ClaRNA

Doublet Group distance statistics: 37237

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Distances from reference structure (by RMSD)

4, 5, 1, 2, 4, 6, 2, 11, 26, 23, 32, 6, 8, 9, 6, 0, 1, 2, 5, 88,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
O4' B 0, 0.211, 0.940, 1.669, 3.194 max_d=3.194 avg_d=0.940 std_dev=0.729
C1' B 0, 0.360, 1.158, 1.956, 3.263 max_d=3.263 avg_d=1.158 std_dev=0.798
N1 B 0, 0.391, 1.223, 2.054, 3.033 max_d=3.033 avg_d=1.223 std_dev=0.831
C6 B 0, 0.223, 1.059, 1.894, 3.064 max_d=3.064 avg_d=1.059 std_dev=0.835
C5 A 0, 0.278, 1.135, 1.992, 3.170 max_d=3.170 avg_d=1.135 std_dev=0.857
O5' B 0, 0.351, 1.213, 2.075, 5.047 max_d=5.047 avg_d=1.213 std_dev=0.862
C2 A 0, 0.809, 1.742, 2.674, 3.989 max_d=3.989 avg_d=1.742 std_dev=0.932
C4 A 0, 0.528, 1.476, 2.424, 3.593 max_d=3.593 avg_d=1.476 std_dev=0.948
C6 A 0, 0.263, 1.257, 2.251, 3.516 max_d=3.516 avg_d=1.257 std_dev=0.994
N3 A 0, 0.826, 1.824, 2.821, 3.572 max_d=3.572 avg_d=1.824 std_dev=0.997
N1 A 0, 0.443, 1.461, 2.478, 3.792 max_d=3.792 avg_d=1.461 std_dev=1.018
C4' B 0, 0.096, 1.162, 2.228, 5.030 max_d=5.030 avg_d=1.162 std_dev=1.066
O2 A 0, 1.075, 2.154, 3.234, 4.874 max_d=4.874 avg_d=2.154 std_dev=1.080
C5 B 0, 0.371, 1.464, 2.556, 4.015 max_d=4.015 avg_d=1.464 std_dev=1.092
P B 0, 0.485, 1.622, 2.759, 6.115 max_d=6.115 avg_d=1.622 std_dev=1.137
C5' B 0, 0.175, 1.319, 2.463, 5.861 max_d=5.861 avg_d=1.319 std_dev=1.144
OP2 B 0, 0.671, 1.839, 3.008, 6.887 max_d=6.887 avg_d=1.839 std_dev=1.169
C2' B 0, 0.352, 1.550, 2.747, 4.765 max_d=4.765 avg_d=1.550 std_dev=1.198
C2 B 0, 0.612, 1.845, 3.078, 4.362 max_d=4.362 avg_d=1.845 std_dev=1.233
C1' A 0, 0.553, 1.855, 3.158, 4.335 max_d=4.335 avg_d=1.855 std_dev=1.302
C3' B 0, 0.233, 1.555, 2.878, 5.542 max_d=5.542 avg_d=1.555 std_dev=1.322
N4 A 0, 0.332, 1.694, 3.055, 5.947 max_d=5.947 avg_d=1.694 std_dev=1.362
C4 B 0, 0.597, 1.967, 3.338, 5.234 max_d=5.234 avg_d=1.967 std_dev=1.370
O2' B 0, 0.355, 1.775, 3.195, 6.383 max_d=6.383 avg_d=1.775 std_dev=1.420
O2 B 0, 0.840, 2.272, 3.704, 4.842 max_d=4.842 avg_d=2.272 std_dev=1.432
C2' A 0, 0.453, 1.939, 3.425, 5.673 max_d=5.673 avg_d=1.939 std_dev=1.486
N3 B 0, 0.669, 2.160, 3.651, 5.492 max_d=5.492 avg_d=2.160 std_dev=1.491
OP1 B 0, 0.947, 2.473, 3.999, 8.081 max_d=8.081 avg_d=2.473 std_dev=1.526
N4 B 0, 0.736, 2.455, 4.174, 6.448 max_d=6.448 avg_d=2.455 std_dev=1.719
