ClaRNA

Doublet Group distance statistics: 40703

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Distances from reference structure (by RMSD)

16, 44, 53, 11, 3, 0, 0, 0, 0, 1, 38, 13, 6, 1, 0, 0, 2, 26, 35, 251,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 B 0, 0.198, 0.726, 1.253, 2.402 max_d=2.402 avg_d=0.726 std_dev=0.527
N1 A 0, 0.436, 1.062, 1.687, 2.318 max_d=2.318 avg_d=1.062 std_dev=0.625
C4 A 0, 0.292, 0.924, 1.557, 2.356 max_d=2.356 avg_d=0.924 std_dev=0.632
C2 B 0, 0.442, 1.151, 1.860, 3.882 max_d=3.882 avg_d=1.151 std_dev=0.709
N3 A 0, 0.280, 0.996, 1.712, 3.784 max_d=3.784 avg_d=0.996 std_dev=0.716
C6 B 0, 0.366, 1.112, 1.858, 2.871 max_d=2.871 avg_d=1.112 std_dev=0.746
C6 A 0, 0.581, 1.358, 2.134, 2.621 max_d=2.621 avg_d=1.358 std_dev=0.776
C5 A 0, 0.646, 1.494, 2.342, 3.086 max_d=3.086 avg_d=1.494 std_dev=0.848
C2 A 0, 0.212, 1.098, 1.984, 3.592 max_d=3.592 avg_d=1.098 std_dev=0.886
N9 A 0, 0.522, 1.472, 2.422, 3.025 max_d=3.025 avg_d=1.472 std_dev=0.950
C1' A 0, 0.713, 1.666, 2.618, 3.794 max_d=3.794 avg_d=1.666 std_dev=0.952
O2 B 0, 0.598, 1.748, 2.898, 5.808 max_d=5.808 avg_d=1.748 std_dev=1.150
C2' A 0, 0.756, 1.948, 3.140, 4.834 max_d=4.834 avg_d=1.948 std_dev=1.192
N6 A 0, 0.819, 2.055, 3.292, 4.017 max_d=4.017 avg_d=2.055 std_dev=1.237
N3 B 0, 0.621, 1.869, 3.118, 3.884 max_d=3.884 avg_d=1.869 std_dev=1.249
C1' B 0, 0.353, 1.675, 2.997, 4.445 max_d=4.445 avg_d=1.675 std_dev=1.322
O2' A 0, 0.950, 2.364, 3.779, 7.099 max_d=7.099 avg_d=2.364 std_dev=1.415
C5 B 0, 0.744, 2.160, 3.575, 4.339 max_d=4.339 avg_d=2.160 std_dev=1.415
N7 A 0, 0.959, 2.407, 3.855, 5.060 max_d=5.060 avg_d=2.407 std_dev=1.448
O4' A 0, 1.155, 2.608, 4.061, 4.786 max_d=4.786 avg_d=2.608 std_dev=1.453
C8 A 0, 0.831, 2.286, 3.741, 5.160 max_d=5.160 avg_d=2.286 std_dev=1.455
C3' A 0, 0.921, 2.414, 3.908, 5.737 max_d=5.737 avg_d=2.414 std_dev=1.493
O4' B 0, 0.605, 2.140, 3.675, 4.786 max_d=4.786 avg_d=2.140 std_dev=1.535
C4' A 0, 1.302, 2.901, 4.500, 5.976 max_d=5.976 avg_d=2.901 std_dev=1.599
C4 B 0, 0.832, 2.460, 4.088, 4.811 max_d=4.811 avg_d=2.460 std_dev=1.628
O3' A 0, 0.812, 2.574, 4.336, 6.302 max_d=6.302 avg_d=2.574 std_dev=1.762
O5' B 0, 0.438, 2.245, 4.052, 5.560 max_d=5.560 avg_d=2.245 std_dev=1.807
C2' B 0, 0.594, 2.598, 4.601, 6.428 max_d=6.428 avg_d=2.598 std_dev=2.004
C5' A 0, 1.659, 3.812, 5.964, 8.128 max_d=8.128 avg_d=3.812 std_dev=2.153
C4' B 0, 0.753, 2.906, 5.059, 5.931 max_d=5.931 avg_d=2.906 std_dev=2.153
OP2 B 0, 0.809, 2.979, 5.148, 7.577 max_d=7.577 avg_d=2.979 std_dev=2.170
P B 0, 0.495, 2.707, 4.919, 7.110 max_d=7.110 avg_d=2.707 std_dev=2.212
