.02 1.34 1.19 1.71 2.33 1.75 1.97
C2 0.66 0.27 0.70 0.88 0.23 1.06 0.76 1.35 0.85 0.56 0.27 0.25 0.31 0.70 0.91 0.93 1.36 1.94 1.62 1.63
C2' 0.72 0.28 0.92 1.14 0.53 1.28 0.32 1.59 0.58 0.47 0.50 0.99 0.29 0.93 1.26 0.99 1.53 2.16 1.54 1.82
C3' 0.93 0.40 1.18 1.41 0.51 1.56 0.28 1.90 0.62 0.61 0.49 0.94 0.45 1.19 1.57 1.20 1.79 2.33 1.63 2.02
C4 0.67 0.30 0.67 0.85 0.28 1.08 0.73 1.39 0.83 0.57 0.29 0.24 0.33 0.67 0.89 0.97 1.36 1.88 1.58 1.59
C4' 1.27 0.56 1.47 1.74 0.22 1.96 0.56 2.30 1.02 0.94 0.30 0.55 0.59 1.45 1.87 1.63 2.16 2.73 1.78 2.28
C5 0.77 0.28 0.80 1.00 0.22 1.25 0.67 1.58 0.85 0.61 0.25 0.33 0.26 0.80 1.07 1.11 1.51 2.05 1.61 1.73
C5' 1.38 0.67 1.55 1.81 0.29 2.07 0.61 2.40 1.05 1.02 0.38 0.49 0.71 1.55 1.96 1.75 2.16 2.76 1.71 2.22
C6 0.83 0.27 0.90 1.11 0.17 1.35 0.63 1.68 0.87 0.64 0.22 0.42 0.23 0.90 1.19 1.17 1.61 2.18 1.65 1.83
N1 0.79 0.25 0.88 1.08 0.14 1.28 0.67 1.59 0.88 0.63 0.23 0.41 0.24 0.87 1.14 1.10 1.57 2.15 1.68 1.81
N3 0.61 0.31 0.61 0.78 0.30 0.97 0.76 1.27 0.82 0.54 0.31 0.21 0.37 0.61 0.80 0.88 1.27 1.81 1.57 1.53
N4 0.62 0.33 0.61 0.78 0.33 1.01 0.74 1.32 0.80 0.55 0.32 0.24 0.39 0.61 0.81 0.93 1.28 1.77 1.54 1.51
O2 0.59 0.27 0.64 0.80 0.25 0.94 0.82 1.20 0.84 0.52 0.30 0.22 0.36 0.65 0.83 0.82 1.26 1.88 1.58 1.55
O2' 0.64 0.65 0.73 0.86 0.94 0.98 0.61 1.21 0.56 0.55 0.89 1.36 0.65 0.76 0.96 0.81 1.16 1.90 1.17 1.47
O3' 1.09 0.90 1.30 1.49 0.99 1.57 0.68 1.88 0.77 0.88 1.01 1.27 0.96 1.34 1.66 1.23 1.78 2.32 1.60 2.08
O4' 1.28 0.63 1.41 1.64 0.35 1.86 0.87 2.17 1.22 1.04 0.37 0.38 0.60 1.38 1.74 1.62 2.10 2.69 1.89 2.25
O5' 1.26 0.66 1.37 1.56 0.42 1.84 0.60 2.12 0.97 0.95 0.48 0.64 0.69 1.40 1.66 1.60 1.89 2.47 1.40 1.92
OP1 1.22 0.65 1.34 1.60 0.65 1.97 0.51 2.35 0.86 0.85 0.72 1.08 0.72 1.37 1.74 1.66 2.03 2.84 1.57 2.16
OP2 1.37 0.82 1.51 1.71 0.59 1.91 0.93 2.19 1.21 1.13 0.58 0.43 0.80 1.50 1.83 1.66 1.99 2.51 1.69 2.05
P 1.31 0.68 1.41 1.61 0.42 1.91 0.66 2.20 1.03 0.99 0.46 0.57 0.70 1.43 1.71 1.67 1.93 2.54 1.45 1.97