O2' A 0, 0.593, 2.315, 4.037, 6.533 max_d=6.533 avg_d=2.315 std_dev=1.722
O4' A 0, 0.398, 2.184, 3.971, 6.309 max_d=6.309 avg_d=2.184 std_dev=1.786
O3' B 0, 0.182, 2.036, 3.890, 7.476 max_d=7.476 avg_d=2.036 std_dev=1.854
C3' A 0, 0.120, 2.242, 4.365, 7.831 max_d=7.831 avg_d=2.242 std_dev=2.123
C4' A 0, 0.097, 2.404, 4.711, 8.077 max_d=8.077 avg_d=2.404 std_dev=2.307
O3' A 0, 0.236, 2.801, 5.366, 10.473 max_d=10.473 avg_d=2.801 std_dev=2.565
C5' A 0, 0.145, 2.758, 5.370, 9.807 max_d=9.807 avg_d=2.758 std_dev=2.613
O5' A 0, 0.196, 2.820, 5.443, 9.108 max_d=9.108 avg_d=2.820 std_dev=2.624
OP2 A 0, 0.352, 3.400, 6.448, 10.956 max_d=10.956 avg_d=3.400 std_dev=3.048
P A 0, 0.132, 3.298, 6.463, 11.095 max_d=11.095 avg_d=3.298 std_dev=3.165
OP1 A 0, 0.056, 3.907, 7.758, 12.612 max_d=12.612 avg_d=3.907 std_dev=3.851

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.02 0.02 0.01 0.02 0.08 0.01 0.01 0.03 0.02 0.05 0.02 0.26 0.01 0.28 0.41 0.50 0.33
C2 0.03 0.00 0.18 0.24 0.01 0.07 0.01 0.16 0.01 0.01 0.01 0.01 0.01 0.23 0.23 0.10 0.52 0.55 0.83 0.57
C2' 0.01 0.18 0.00 0.01 0.07 0.02 0.14 0.17 0.17 0.03 0.14 0.08 0.32 0.00 0.04 0.02 0.36 0.46 0.48 0.37
C3' 0.02 0.24 0.01 0.00 0.33 0.01 0.35 0.04 0.31 0.20 0.29 0.35 0.25 0.03 0.01 0.02 0.35 0.44 0.36 0.30
C4 0.02 0.01 0.07 0.33 0.00 0.14 0.01 0.26 0.01 0.01 0.00 0.01 0.01 0.30 0.21 0.04 0.76 0.77 1.26 0.86
C4' 0.01 0.07 0.02 0.01 0.14 0.00 0.19 0.01 0.18 0.08 0.09 0.15 0.09 0.26 0.04 0.00 0.03 0.27 0.41 0.16
C5 0.02 0.01 0.14 0.35 0.01 0.19 0.00 0.31 0.00 0.01 0.01 0.01 0.02 0.33 0.27 0.08 0.81 0.81 1.30 0.91
C5' 0.08 0.16 0.17 0.04 0.26 0.01 0.31 0.00 0.27 0.16 0.20 0.29 0.15 0.11 0.19 0.02 0.01 0.29 0.40 0.02
C6 0.01 0.01 0.17 0.31 0.01 0.18 0.00 0.27 0.00 0.01 0.01 0.01 0.02 0.29 0.23 0.11 0.71 0.70 1.03 0.76
N1 0.01 0.01 0.03 0.20 0.01 0.08 0.01 0.16 0.01 0.00 0.01 0.01 0.02 0.18 0.13 0.03 0.52 0.55 0.77 0.55
N3 0.03 0.01 0.14 0.29 0.00 0.09 0.01 0.20 0.01 0.01 0.00 0.01 0.01 0.27 0.21 0.08 0.64 0.66 1.05 0.72
N4 0.02 0.01 0.08 0.35 0.01 0.15 0.01 0.29 0.01 0.01 0.01 0.00 0.02 0.33 0.25 0.05 0.81 0.85 1.41 0.95
O2 0.05 0.01 0.32 0.25 0.01 0.09 0.02 0.15 0.02 0.02 0.01 0.02 0.00 0.31 0.39 0.17 0.40 0.48 0.67 0.44
O2' 0.02 0.23 0.00 0.03 0.30 0.26 0.33 0.11 0.29 0.18 0.27 0.33 0.31 0.00 0.08 0.18 0.24 0.39 0.50 0.29
O3' 0.26 0.23 0.04 0.01 0.21 0.04 0.27 0.19 0.23 0.13 0.21 0.25 0.39 0.08 0.00 0.18 0.35 0.58 0.58 0.41
