ClaRNA

Doublet Group info: classifier/stacking/<</CU

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: stacking
Desc: <</CU
Sub-clusters:
count: 24     show
<</CU/sub-001
<</CU/sub-002
<</CU/sub-003
<</CU/sub-004
<</CU/sub-005
<</CU/sub-006
<</CU/sub-007
<</CU/sub-008
<</CU/sub-009
<</CU/sub-010
<</CU/sub-011
<</CU/sub-012
<</CU/sub-013
<</CU/sub-014
<</CU/sub-015
<</CU/sub-016
<</CU/sub-017
<</CU/sub-018
<</CU/sub-019
<</CU/sub-020
<</CU/sub-021
<</CU/sub-022
<</CU/sub-023
<</CU/sub-024
Members:
count: 6365
download members
1YHQ:02670:02669
3R8O:A756:A755
3G6E:01209:01208
1VQ6:01343:01342
1YIJ:01343:01342
3CME:9106:9105
3CC2:0482:0481
2VQE:A1403:A1402
3G6E:0482:0481
3CCL:01343:01342
2XNZ:A54:A53
3CC4:02388:02387
1QVG:928:927
3OI1:A2716:A2715
1N8R:A1819:A1818
1KD1:A1343:A1342
3BNQ:C20:C19
3OWI:A23:A22
3BNN:C4:C3
3CCS:01343:01342
3OHJ:A2291:A2290
1K8A:A482:A481
3OXD:A23:A22
1VQ6:02712:02711
1K9M:A2670:A2669
1Q81:A2576:A2575
3CPW:0482:0481
2HW8:B30:B29
3CCE:0638:0637
1Q82:A2388:A2387
3CC7:01145:01144
3OI1:A1863:A1862
3CXC:01819:01818
1QVG:026:025
3BNN:B18:B17
3U5D:11604:11603
2QEX:01819:01818
2RD2:B37:B36
3OLB:F6:F5
3CUN:D76:D75
2IZN:R2:R1
3CCE:01476:01475
1YJW:0840:0839
3OHD:A1414:A1413
3OGE:A1073:A1072
3CCE:0387:0386
3OGY:A934:A933
3D2X:A76:A75
3CC7:01209:01208
3G6E:01508:01507
2QA4:0875:0874
3OHC:A13:A12
1FFK:928:927
1ASZ:R65:R64
3F1F:A1218:A1217
3OH5:A1692:A1691
1XOK:A5:A4
3CC2:928:927
2OTL:02576:02575
3CCM:01343:01342
1VQ8:928:927
1FG0:A379:A378
3CD6:01792:01791
3CCV:02388:02387
1VQP:01720:01719
2NZ4:S76:S75
3R8T:A78:A77
3U5F:6821:6820
1YHQ:0387:0386
2ZJR:X144:X143
3F1H:A555:A554
1VQ9:02492:02491
1YIT:0275:0274
3OL7:N9:N8
1SER:T64:T63
1YI2:02576:02575
3BNR:D4:D3
1Q82:A387:A386
3BNS:D4:D3
2PXQ:B22:B21
1S72:0299:0298
1VQ9:01343:01342
3DJ0:A155:A154
1Z7F:C12:C11
2OIU:Q6:Q5
3CC7:02712:02711
3U5D:314:313
3U5H:51285:51284
1M5K:E81:E80
1VQ6:0544:0543
3OL8:J9:J8
3F1E:Z51:Z50
3F1E:A194:A193
3CD6:02670:02669
3OL6:B10:B9
3OHZ:A1115:A1114
2UUA:X2:X1
1VQ8:0161:0160
2QUX:R19:R18
1YI2:02356:02355
1VQK:928:927
3CC7:02093:02092
3CCS:01846:01845
3CCQ:0897:0896
3IVN:A55:A54
2J00:X9:X8
3G6E:0409:0408
1VQ8:0897:0896
3R8S:A1719:A1718
1Q81:A1508:A1507