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.01 0.02 0.01 0.02 0.03 0.01 0.01 0.02 0.02 0.04 0.01 0.17 0.01 0.14 0.74 0.30 0.29
C2 0.02 0.00 0.11 0.15 0.01 0.04 0.01 0.07 0.01 0.01 0.00 0.01 0.00 0.15 0.16 0.05 0.22 0.96 0.49 0.34
C2' 0.00 0.11 0.00 0.00 0.04 0.01 0.06 0.10 0.08 0.02 0.09 0.05 0.18 0.00 0.02 0.01 0.22 0.54 0.43 0.33
C3' 0.01 0.15 0.00 0.00 0.22 0.01 0.23 0.01 0.21 0.13 0.19 0.24 0.15 0.01 0.01 0.01 0.06 0.45 0.30 0.23
C4 0.02 0.01 0.04 0.22 0.00 0.10 0.01 0.15 0.01 0.01 0.00 0.00 0.01 0.21 0.11 0.04 0.34 1.06 0.68 0.42
C4' 0.01 0.04 0.01 0.01 0.10 0.00 0.13 0.01 0.13 0.06 0.07 0.11 0.06 0.16 0.02 0.00 0.01 0.28 0.21 0.12
C5 0.02 0.01 0.06 0.23 0.01 0.13 0.00 0.18 0.00 0.01 0.01 0.01 0.01 0.20 0.15 0.06 0.38 1.05 0.67 0.45
C5' 0.03 0.07 0.10 0.01 0.15 0.01 0.18 0.00 0.15 0.07 0.10 0.17 0.06 0.06 0.11 0.01 0.01 0.14 0.28 0.01
C6 0.01 0.01 0.08 0.21 0.01 0.13 0.00 0.15 0.00 0.00 0.01 0.01 0.01 0.16 0.12 0.07 0.33 0.99 0.52 0.42
N1 0.01 0.01 0.02 0.13 0.01 0.06 0.01 0.07 0.00 0.00 0.01 0.01 0.01 0.12 0.06 0.02 0.22 0.91 0.43 0.34
N3 0.02 0.00 0.09 0.19 0.00 0.07 0.01 0.10 0.01 0.01 0.00 0.01 0.01 0.19 0.13 0.04 0.28 1.03 0.61 0.38
N4 0.02 0.01 0.05 0.24 0.00 0.11 0.01 0.17 0.01 0.01 0.01 0.00 0.01 0.23 0.14 0.04 0.37 1.06 0.76 0.44
O2 0.04 0.00 0.18 0.15 0.01 0.06 0.01 0.06 0.01 0.01 0.01 0.01 0.00 0.16 0.28 0.08 0.17 0.91 0.44 0.32
O2' 0.01 0.15 0.00 0.01 0.21 0.16 0.20 0.06 0.16 0.12 0.19 0.23 0.16 0.00 0.04 0.11 0.16 0.48 0.42 0.28
O3' 0.17 0.16 0.02 0.01 0.11 0.02 0.15 0.11 0.12 0.06 0.13 0.14 0.28 0.04 0.00 0.11 0.18 0.68 0.39 0.36
O4' 0.01 0.05 0.01 0.01 0.04 0.00 0.06 0.01 0.07 0.02 0.04 0.04 0.08 0.11 0.11 0.00 0.14 0.69 0.28 0.27
O5' 0.14 0.22 0.22 0.06 0.34 0.01 0.38 0.01 0.33 0.22 0.28 0.37 0.17 0.16 0.18 0.14 0.00 0.01 0.01 0.01
OP1 0.74 0.96 0.54 0.45 1.06 0.28 1.05 0.14 0.99 0.91 1.03 1.06 0.91 0.48 0.68 0.69 0.01 0.00 0.01 0.01
OP2 0.30 0.49 0.43 0.30 0.68 0.21 0.67 0.28 0.52 0.43 0.61 0.76 0.44 0.42 0.39 0.28 0.01 0.01 0.00 0.01
P 0.29 0.34 0.33 0.23 0.42 0.12 0.45 0.01 0.42 0.34 0.38 0.44 0.32 0.28 0.36 0.27 0.01 0.01 0.01 0.00