O4' 0.01 0.10 0.02 0.02 0.04 0.00 0.08 0.02 0.11 0.03 0.08 0.05 0.17 0.18 0.18 0.00 0.27 0.45 0.52 0.36
O5' 0.28 0.52 0.36 0.35 0.76 0.03 0.81 0.01 0.71 0.52 0.64 0.81 0.40 0.24 0.35 0.27 0.00 0.02 0.02 0.01
OP1 0.41 0.55 0.46 0.44 0.77 0.27 0.81 0.29 0.70 0.55 0.66 0.85 0.48 0.39 0.58 0.45 0.02 0.00 0.01 0.01
OP2 0.50 0.83 0.48 0.36 1.26 0.41 1.30 0.40 1.03 0.77 1.05 1.41 0.67 0.50 0.58 0.52 0.02 0.01 0.00 0.01
P 0.33 0.57 0.37 0.30 0.86 0.16 0.91 0.02 0.76 0.55 0.72 0.95 0.44 0.29 0.41 0.36 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 2.83 3.76 3.08 2.58 3.49 1.95 2.83 1.28 2.61 3.09 3.91 3.62 4.08 3.13 2.64 2.12 1.13 1.09 0.94 0.57
C2 2.56 3.76 2.61 2.09 3.89 1.55 3.14 0.94 2.73 3.05 4.15 4.16 3.89 2.57 1.97 1.86 0.90 1.06 0.83 0.36
C2' 2.66 3.57 2.95 2.52 3.46 1.87 2.84 1.29 2.54 2.93 3.78 3.69 3.87 3.01 2.66 1.99 1.19 1.19 1.15 0.78
C3' 2.71 3.36 3.13 2.86 3.19 2.17 2.68 1.60 2.46 2.84 3.47 3.40 3.66 3.24 3.17 2.12 1.43 1.27 1.19 0.91
C4 2.01 3.00 2.00 1.60 3.32 1.18 2.83 0.74 2.39 2.50 3.36 3.55 2.98 1.90 1.44 1.47 0.75 1.07 0.80 0.33
C4' 2.90 3.40 3.37 2.99 3.00 2.30 2.53 1.62 2.42 2.91 3.38 3.12 3.80 3.57 3.30 2.28 1.36 1.10 1.06 0.77
C5 1.94 2.72 2.00 1.72 2.86 1.27 2.50 0.84 2.21 2.33 2.95 2.98 2.72 1.87 1.61 1.46 0.83 1.04 0.86 0.34
C5' 2.82 3.05 3.35 3.10 2.71 2.41 2.37 1.72 2.28 2.70 2.98 2.84 3.40 3.60 3.54 2.29 1.41 1.06 1.13 0.83
C6 2.32 3.07 2.48 2.17 3.01 1.61 2.57 1.08 2.36 2.63 3.22 3.09 3.17 2.38 2.12 1.76 1.01 1.06 0.92 0.49
N1 2.59 3.58 2.74 2.29 3.51 1.70 2.89 1.09 2.60 2.96 3.81 3.65 3.75 2.70 2.24 1.92 1.01 1.07 0.89 0.46
N3 2.32 3.50 2.31 1.81 3.81 1.34 3.12 0.80 2.64 2.85 3.94 4.13 3.54 2.25 1.65 1.68 0.80 1.07 0.80 0.33
N4 1.78 2.69 1.77 1.39 3.09 1.06 2.67 0.73 2.20 2.25 3.06 3.38 2.65 1.71 1.24 1.31 0.73 1.10 0.81 0.48
O2 2.74 4.04 2.79 2.19 4.13 1.63 3.27 0.98 2.84 3.22 4.47 4.47 4.24 2.79 2.08 1.98 0.92 1.06 0.82 0.37
O2' 2.79 3.79 3.04 2.52 3.63 1.90 2.94 1.27 2.63 3.06 4.01 3.89 4.16 3.17 2.65 2.08 1.16 1.18 1.20 0.80
O3' 2.72 3.34 3.16 2.91 3.20 2.23 2.69 1.67 2.44 2.82 3.47 3.46 3.67 3.33 3.31 2.15 1.48 1.34 1.25 1.00
O4' 3.01 3.66 3.37 2.88 3.17 2.23 2.63 1.51 2.55 3.10 3.63 3.20 4.05 3.49 3.01 2.32 1.28 1.06 0.95 0.66
O5' 2.67 2.72 3.18 3.24 2.44 2.58 2.17 2.03 2.13 2.50 2.63 2.58 2.97 3.30 3.73 2.31 1.73 1.23 1.32 1.07