3DJ0:A35:A34
2J01:A1244:A1243
1LNG:B20:B19
1VQP:02712:02711
3CCV:0409:0408
3CCU:01421:01420
2UUB:A13:A12
1FJG:A13:A12
1VQL:01508:01507
3CCJ:0933:0932
2OTL:02356:02355
3MXH:R66:R65
1FFK:0481:0480
3G6E:0275:0274
1VQK:02712:02711
1M90:A409:A408
1QRT:B37:B36
2NZ4:Q43:Q42
1NTA:B12:B11
1K9M:A1101:A1100
1M90:A275:A274
2ZJR:X212:X211
1YJW:02698:02697
1YJ9:01382:01381
3I56:01421:01420
3G71:0114:0113
1Q86:A1382:A1381
1Q81:A1838:A1837
3U5B:21547:21546
2J00:A1290:A1289
3DIL:A155:A154
2QA4:0387:0386
1Q81:A2144:A2143
1YIJ:0876:0875
1VQL:026:025
3CC4:0289:0288
3CCQ:01226:01225
3CCE:0196:0195
1VQO:01792:01791
3G6E:01476:01475
3CMA:0299:0298
1VQK:01209:01208
1YJW:01846:01845
2HOL:A6:A5
1S72:0100:099
3F1H:A215:A214
3OLB:B13:B12
1Q81:A409:A408
1YJW:01657:01656
1VQ4:0876:0875
1VQ9:02712:02711
1VQN:02011:02010
2QEX:0100:099
3CCE:0114:0113
3OHK:A766:A765
1S72:01792:01791
2OTL:02341:02340
1S72:02144:02143
2ZJR:X161:X160
1SER:T62:T61
1VQM:0876:0875
3CCV:0161:0160
3CXC:01792:01791
1Q82:A2712:A2711
1K9M:A1657:A1656
1K9M:A897:A896
1VQN:01792:01791
1YJN:0544:0543
1YI2:02093:02092
3G71:0167:0166
3DW5:A4:A3
2UUA:A1290:A1289
2J02:A1468:A1467
2QUS:A40:A39
1JJ2:0638:0637
3OHJ:A142:A141
3OVA:C29:C28
3S4P:B18:B17
3CMA:0638:0637
1NJI:A897:A896
1VQ9:02087:02086
3OUY:C29:C28
3CD6:01542:01541
2ESJ:B18:B17
1VQ4:02229:02228
1FFK:01610:01609
1VQ6:0338:0337
3CMA:01101:01100
1M90:A286:A285
3CPW:0573:0572
3CCQ:01846:01845
3IQR:A7:A6
3U5B:2872:2871
1VQ6:01846:01845
2OTJ:01846:01845
3CC4:0897:0896
3CC2:970:969
1VQ8:01382:01381
1YJ9:01423:01422
3F1H:A2667:A2666
1YIJ:02144:02143
1VQL:997:996
1M90:A1226:A1225
1VQM:02670:02669
1YIT:02172:02171
1VQ8:02011:02010
3R8O:A1494:A1493
3HL2:E44:E43
3CCR:0167:0166
397D:B3:B2
1VQ8:02698:02697
3CCL:02229:02228
2VQE:A214:A213
1YIJ:0114:0113
3OVB:C29:C28
2G5K:B19:B18
1K9M:A2470:A2469
1YJ9:01226:01225
1VQM:01226:01225
1JJ2:997:996
3OWZ:A44:A43
2QEX:01657:01656
3CC2:01226:01225
1VQO:02698:02697
1VQN:0100:099
2H0S:B112:B111
2R8S:R119:R118
3CCE:0933:0932
3CCQ:02144:02143
3CMA:0100:099
3OHD:A214:A213
1YHQ:02470:02469
255D:A10:A9
1QVG:0605:0604
1JJ2:0288:0287
3R8T:A2643:A2642
1VQ9:01874:01873
1NTA:A4:A3
1YHQ:02093:02092
1NJI:A1382:A1381
1YHQ:01846:01845