C5' B 0, 0.783, 3.009, 5.235, 6.512 max_d=6.512 avg_d=3.009 std_dev=2.226
C3' B 0, 0.616, 2.854, 5.091, 6.623 max_d=6.623 avg_d=2.854 std_dev=2.237
O5' A 0, 1.784, 4.253, 6.723, 9.268 max_d=9.268 avg_d=4.253 std_dev=2.469
N4 B 0, 1.157, 3.656, 6.156, 7.295 max_d=7.295 avg_d=3.656 std_dev=2.499
OP1 B 0, 1.062, 3.745, 6.428, 9.090 max_d=9.090 avg_d=3.745 std_dev=2.683
O2' B 0, 0.926, 3.706, 6.486, 8.876 max_d=8.876 avg_d=3.706 std_dev=2.780
O3' B 0, 1.009, 4.167, 7.326, 9.344 max_d=9.344 avg_d=4.167 std_dev=3.159
P A 0, 2.041, 5.202, 8.363, 11.830 max_d=11.830 avg_d=5.202 std_dev=3.161
OP1 A 0, 2.149, 5.496, 8.842, 12.257 max_d=12.257 avg_d=5.496 std_dev=3.347
OP2 A 0, 2.165, 5.595, 9.025, 13.301 max_d=13.301 avg_d=5.595 std_dev=3.430

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.01 0.02 0.01 0.01 0.08 0.02 0.01 0.03 0.03 0.02 0.01 0.01 0.02 0.34 0.01 0.33 0.66 0.44 0.35
C2 0.03 0.00 0.31 0.22 0.01 0.24 0.01 0.33 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.48 0.35 0.33 0.59 0.99 0.95 0.57
C2' 0.00 0.31 0.00 0.00 0.16 0.01 0.09 0.22 0.15 0.16 0.24 0.30 0.12 0.10 0.03 0.00 0.03 0.02 0.49 0.72 0.52 0.53
C3' 0.01 0.22 0.00 0.00 0.24 0.00 0.35 0.02 0.34 0.39 0.28 0.18 0.39 0.42 0.24 0.02 0.01 0.02 0.29 0.48 0.21 0.23
C4 0.02 0.01 0.16 0.24 0.00 0.11 0.00 0.17 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.32 0.19 0.17 0.51 0.91 0.88 0.52
C4' 0.01 0.24 0.01 0.00 0.11 0.00 0.13 0.01 0.14 0.26 0.18 0.23 0.15 0.23 0.10 0.31 0.03 0.00 0.02 0.24 0.35 0.11
C5 0.01 0.01 0.09 0.35 0.00 0.13 0.00 0.19 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.35 0.11 0.08 0.64 1.09 1.19 0.73
C5' 0.08 0.33 0.22 0.02 0.17 0.01 0.19 0.00 0.22 0.33 0.28 0.31 0.24 0.31 0.13 0.10 0.21 0.01 0.01 0.29 0.41 0.02
C6 0.02 0.01 0.15 0.34 0.01 0.14 0.01 0.22 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.40 0.13 0.15 0.65 1.09 1.24 0.71
C8 0.01 0.01 0.16 0.39 0.01 0.26 0.01 0.33 0.01 0.00 0.01 0.01 0.02 0.00 0.00 0.40 0.22 0.19 0.80 1.28 1.23 0.96
N1 0.03 0.00 0.24 0.28 0.01 0.18 0.01 0.28 0.00 0.01 0.00 0.01 0.01 0.01 0.02 0.44 0.23 0.26 0.62 1.04 1.10 0.62
N3 0.03 0.01 0.30 0.18 0.00 0.23 0.01 0.31 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.45 0.39 0.33 0.52 0.88 0.82 0.49
N6 0.02 0.01 0.12 0.39 0.01 0.15 0.01 0.24 0.00 0.02 0.01 0.01 0.00 0.02 0.02 0.41 0.16 0.11 0.72 1.18 1.44 0.83
N7 0.01 0.01 0.10 0.42 0.01 0.23 0.00 0.31 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.40 0.24 0.10 0.81 1.32 1.44 1.00
N9 0.01 0.01 0.03 0.24 0.01 0.10 0.01 0.13 0.01 0.00 0.02 0.01 0.02 0.01 0.00 0.22 0.11 0.02 0.52 0.91 0.80 0.56