OP1 2.44 2.26 2.95 3.14 2.16 2.66 1.90 2.21 1.81 2.13 2.22 2.47 2.50 3.25 3.91 2.24 1.75 1.54 1.31 1.21
OP2 2.05 2.11 2.37 2.69 2.35 2.28 2.18 2.08 1.94 1.99 2.25 2.66 2.15 2.44 3.18 1.92 1.86 1.70 1.79 1.55
P 2.47 2.29 2.96 3.22 2.17 2.68 1.95 2.21 1.89 2.19 2.23 2.41 2.49 3.13 3.92 2.27 1.81 1.41 1.36 1.21

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.02 0.02 0.01 0.02 0.07 0.02 0.01 0.02 0.02 0.04 0.02 0.17 0.01 0.18 0.31 0.32 0.21
C2 0.02 0.00 0.13 0.20 0.01 0.08 0.01 0.21 0.01 0.01 0.01 0.01 0.01 0.21 0.20 0.09 0.36 0.40 0.50 0.41
C2' 0.01 0.13 0.00 0.01 0.06 0.03 0.12 0.13 0.15 0.03 0.10 0.06 0.24 0.00 0.05 0.02 0.34 0.38 0.46 0.35
C3' 0.02 0.20 0.01 0.00 0.26 0.01 0.27 0.03 0.24 0.16 0.24 0.28 0.21 0.02 0.01 0.03 0.24 0.35 0.32 0.21
C4 0.02 0.01 0.06 0.26 0.00 0.14 0.00 0.33 0.01 0.01 0.00 0.00 0.01 0.25 0.22 0.04 0.49 0.54 0.76 0.61
C4' 0.01 0.08 0.03 0.01 0.14 0.00 0.18 0.01 0.16 0.08 0.10 0.15 0.09 0.23 0.04 0.01 0.02 0.28 0.26 0.09
C5 0.02 0.01 0.12 0.27 0.00 0.18 0.00 0.37 0.00 0.01 0.01 0.01 0.02 0.26 0.24 0.08 0.51 0.56 0.77 0.61
C5' 0.07 0.21 0.13 0.03 0.33 0.01 0.37 0.00 0.32 0.20 0.27 0.36 0.17 0.12 0.14 0.02 0.01 0.30 0.28 0.02
C6 0.02 0.01 0.15 0.24 0.01 0.16 0.00 0.32 0.00 0.00 0.01 0.01 0.02 0.23 0.21 0.10 0.43 0.44 0.60 0.48
N1 0.01 0.01 0.03 0.16 0.01 0.08 0.01 0.20 0.00 0.00 0.01 0.01 0.02 0.14 0.13 0.02 0.32 0.36 0.45 0.35
N3 0.02 0.01 0.10 0.24 0.00 0.10 0.01 0.27 0.01 0.01 0.00 0.01 0.01 0.24 0.21 0.07 0.43 0.47 0.64 0.52
N4 0.02 0.01 0.06 0.28 0.00 0.15 0.01 0.36 0.01 0.01 0.01 0.00 0.02 0.27 0.25 0.04 0.53 0.61 0.86 0.68
O2 0.04 0.01 0.24 0.21 0.01 0.09 0.02 0.17 0.02 0.02 0.01 0.02 0.00 0.29 0.29 0.15 0.31 0.39 0.43 0.35
O2' 0.02 0.21 0.00 0.02 0.25 0.23 0.26 0.12 0.23 0.14 0.24 0.27 0.29 0.00 0.08 0.15 0.21 0.39 0.44 0.27
O3' 0.17 0.20 0.05 0.01 0.22 0.04 0.24 0.14 0.21 0.13 0.21 0.25 0.29 0.08 0.00 0.12 0.26 0.52 0.42 0.30
O4' 0.01 0.09 0.02 0.03 0.04 0.01 0.08 0.02 0.10 0.02 0.07 0.04 0.15 0.15 0.12 0.00 0.15 0.34 0.41 0.20
O5' 0.18 0.36 0.34 0.24 0.49 0.02 0.51 0.01 0.43 0.32 0.43 0.53 0.31 0.21 0.26 0.15 0.00 0.02 0.02 0.01
OP1 0.31 0.40 0.38 0.35 0.54 0.28 0.56 0.30 0.44 0.36 0.47 0.61 0.39 0.39 0.52 0.34 0.02 0.00 0.01 0.01
OP2 0.32 0.50 0.46 0.32 0.76 0.26 0.77 0.28 0.60 0.45 0.64 0.86 0.43 0.44 0.42 0.41 0.02 0.01 0.00 0.01
P 0.21 0.41 0.35 0.21 0.61 0.09 0.61 0.02 0.48 0.35 0.52 0.68 0.35 0.27 0.30 0.20 0.01 0.01 0.01 0.00