1NJI:A1226:A1225
3CPW:997:996
1NUV:H9:H8
3U5B:2588:2587
3CMA:0876:0875
1HQ1:B4:B3
3CC4:02144:02143
3CD6:0114:0113
2ZM5:D66:D65
1S72:0161:0160
3F1H:A1451:A1450
2R8S:R43:R42
1VQ9:997:996
3OHJ:A2342:A2341
1VQO:0288:0287
1HR2:B126:B125
2J01:A1381:A1380
1NJI:B97:B96
3OH7:A2345:A2344
3R8N:A1301:A1299
2J00:A1279:A1277
3OGY:A1279:A1277
3OHD:A1279:A1277
1Q81:A664:A663
1NJI:A664:A663
1XMQ:A371:A60
3CCJ:02432:02431
3CME:0664:0663
1Q81:A2432:A2431
3CCM:01598:01597
1QVG:0159:0158
2OTL:01598:01597
3CCU:0159:0158
1YIT:01730:01728
3CD6:0159:0158
1K8A:A159:A158
2VQE:A412:A410
3CCL:02432:02431
3I56:0127:0125
1N8R:A159:A158
3CCS:0127:0125
3G71:0127:0125
3U5B:2657:2656
3CCE:01598:01597
1VQ7:02432:02431
3ADB:D36:D35
1VQ4:0127:0125
1S72:0127:0125
3GCA:A6:A5
2ZJR:X904:X1101
1Q86:A1776:A1775
3FOZ:D9:D8
1YHQ:01776:01775
1FJG:A1126:A1125
2PWT:B4:B3
2UUB:A1126:A1125
3R8N:A1405:A1404
2J00:A1126:A1125
3R8O:A1201:A1200
3OGY:A1359:A1358
3U5F:61638:61637
3OGY:A1384:A1383
3OI1:A1635:A1633
3U5F:6226:6225
1QTQ:B37:B36
2VQE:A1384:A1383
1EFW:D12:D11
1EVV:A12:A11
3OL7:B6:B5
3OLB:N1:N0
3OWI:A27:A26
3U5B:21234:21233
3G71:0825:0824
3U5D:12405:12404
1YIJ:0825:0824
3CCR:02636:02635
1QF6:B12:B11
1VQK:02636:02635
3CD6:0825:0824
3CME:0838:0837
1VQM:0825:0824
1KD1:A2636:A2635
1VQL:0838:0837
3CC4:0825:0824
3R8T:A2298:A2297
1Q82:A270:A269
1KD1:A825:A824
3G6E:01632:01631
3I56:02636:02635
3CPW:01632:01631
1JJ2:02636:02635
1S72:02636:02635
3D0U:A32:A31
3OH5:A1873:A1872
3CCJ:02670:02669
3OH7:A1873:A1872
1ASZ:R35:R34
2J03:A1873:A1872
1VQ8:01981:01980
3OHZ:A1777:A1776
3CMA:01632:01631
3CCE:0756:0755
3CCM:01632:01631
3F1F:A1128:A1127
2OTL:02511:02510
1VQM:01981:01980
3CPW:02175:02174
2OTL:01632:01631
1QVG:01632:01631
3U5B:21433:21432
1S72:01632:01631
2QA4:02336:02335
1YJN:02175:02174
3DIM:A169:A168
3BNP:B4:B3
3U5H:5932:5931
3OLA:J7:J6
1VQ7:02511:02510
1KD1:A2175:A2174
1YJW:0756:0755
3OLA:F6:F5
1M90:A756:A755
3U5D:11970:11969
1K9M:A838:A837
1VQ6:0548:0547
1YJN:01981:01980
1N8R:A2337:A2336
3OGE:A1414:A1413
1Q86:A651:A650
1YJ9:02337:02336
1K8A:A1981:A1980
1VQ4:0838:0837
1VQ5:0756:0755
3I56:02337:02336
3CCJ:01476:01475
3U5D:12434:12433
1N32:A1328:A1327
3G71:02337:02336
3CCJ:01264:01263
2NOK:C18:C17