O2' 0.02 0.48 0.00 0.02 0.32 0.31 0.35 0.10 0.40 0.40 0.44 0.45 0.41 0.40 0.22 0.00 0.06 0.22 0.44 0.67 0.53 0.49
O3' 0.34 0.35 0.03 0.01 0.19 0.03 0.11 0.21 0.13 0.22 0.23 0.39 0.16 0.24 0.11 0.06 0.00 0.25 0.30 0.57 0.46 0.31
O4' 0.01 0.33 0.02 0.02 0.17 0.00 0.08 0.01 0.15 0.19 0.26 0.33 0.11 0.10 0.02 0.22 0.25 0.00 0.28 0.54 0.42 0.31
O5' 0.33 0.59 0.49 0.29 0.51 0.02 0.64 0.01 0.65 0.80 0.62 0.52 0.72 0.81 0.52 0.44 0.30 0.28 0.00 0.02 0.02 0.01
OP1 0.66 0.99 0.72 0.48 0.91 0.24 1.09 0.29 1.09 1.28 1.04 0.88 1.18 1.32 0.91 0.67 0.57 0.54 0.02 0.00 0.01 0.01
OP2 0.44 0.95 0.52 0.21 0.88 0.35 1.19 0.41 1.24 1.23 1.10 0.82 1.44 1.44 0.80 0.53 0.46 0.42 0.02 0.01 0.00 0.01
P 0.35 0.57 0.53 0.23 0.52 0.11 0.73 0.02 0.71 0.96 0.62 0.49 0.83 1.00 0.56 0.49 0.31 0.31 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 1.98 2.44 2.33 2.21 3.23 2.07 2.77 1.71 2.04 2.03 2.96 3.99 2.46 2.96 2.97 1.71 1.01 1.12 1.14 0.46
C2 1.58 1.66 1.96 2.06 2.10 1.98 1.88 1.73 1.39 1.43 1.91 2.54 1.75 2.40 2.77 1.53 0.96 0.89 1.16 0.44
C2' 1.93 2.30 2.32 2.19 3.08 2.08 2.63 1.70 1.88 1.89 2.80 3.88 2.38 3.01 2.96 1.69 0.95 1.10 1.09 0.40
C3' 2.20 2.65 2.60 2.38 3.38 2.22 2.86 1.81 2.14 2.20 3.15 4.19 2.77 3.28 3.12 1.87 1.10 1.33 0.97 0.60
C4 1.59 1.99 1.92 1.94 2.81 1.88 2.49 1.62 1.78 1.66 2.48 3.45 1.94 2.43 2.67 1.46 0.92 1.08 1.14 0.40
C4' 2.52 3.09 2.87 2.59 3.76 2.36 3.18 1.91 2.49 2.60 3.59 4.55 3.20 3.52 3.26 2.11 1.28 1.33 1.13 0.70
C5 1.32 1.91 1.50 1.55 2.88 1.58 2.61 1.44 1.83 1.58 2.48 3.51 1.76 1.93 2.22 1.21 0.81 1.16 1.10 0.39
C5' 2.81 3.47 3.07 2.69 4.10 2.48 3.45 2.01 2.78 2.93 3.98 4.90 3.60 3.69 3.24 2.34 1.46 1.50 1.16 0.90
C6 1.03 1.54 1.23 1.36 2.41 1.40 2.25 1.36 1.56 1.27 2.03 2.91 1.39 1.58 2.00 0.99 0.72 1.10 1.12 0.33
C8 1.66 2.43 1.77 1.67 3.49 1.67 3.03 1.46 2.17 1.99 3.11 4.28 2.30 2.25 2.32 1.44 0.88 1.26 1.08 0.47
N1 1.21 1.39 1.52 1.66 1.96 1.66 1.82 1.55 1.27 1.17 1.70 2.38 1.40 1.88 2.30 1.22 0.83 0.94 1.15 0.38
N3 1.73 1.91 2.15 2.19 2.48 2.07 2.19 1.76 1.61 1.63 2.26 3.02 1.97 2.67 2.96 1.61 0.99 0.95 1.16 0.43
N6 0.79 1.53 0.82 0.94 2.44 1.00 2.35 1.09 1.66 1.28 2.04 2.87 1.29 1.05 1.48 0.73 0.55 1.20 1.05 0.33
N7 1.46 2.30 1.48 1.42 3.40 1.47 3.02 1.34 2.15 1.89 2.98 4.14 2.10 1.87 2.02 1.27 0.81 1.28 1.05 0.47
N9 1.75 2.28 2.03 1.96 3.18 1.90 2.77 1.61 2.00 1.88 2.84 3.92 2.22 2.59 2.68 1.54 0.94 1.15 1.12 0.44
O2' 1.92 2.16 2.32 2.23 2.90 2.13 2.49 1.74 1.78 1.80 2.62 3.66 2.28 3.03 3.02 1.73 0.99 0.81 1.44 0.58
O3' 2.18 2.59 2.64 2.44 3.27 2.24 2.74 1.81 2.04 2.14 3.07 4.07 2.74 3.34 3.21 1.84 1.03 1.12 1.07 0.44
