sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-2423-251
X
>2UUA-A342-A51
X
>3R8T-A2414-A2385
X
>3LWP-D15-D39
X
>2CV1-D46-D18
X
>1N78-D46-D18
X
</seq>
<hsp>
0 1:0.216810138063
0 2:0.912213347332
0 3:0.940027862299
0 4:0.945240486125
0 5:0.856078099724
1 2:0.880024761877
1 3:1.0
1 4:0.868870347863
1 5:0.760981929319
2 3:0.737054543599
2 4:0.709393318385
2 5:0.69456153844
3 4:0.646052691426
3 5:0.691026151721
4 5:0.142433125838
</hsp>