3OHZ:A184:A183
2ZJR:X466:X465
3OLA:B13:B12
2QEX:0548:0547
2CV1:C70:C69
3U5H:5927:5926
3B31:A7:A6
3I56:0838:0837
1Q81:A838:A837
3GS5:A7:A6
1X9C:A7:A6
3KNK:A975:A974
3OLA:J14:J13
3CME:01145:01144
3RKF:D55:D54
1XMQ:A1504:A1503
3OH7:A970:A969
1YI2:0838:0837
2QA4:0548:0547
1VC7:B14:B13
3CPW:0391:0390
1VQ7:0482:0481
1Q81:A1209:A1208
2J03:A766:A765
3U5D:12157:12156
1VQL:02337:02336
2BGG:Q2:Q1
2OTJ:02087:02086
3KNK:A1249:A1248
3CCE:0838:0837
1VQK:02337:02336
3R8S:B48:B47
3OI1:A2513:A2512
1VQ4:01343:01342
3OL6:N14:N13
3R8N:A874:A873
3OL6:B13:B12
2J03:A2665:A2664
2EES:A55:A54
2ZJR:X1085:X1084
1VQL:0391:0390
1VQO:01264:01263
1VQ5:02087:02086
1QVG:01981:01980
2J01:A2665:A2664
3OL9:N1:N0
3BNS:B5:B4
2ZJR:X207:X206
3CCJ:02093:02092
1YI2:01536:01535
3CCQ:02670:02669
1YIT:01819:01818
1YYK:C8:C7
1JJ2:01542:01541
1N8R:A1874:A1873
1DUH:A20:A19
2PXT:B22:B21
2ZJR:X2517:X2516
3CPW:0605:0604
3OLB:N9:N8
1Q82:A1657:A1656
3CC7:01874:01873
1VQ8:02229:02228
1YI2:01504:01503
1S03:A38:A37
1YIJ:01423:01422
1VQ8:01874:01873
1KD1:A933:A932
1FFK:01817:01816
3CME:01226:01225
1C0A:B12:B11
1Q86:A338:A337
3CMA:970:969
3E5E:A3:A2
1K9M:A1874:A1873
1VQN:0573:0572
1M5V:P7:P6
2QEX:0573:0572
2I82:H20:H19
3CPW:01874:01873
3OWI:A44:A43
2H0W:B55:B54
3OWZ:A4:A3
3CCM:0573:0572
3CPW:01504:01503
1F27:B7:B6
2CSX:C41:C40
1YHQ:01382:01381
3OXE:B44:B43
299D:B10:B9
3CC4:0544:0543
3CC2:0933:0932
1JJ2:0933:0932
1I6U:D15:D14
3CC4:997:996
1K9M:A605:A604
1VQ8:01504:01503
3OHY:A214:A213
3EGZ:B64:B63
1VQK:0286:0285
1VQO:0605:0604
1VQ9:01504:01503
1NJI:A161:A160
1QVG:01874:01873
3CCE:0573:0572
2EET:A65:A64
1IL2:C65:C64
3U5D:1701:1700
Closest classifer groups: show all      show selected
Group Members RMSD
stacking/>> 6365 0.074
stacking/<< 4035 0.334
stacking/<> 137 0.914
base-phosphate/H_7BPh 346 1.251
previously-uncategorized/neighbours-0024 212 1.355
base-ribose/H_0BR 623 1.407
base-ribose/W_5BR 216 1.667
base-phosphate/H_8BPh 1074 1.712
bp/HS_cis 1 1.765
bp/SH_cis 1 1.765

Extra

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Reference image (generated by PyMOL):
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All members (generated by PyMOL):
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