O4' 2.41 2.96 2.74 2.51 3.68 2.30 3.14 1.88 2.45 2.51 3.48 4.44 3.02 3.34 3.19 2.04 1.26 1.27 1.23 0.71
O5' 3.04 3.76 3.24 2.75 4.41 2.55 3.77 2.05 3.09 3.22 4.28 5.21 3.87 3.82 3.17 2.56 1.59 1.52 1.47 1.17
OP1 3.76 4.94 3.82 3.10 5.58 2.64 4.82 1.99 4.10 4.24 5.54 6.36 5.06 4.07 3.18 3.01 1.98 1.59 1.89 1.53
OP2 3.00 3.82 3.17 2.71 4.44 2.62 3.75 2.32 3.10 3.22 4.38 5.26 3.96 3.67 3.10 2.63 1.80 1.87 1.92 1.65
P 3.15 4.14 3.27 2.67 4.82 2.41 4.09 1.88 3.36 3.49 4.73 5.65 4.27 3.73 2.96 2.57 1.54 1.44 1.51 1.17

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.01 0.02 0.01 0.01 0.04 0.02 0.01 0.02 0.02 0.05 0.02 0.15 0.01 0.14 0.40 0.35 0.17
C2 0.02 0.00 0.14 0.17 0.01 0.10 0.01 0.19 0.01 0.01 0.01 0.01 0.01 0.12 0.16 0.12 0.34 0.68 0.73 0.40
C2' 0.00 0.14 0.00 0.01 0.05 0.02 0.11 0.09 0.14 0.03 0.11 0.06 0.25 0.00 0.03 0.02 0.26 0.41 0.40 0.30
C3' 0.01 0.17 0.01 0.00 0.21 0.00 0.24 0.02 0.23 0.13 0.19 0.23 0.23 0.02 0.01 0.02 0.25 0.44 0.32 0.27
C4 0.02 0.01 0.05 0.21 0.00 0.11 0.00 0.21 0.01 0.01 0.00 0.01 0.01 0.18 0.16 0.03 0.48 0.99 1.06 0.58
C4' 0.01 0.10 0.02 0.00 0.11 0.00 0.18 0.01 0.19 0.07 0.09 0.12 0.20 0.16 0.03 0.00 0.02 0.24 0.28 0.07
C5 0.01 0.01 0.11 0.24 0.00 0.18 0.00 0.29 0.00 0.01 0.01 0.01 0.02 0.26 0.21 0.10 0.55 1.04 1.10 0.65
C5' 0.04 0.19 0.09 0.02 0.21 0.01 0.29 0.00 0.28 0.12 0.20 0.23 0.30 0.09 0.11 0.02 0.01 0.31 0.40 0.02
C6 0.02 0.01 0.14 0.23 0.01 0.19 0.00 0.28 0.00 0.00 0.01 0.01 0.02 0.25 0.19 0.13 0.49 0.81 0.85 0.52
N1 0.01 0.01 0.03 0.13 0.01 0.07 0.01 0.12 0.00 0.00 0.01 0.01 0.02 0.11 0.09 0.02 0.30 0.59 0.61 0.32
N3 0.02 0.01 0.11 0.19 0.00 0.09 0.01 0.20 0.01 0.01 0.00 0.01 0.01 0.13 0.16 0.09 0.41 0.84 0.91 0.49
N4 0.02 0.01 0.06 0.23 0.01 0.12 0.01 0.23 0.01 0.01 0.01 0.00 0.02 0.20 0.18 0.04 0.52 1.12 1.20 0.65
O2 0.05 0.01 0.25 0.23 0.01 0.20 0.02 0.30 0.02 0.02 0.01 0.02 0.00 0.24 0.28 0.21 0.39 0.66 0.72 0.46
O2' 0.02 0.12 0.00 0.02 0.18 0.16 0.26 0.09 0.25 0.11 0.13 0.20 0.24 0.00 0.06 0.12 0.15 0.36 0.39 0.23
O3' 0.15 0.16 0.03 0.01 0.16 0.03 0.21 0.11 0.19 0.09 0.16 0.18 0.28 0.06 0.00 0.10 0.25 0.59 0.44 0.29
O4' 0.01 0.12 0.02 0.02 0.03 0.00 0.10 0.02 0.13 0.02 0.09 0.04 0.21 0.12 0.10 0.00 0.13 0.41 0.36 0.21
O5' 0.14 0.34 0.26 0.25 0.48 0.02 0.55 0.01 0.49 0.30 0.41 0.52 0.39 0.15 0.25 0.13 0.00 0.02 0.02 0.01
OP1 0.40 0.68 0.41 0.44 0.99 0.24 1.04 0.31 0.81 0.59 0.84 1.12 0.66 0.36 0.59 0.41 0.02 0.00 0.01 0.01
OP2 0.35 0.73 0.40 0.32 1.06 0.28 1.10 0.40 0.85 0.61 0.91 1.20 0.72 0.39 0.44 0.36 0.02 0.01 0.00 0.01
P 0.17 0.40 0.30 0.27 0.58 0.07 0.65 0.02 0.52 0.32 0.49 0.65 0.46 0.23 0.29 0.21 0.01 0.01 0.01 0.00