sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A1169-A1166
X
>3U5D-12310-11593
X
>3CMA-0442-01321
X
>1VQP-0442-01321
X
>1VQ4-0442-01321
X
>3U5H-5340-51389
X
>1VQN-0442-01321
X
>3CCM-0442-01321
X
>2QEX-0442-01321
X
>3CC7-0442-01321
X
</seq>
<hsp>
0 1:0.615797503757
0 2:0.970668232663
0 3:0.955432291724
0 4:0.990864685155
0 5:0.973113921282
0 6:0.987247383641
0 7:0.985205604144
0 8:1.0
0 9:0.987497622794
1 2:0.404031746936
1 3:0.388036032054
1 4:0.427912837977
1 5:0.403859773643
1 6:0.418538819117
1 7:0.411547710086
1 8:0.431215945567
1 9:0.419609652487
2 3:0.0993577948545
2 4:0.16596763868
2 5:0.0901364732763
2 6:0.123599072534
2 7:0.0810756450481
2 8:0.127549821381
2 9:0.111200150358
3 4:0.109397946644
3 5:0.0849930679568
3 6:0.0579222061596
3 7:0.0725847229367
3 8:0.0842481769848
3 9:0.0757258839372
4 5:0.0952986884075
4 6:0.0578574798387
4 7:0.0900693451407
4 8:0.0548247739583
4 9:0.0588699462342
5 6:0.0706301286969
5 7:0.0346956697105
5 8:0.0675859116951
5 9:0.0496025357085
6 7:0.0573415762941
6 8:0.041580553906
6 9:0.039429272293
7 8:0.0545625371496
7 9:0.0378359385265
8 9:0.0271178262985
</hsp>